Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006577.1

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Reverse (-)

44748 .. 46646

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006577.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgttccggcaagcctcacgtctcttgggtcgagcctcttggctgcggccacgacccttctgcacagaggtcccagcagccactccatcagcggacccagcctttgtagaggcatggaagaaagtggcgcccaacatcgacccacccaggactccatcaacctacatggaccctcggcctcccatcccttcttccctcccttccaaaatgacagtcaatttcgtcctcccttattcttctgagctctctggcaaagaggtctctgccctaaatttgatatcttttcggttattgatccgcgtcgacatggtcatgataccagcaacaaccggacagatgggtgttttgcctggccatgtcgcaaccattgcggagctaaagcctggagtcttatcagtgcacgatgggactgatgtgaaaaagtattttatcagcagtggatttgcttttattcatgcaaattctgttgctgatataattgccgtggaagctgtgccaattgaccaaattgacgcaagcttggtacagaaggggcttgcagagttcactcagaagctcagttcagctacaaccgatttggagaaagctgaagcacaaataggcatcgatgttcatagtgctcttaactctgctgtcactggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000275 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

214

Amino Acids

22.92

Weight (kDa)

6.42

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	300
AciI	CCGC	4 cut(s)	46, 92, 298, 371
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	2 cut(s)	47, 352
AcsI	RAATTY	2 cut(s)	271, 460
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	525
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	3 cut(s)	146, 349, 382
AluBI	AGCT	7 cut(s)	244, 376, 491, 519, 556, 566, 587
AluI	AGCT	7 cut(s)	244, 376, 491, 519, 556, 566, 587
Alw21I	GWGCWC	3 cut(s)	246, 402, 622
Alw26I	GTCTC	2 cut(s)	26, 265
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	3 cut(s)	47, 176, 352
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	2 cut(s)	43, 77
ApoI	RAATTY	2 cut(s)	271, 460
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 198, 230
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	70, 94, 169
AvaII	GGWCC	3 cut(s)	70, 94, 169
BaeGI	GKGCMC	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	246, 402, 622
BbvI	GCAGC	2 cut(s)	30, 89
BccI	CCATC	5 cut(s)	94, 163, 191, 331, 398
BceAI	ACGGC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	3 cut(s)	148, 351, 384
BcoDI	GTCTC	2 cut(s)	26, 265
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	3 cut(s)	44, 47, 78
BlsI	GCNGC	3 cut(s)	45, 48, 79
Bme1390I	CCNGG	3 cut(s)	148, 351, 384
Bme18I	GGWCC	3 cut(s)	70, 94, 169
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	3 cut(s)	70, 94, 169
BmiI	GGNNCC	4 cut(s)	72, 96, 129, 171
BmrFI	CCNGG	3 cut(s)	148, 351, 384
BmsI	GCATC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	146, 173, 483
BsaWI	WCCGGW	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	3 cut(s)	148, 351, 384
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	146, 173, 483
BseGI	GGATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	231, 563, 571
BseNI	ACTGG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	30, 89
BseYI	CCCAGC	2 cut(s)	73, 97
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	49, 178, 354
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	3 cut(s)	246, 402, 622
BsiSI	CCGG	2 cut(s)	7, 330
BslFI	GGGAC	2 cut(s)	56, 421
BsmAI	GTCTC	2 cut(s)	26, 265
BsmBI	CGTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	56, 421
BsnI	GGCC	3 cut(s)	49, 178, 354
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	246, 402, 622
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	4 cut(s)	46, 92, 298, 371
BspANI	GGCC	3 cut(s)	49, 178, 354
BspCNI	CTCAG	3 cut(s)	232, 562, 570
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	72, 96, 129, 171
BspPI	GGATC	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	3 cut(s)	146, 173, 483
BssMI	GATC	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	3 cut(s)	148, 351, 384
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	12, 517, 537
BstDEI	CTNAG	3 cut(s)	240, 549, 557
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	26, 265
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 368, 488
BstNI	CCWGG	3 cut(s)	148, 351, 384
BstSCI	CCNGG	3 cut(s)	146, 349, 382
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	30, 89
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	49, 178, 354
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	402, 442, 636
Cac8I	GCNNGC	3 cut(s)	12, 517, 537
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	70, 94, 169
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	2 cut(s)	289, 521
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	6 cut(s)	114, 166, 307, 313, 356, 455
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	3 cut(s)	240, 549, 557
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	2 cut(s)	47, 352
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	3 cut(s)	70, 94, 169
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	146, 349, 382
EcoRV	GATATC	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	6 cut(s)	117, 169, 310, 316, 359, 458
FaiI	YATR	8 cut(s)	115, 167, 308, 314, 357, 456, 476, 615
FaqI	GGGAC	2 cut(s)	56, 421
FatI	CATG	6 cut(s)	113, 165, 306, 312, 355, 454
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	44, 47, 78
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	44, 47, 78
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	44, 47, 78
GsaI	CCCAGC	2 cut(s)	77, 101
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	49, 178, 354
HapII	CCGG	2 cut(s)	7, 330
HgaI	GACGC	2 cut(s)	289, 521
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	117, 169, 310, 316, 359, 458
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	2 cut(s)	151, 387
HpaII	CCGG	2 cut(s)	7, 330
Hpy166II	GTNNAC	3 cut(s)	304, 400, 546
Hpy188I	TCNGA	2 cut(s)	241, 552
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	3 cut(s)	304, 400, 546
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	4 cut(s)	67, 198, 210, 523
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	63, 400, 458, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 368, 488
HpyF3I	CTNAG	3 cut(s)	240, 549, 557
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	117, 169, 310, 316, 359, 458
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	30, 89
LweI	GCATC	1 cut(s)	612
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	3 cut(s)	130, 183, 228
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	3 cut(s)	246, 402, 622
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	6 cut(s)	217, 271, 460, 477, 498, 507
MluNI	TGGCCA	1 cut(s)	354
Mly113I	GGCGCC	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	145, 396
MnlI	CCTC	9 cut(s)	25, 46, 61, 103, 183, 189, 206, 236, 250
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	2 cut(s)	7, 330
MspR9I	CCNGG	3 cut(s)	148, 351, 384
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	3 cut(s)	148, 351, 384
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	98, 368, 488
NarI	GGCGCC	1 cut(s)	128
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	6 cut(s)	117, 169, 310, 316, 359, 458
NlaIV	GGNNCC	4 cut(s)	72, 96, 129, 171
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	634
PagI	TCATGA	1 cut(s)	312
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	45, 48, 79
PleI	GAGTC	2 cut(s)	145, 395
PluTI	GGCGCC	1 cut(s)	131
PpsI	GAGTC	2 cut(s)	145, 395
PpuMI	RGGWCCY	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	3 cut(s)	146, 349, 382
PspFI	CCCAGC	2 cut(s)	73, 97
PspGI	CCWGG	3 cut(s)	146, 349, 382
PspN4I	GGNNCC	4 cut(s)	72, 96, 129, 171
PspPI	GGNCC	3 cut(s)	70, 94, 169
PspPPI	RGGWCCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	3 cut(s)	44, 47, 78
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	3 cut(s)	70, 94, 169
SchI	GAGTC	2 cut(s)	145, 396
ScrFI	CCNGG	3 cut(s)	148, 351, 384
SduI	GDGCHC	3 cut(s)	246, 402, 622
SfaNI	GCATC	1 cut(s)	612
SfoI	GGCGCC	1 cut(s)	129
SinI	GGWCC	3 cut(s)	70, 94, 169
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	6 cut(s)	217, 271, 460, 477, 498, 507
SsiI	CCGC	4 cut(s)	46, 92, 298, 371
SspDI	GGCGCC	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	146, 349, 382
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	31, 138, 303, 606
TasI	AATT	6 cut(s)	217, 271, 460, 477, 498, 507
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	3 cut(s)	402, 442, 643
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	2 cut(s)	43, 77
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	443, 602
TspRI	CASTG	3 cut(s)	402, 442, 643
Tth111I	GACNNNGTC	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	70, 94, 169
XapI	RAATTY	2 cut(s)	271, 460
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.