Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Forward (+)

17642037 .. 17645617

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G118300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTGCGCCGCGCCACAGCCCTCTTGACCCGACCTGTGATCTCCCTCCGGGCCCGACCCTTCTCCACGGATGTCTCAGAAATTCCAGTAGCCGACACGTCGTTTTATGATGCTTGGAAGAAAGTGATCCCAACCTTAGAGCCACCCCACACCCCATTGACCTTCATGAAGCCTCGGCCTCCAACTCCATCTTCGATCCCTACTAAGCTCACTGTCAACTTTGTGCTGCCTTATAACTCGGAGCTTGCAGCCAAAGAGGTTGACATGGTAATCATACCAGCAAGCACTGGGCACATGGGTGTTCTTCCTGGACATGTAGCAACAATTGCAGAGTTGAAACCTGGGGTCCTATCAGTACACGAAGGAACTGATGTGACAAAGTATTTCGTCAGCAGTGGTTTTGCATTCATCCATGCGAACTCTTATGCAGATATAATTGCTGTAGAGGCTGTCCCTCTTGATCGTGTCGATGCAAGTCTTGTCCAGAAGGGGCTTGCAGAGTTCACCCAGAAGCTCAGCTCAGCTTCAACTGACTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTGCATAGTGCCCTCAATGCCGCCCTCACAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

201

Amino Acids

21.42

Weight (kDa)

6.05

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccII	CGCG	1 cut(s)	12
AciI	CCGC	2 cut(s)	10, 588
AclWI	GGATC	2 cut(s)	121, 190
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	357
AflIII	ACRYGT	2 cut(s)	96, 313
AgsI	TTSAA	2 cut(s)	337, 528
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	307, 340
AjuI	GAANNNNNNNTTGG	4 cut(s)	175, 207, 540, 572
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	7 cut(s)	208, 244, 514, 519, 524, 545, 551
AluI	AGCT	7 cut(s)	208, 244, 514, 519, 524, 545, 551
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	121, 190
AoxI	GGCC	2 cut(s)	51, 176
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	226, 248
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	9, 14
AspS9I	GGNCC	3 cut(s)	51, 52, 346
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	3 cut(s)	55, 294, 580
BanII	GRGCYC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	213, 260
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	309, 342
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	4 cut(s)	10, 227, 249, 588
BlpI	GCTNAGC	2 cut(s)	515, 520
BlsI	GCNGC	4 cut(s)	11, 228, 250, 589
Bme1390I	CCNGG	3 cut(s)	50, 309, 342
Bme18I	GGWCC	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	3 cut(s)	51, 52, 346
BmiI	GGNNCC	2 cut(s)	53, 347
BmrFI	CCNGG	3 cut(s)	50, 309, 342
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	100, 460
BmuI	ACTGGG	1 cut(s)	297
Bpu1102I	GCTNAGC	2 cut(s)	515, 520
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	66, 173, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bse1I	ACTGG	2 cut(s)	86, 292
BseBI	CCWGG	2 cut(s)	309, 342
BseDI	CCNNGG	3 cut(s)	66, 173, 341
BseGI	GGATG	2 cut(s)	76, 408
BseMII	CTCAG	4 cut(s)	90, 529, 534, 566
BseNI	ACTGG	2 cut(s)	86, 292
BseSI	GKGCMC	3 cut(s)	55, 294, 580
BseXI	GCAGC	2 cut(s)	213, 260
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	53, 178
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	53, 178
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	55, 294, 580
Bsp143I	GATC	4 cut(s)	39, 126, 195, 460
Bsp1720I	GCTNAGC	2 cut(s)	515, 520
BspACI	CCGC	2 cut(s)	10, 588
BspANI	GGCC	2 cut(s)	53, 178
BspCNI	CTCAG	4 cut(s)	89, 528, 533, 565
BspFNI	CGCG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	53, 347
BspPI	GGATC	2 cut(s)	121, 190
BsrI	ACTGG	2 cut(s)	86, 292
BssECI	CCNNGG	3 cut(s)	66, 173, 341
BssMI	GATC	4 cut(s)	39, 126, 195, 460
Bst2UI	CCWGG	2 cut(s)	309, 342
Bst4CI	ACNGT	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	246, 283, 495
BstDEI	CTNAG	6 cut(s)	76, 136, 204, 515, 520, 552
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	76, 408
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	9, 14
BstKTI	GATC	4 cut(s)	42, 129, 198, 463
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	39, 126, 195, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 446, 584
BstNI	CCWGG	2 cut(s)	309, 342
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	48, 307, 340
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	3 cut(s)	55, 294, 580
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	213, 260
BsuRI	GGCC	2 cut(s)	53, 178
BtgI	CCRYGG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	76, 408
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	3 cut(s)	210, 285, 400
Cac8I	GCNNGC	3 cut(s)	246, 283, 495
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	2 cut(s)	9, 14
Cfr13I	GGNCC	3 cut(s)	51, 52, 346
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	5 cut(s)	166, 265, 295, 314, 413
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	6 cut(s)	76, 136, 204, 515, 520, 552
DpnI	GATC	4 cut(s)	41, 128, 197, 462
DpnII	GATC	4 cut(s)	39, 126, 195, 460
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	307, 340
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	5 cut(s)	169, 268, 298, 317, 416
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	5 cut(s)	165, 264, 294, 313, 412
Fnu4HI	GCNGC	4 cut(s)	10, 227, 249, 588
FokI	GGATG	2 cut(s)	83, 395
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	10, 227, 249, 588
FspBI	CTAG	1 cut(s)	601
GlaI	GCGC	2 cut(s)	8, 13
GluI	GCNGC	4 cut(s)	10, 227, 249, 588
HaeIII	GGCC	2 cut(s)	53, 178
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	2 cut(s)	9, 14
Hin1II	CATG	5 cut(s)	169, 268, 298, 317, 416
Hin6I	GCGC	2 cut(s)	7, 12
HinP1I	GCGC	2 cut(s)	7, 12
HincII	GTYRAC	2 cut(s)	217, 262
HindII	GTYRAC	2 cut(s)	217, 262
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	4 cut(s)	217, 262, 358, 504
Hpy188I	TCNGA	3 cut(s)	79, 241, 555
Hpy188III	TCNNGA	4 cut(s)	25, 166, 458, 484
Hpy8I	GTNNAC	4 cut(s)	217, 262, 358, 504
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	70, 172, 356, 481
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	7 cut(s)	248, 329, 404, 428, 473, 497, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 446, 584
HpyF3I	CTNAG	6 cut(s)	76, 136, 204, 515, 520, 552
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	5 cut(s)	169, 268, 298, 317, 416
HspAI	GCGC	2 cut(s)	7, 12
Kzo9I	GATC	4 cut(s)	39, 126, 195, 460
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	213, 260
LweI	GCATC	2 cut(s)	100, 460
MaeI	CTAG	1 cut(s)	601
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	4 cut(s)	41, 128, 197, 462
MboI	GATC	4 cut(s)	39, 126, 195, 460
MboII	GAAGA	3 cut(s)	130, 183, 296
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	3 cut(s)	55, 294, 580
MluCI	AATT	3 cut(s)	81, 324, 435
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	9 cut(s)	32, 56, 183, 189, 250, 439, 465, 590, 602
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	3 cut(s)	50, 309, 342
MteI	GCGCNGCGC	1 cut(s)	10
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	309, 342
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	326, 446, 584
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	4 cut(s)	39, 126, 195, 460
NlaIII	CATG	5 cut(s)	169, 268, 298, 317, 416
NlaIV	GGNNCC	2 cut(s)	53, 347
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	317
OliI	CACNNNNGTG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	11, 228, 250, 589
PpuMI	RGGWCCY	1 cut(s)	346
PscI	ACATGT	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	307, 340
PspGI	CCWGG	2 cut(s)	307, 340
PspN4I	GGNNCC	2 cut(s)	53, 347
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	51, 52, 346
PspPPI	RGGWCCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	4 cut(s)	10, 227, 249, 588
Sau3AI	GATC	4 cut(s)	39, 126, 195, 460
Sau96I	GGNCC	3 cut(s)	51, 52, 346
ScrFI	CCNGG	3 cut(s)	50, 309, 342
SduI	GDGCHC	3 cut(s)	55, 294, 580
SfaNI	GCATC	2 cut(s)	100, 460
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	81, 324, 435
SsiI	CCGC	2 cut(s)	10, 588
SspMI	CTAG	1 cut(s)	601
StyD4I	CCNGG	3 cut(s)	48, 307, 340
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	194, 468
TasI	AATT	3 cut(s)	81, 324, 435
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	2 cut(s)	12, 590
TscAI	CASTG	3 cut(s)	217, 292, 400
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	226, 248
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	154, 182, 397
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	3 cut(s)	217, 292, 400
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.