FvH4_5g20890

ATP synthase subunit delta'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003919
Physical Location & Seq
Forward (+)
12495977 .. 12498268
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20890.t1

Sequence Viewer

Length: 603 bp
ATGTTGCGGCAAGTCTCACGTCTCTTACGTCGAGCCTTTTTGCTGCGGCCACGACCCTTCTGCACAGAGGTCCCAGCCCCCATTGCACCAACAAACCCAGCCTTGGCAGAGGCATGGAAGAAAGTGATGCCCAACATGGATCCACCCAGGACTCCATCAACCTACATGGAGCCTCGGCCTCCTGTCCCTTCTTCCCTCCCTTCCAAAATGACAGTCAACTTCGTCCTCCCTTATTCGTCTGAGCTCTCTGGCAAAGAGGTCGACATGGTCATGATACCAACAACAACAGGACAGATGGGTGTTTTGCCTGGCCATGTTGCAACCATTGCGGAGCTAAAGCCTGGAGTTCTATCAGTGTACGATGGGAGTGATGTGAAAAAGTATTTTATCAGCAGTGGCTTTGCTTTTATTCATGCAAATTCTGTTGCCGATATAATCGCCGTGGAAGCTGTGCCAATTGAGCAAATTGACGCGAGCTTGGTACAGAAGGGGCTTGCAGATTTCACTCAGAAACTCAGTTCAGCTACAACCGAGTTGGAGAAAGCCGAAGTGCAAATAGGCATCGATGTTCATAGTGCTCTTTACTCTGCTATCACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_DE_N

Protein Analysis

201

Amino Acids

21.62

Weight (kDa)

6.3

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_DE_N PF02823 70 - 142 2.5e-17 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 473
AciI CCGC 3 cut(s) 7, 46, 329
AclWI GGATC 2 cut(s) 134, 147
AcoI YGGCCR 2 cut(s) 47, 310
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 2 cut(s) 359, 483
AfiI CCNNNNNNNGG 1 cut(s) 103
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 3 cut(s) 146, 307, 340
AluBI AGCT 5 cut(s) 244, 334, 449, 477, 524
AluI AGCT 5 cut(s) 244, 334, 449, 477, 524
Alw21I GWGCWC 2 cut(s) 246, 580
Alw26I GTCTC 2 cut(s) 19, 26
AlwI GGATC 2 cut(s) 134, 147
AoxI GGCC 3 cut(s) 47, 176, 310
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 312
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 246, 580
BbvI GCAGC 1 cut(s) 30
BccI CCATC 3 cut(s) 163, 289, 356
BceAI ACGGC 1 cut(s) 425
BcgI CGANNNNNNTGC 4 cut(s) 42, 76, 241, 275
BciT130I CCWGG 3 cut(s) 148, 309, 342
BcoDI GTCTC 2 cut(s) 19, 26
BisI GCNGC 3 cut(s) 8, 44, 47
BlsI GCNGC 3 cut(s) 9, 45, 48
Bme1390I CCNGG 3 cut(s) 148, 309, 342
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 72, 141, 171
BmrFI CCNGG 3 cut(s) 148, 309, 342
BmsI GCATC 2 cut(s) 117, 570
BpmI CTGGAG 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 102, 146, 173, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 2 cut(s) 81, 324
BseBI CCWGG 3 cut(s) 148, 309, 342
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 102, 146, 173, 441
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 2 cut(s) 81, 324
BseMII CTCAG 3 cut(s) 231, 521, 529
BseNI ACTGG 1 cut(s) 601
BseXI GCAGC 1 cut(s) 30
BseYI CCCAGC 2 cut(s) 73, 97
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 473
BshFI GGCC 3 cut(s) 49, 178, 312
BshVI ATCGAT 1 cut(s) 564
BsiHKAI GWGCWC 2 cut(s) 246, 580
BslFI GGGAC 2 cut(s) 56, 170
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 19, 26
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 56, 170
BsnI GGCC 3 cut(s) 49, 178, 312
Bsp1286I GDGCHC 2 cut(s) 246, 580
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 3 cut(s) 7, 46, 329
BspANI GGCC 3 cut(s) 49, 178, 312
BspCNI CTCAG 3 cut(s) 232, 520, 528
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 1 cut(s) 473
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 72, 141, 171
BspPI GGATC 2 cut(s) 134, 147
BsrDI GCAATG 2 cut(s) 81, 324
BsrI ACTGG 1 cut(s) 601
BssECI CCNNGG 4 cut(s) 102, 146, 173, 441
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 3 cut(s) 148, 309, 342
Bst4CI ACNGT 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 475, 495
BstDEI CTNAG 3 cut(s) 240, 507, 515
BstDSI CCRYGG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 473
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 19, 26
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 83, 326, 446, 460
BstNI CCWGG 3 cut(s) 148, 309, 342
BstSCI CCNGG 3 cut(s) 146, 307, 340
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 564
BsuRI GGCC 3 cut(s) 49, 178, 312
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 360, 400, 594
Cac8I GCNNGC 2 cut(s) 475, 495
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 564
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 358, 482
CviAII CATG 7 cut(s) 114, 136, 166, 265, 271, 314, 413
CviQI GTAC 2 cut(s) 358, 482
DdeI CTNAG 3 cut(s) 240, 507, 515
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 47, 310
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 146, 307, 340
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 7 cut(s) 117, 139, 169, 268, 274, 317, 416
FaiI YATR 9 cut(s) 115, 137, 167, 266, 272, 315, 414, 434, 573
FaqI GGGAC 2 cut(s) 56, 170
FatI CATG 7 cut(s) 113, 135, 165, 264, 270, 313, 412
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 8, 44, 47
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 8, 44, 47
GluI GCNGC 3 cut(s) 8, 44, 47
GsaI CCCAGC 2 cut(s) 77, 101
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 3 cut(s) 49, 178, 312
HgaI GACGC 1 cut(s) 479
Hin1II CATG 7 cut(s) 117, 139, 169, 268, 274, 317, 416
HincII GTYRAC 2 cut(s) 217, 262
HindII GTYRAC 2 cut(s) 217, 262
HinfI GANTC 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 217, 262, 358
Hpy188I TCNGA 2 cut(s) 241, 510
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 3 cut(s) 217, 262, 358
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 4 cut(s) 67, 198, 210, 481
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 19, 28
HpyCH4V TGCA 6 cut(s) 63, 86, 320, 416, 497, 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 326, 446, 460
HpyF3I CTNAG 3 cut(s) 240, 507, 515
HpySE526I ACGT 2 cut(s) 19, 28
Hsp92II CATG 7 cut(s) 117, 139, 169, 268, 274, 317, 416
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 169, 331
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 2 cut(s) 117, 570
MaeII ACGT 2 cut(s) 19, 28
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 130, 183
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 246, 580
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 418, 456, 465
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 7 cut(s) 61, 103, 183, 189, 206, 236, 250
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 312
MspR9I CCNGG 3 cut(s) 148, 309, 342
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 3 cut(s) 148, 309, 342
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 83, 326, 446, 460
NdeII GATC 1 cut(s) 139
NlaIII CATG 7 cut(s) 117, 139, 169, 268, 274, 317, 416
NlaIV GGNNCC 3 cut(s) 72, 141, 171
NmeAIII GCCGAG 1 cut(s) 154
PagI TCATGA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 9, 45, 48
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 3 cut(s) 146, 307, 340
PspFI CCCAGC 2 cut(s) 73, 97
PspGI CCWGG 3 cut(s) 146, 307, 340
PspN4I GGNNCC 3 cut(s) 72, 141, 171
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 2 cut(s) 359, 483
RsaNI GTAC 2 cut(s) 358, 482
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 260
SatI GCNGC 3 cut(s) 8, 44, 47
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 3 cut(s) 148, 309, 342
SduI GDGCHC 2 cut(s) 246, 580
SfaNI GCATC 2 cut(s) 117, 570
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 3 cut(s) 418, 456, 465
SsiI CCGC 3 cut(s) 7, 46, 329
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 146, 307, 340
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 22, 31
TaqI TCGA 3 cut(s) 31, 261, 564
TasI AATT 3 cut(s) 418, 456, 465
TauI GCSGC 2 cut(s) 10, 49
TscAI CASTG 3 cut(s) 360, 400, 601
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 401, 560
TspRI CASTG 3 cut(s) 360, 400, 601
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.