Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

19183523 .. 19185644

Gene Structure 2122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATTCTGTTTCTCTTTCTGAGGTTACTGTCATTAAAGGAACAACACATTTGGGTTTTATGCACAGTTTCAGACAGCCATTTTGTGGTGTCAAAATATCTCCAAAGTTCTATTTATCCAAAGTTGATGGACCAAAGGCAATATCTTCGAGCAGCAACACAAAGAGTCAATTTGTTTATGGAGGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTATAAGATGAATGGAGTAAACCTAAAAAGCAGAACATTGATGAGTTCTGCAGTTAAAGAAAGATCATTACTTGATGCTTATGATGATGAGTATGGTGGAGTAATAGTAGATCATGGAAAATTACCATCAAACCCTTATGCTTTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTTTGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTTGAGTATCATCATGCAGAGAAAGGATATGTAATGTTAACATATTGGATACCAGAGGAGGAACCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTATTAAATCAACATAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCTTCGATTACTGGTCTATGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGAGAAGTCAAGGAAGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACATGCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTCTCTGATAAGATAATCATCGATGCTCTTGAGATCAAAGCCGCAAAGTGGATGCCATTGGCTGAATTTGTGGAGCAACCGATGATAAGAGGAGACAAAATGTTTAAAAGAGTGATTGAAATATGCGAGGCGAGATTAAGCCATCGGTACTGCGGTCTTTCTCCTCATCGACTTGTCTCTACTTTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCCCACTCCAATTGTAGCACTGAGTTTTATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

369

Amino Acids

41.31

Weight (kDa)

6.37

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	97 - 175	4e-32	Nudix hydrolase domain
NUDIX	PF00293	189 - 306	9.4e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	86
AciI	CCGC	2 cut(s)	876, 987
AclI	AACGTT	2 cut(s)	786, 1050
AclWI	GGATC	1 cut(s)	1064
AcsI	RAATTY	1 cut(s)	899
AcuI	CTGAAG	2 cut(s)	189, 711
AfaI	GTAC	2 cut(s)	621, 983
AfiI	CCNNNNNNNGG	2 cut(s)	86, 882
AgsI	TTSAA	1 cut(s)	953
AluBI	AGCT	4 cut(s)	197, 377, 461, 767
AluI	AGCT	4 cut(s)	197, 377, 461, 767
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	3 cut(s)	823, 921, 1015
AlwI	GGATC	1 cut(s)	1064
ApeKI	GCWGC	2 cut(s)	153, 197
ApoI	RAATTY	1 cut(s)	899
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AseI	ATTAAT	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	973, 1006
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	2 cut(s)	165, 184
BccI	CCATC	4 cut(s)	122, 349, 984, 1016
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciVI	GTATCC	1 cut(s)	516
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	3 cut(s)	823, 921, 1015
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	516
BisI	GCNGC	3 cut(s)	154, 198, 876
BlsI	GCNGC	3 cut(s)	155, 199, 877
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	537
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	3 cut(s)	280, 847, 876
BmuI	ACTGGG	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
BpuEI	CTTGAG	1 cut(s)	884
Bsa29I	ATCGAT	1 cut(s)	855
BsaBI	GATNNNNATC	3 cut(s)	851, 1062, 1068
BsaI	GGTCTC	1 cut(s)	823
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 573, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 882
Bse1I	ACTGG	2 cut(s)	655, 739
Bse8I	GATNNNNATC	3 cut(s)	851, 1062, 1068
BseCI	ATCGAT	1 cut(s)	855
BseGI	GGATG	1 cut(s)	891
BseJI	GATNNNNATC	3 cut(s)	851, 1062, 1068
BseLI	CCNNNNNNNGG	2 cut(s)	86, 882
BseMII	CTCAG	3 cut(s)	12, 768, 1086
BseNI	ACTGG	2 cut(s)	655, 739
BseRI	GAGGAG	4 cut(s)	198, 545, 939, 987
BseXI	GCAGC	2 cut(s)	165, 184
BshVI	ATCGAT	1 cut(s)	855
BsiHKAI	GWGCWC	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	86, 882
BsmAI	GTCTC	3 cut(s)	823, 921, 1015
BsmFI	GGGAC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	823
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
BspACI	CCGC	2 cut(s)	876, 987
BspCNI	CTCAG	3 cut(s)	13, 767, 1087
BspDI	ATCGAT	1 cut(s)	855
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	823
BsrI	ACTGG	2 cut(s)	655, 739
BssMI	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
Bst4CI	ACNGT	2 cut(s)	31, 68
Bst6I	CTCTTC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	21, 754, 1095
BstF5I	GGATG	1 cut(s)	891
BstKTI	GATC	6 cut(s)	281, 328, 808, 870, 1066, 1072
BstMAI	GTCTC	3 cut(s)	823, 921, 1015
BstMBI	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
BstNSI	RCATGY	1 cut(s)	779
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	165, 184
Bsu15I	ATCGAT	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	516
BsuTUI	ATCGAT	1 cut(s)	855
BtsCI	GGATG	1 cut(s)	891
BtsIMutI	CAGTG	1 cut(s)	1092
CciI	TCATGA	1 cut(s)	1066
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	855
Csp6I	GTAC	2 cut(s)	620, 982
CspCI	CAANNNNNGTGG	2 cut(s)	1067, 1102
CviAII	CATG	4 cut(s)	329, 488, 776, 1067
CviJI	RGCY	8 cut(s)	79, 197, 377, 461, 767, 875, 896, 975
CviKI_1	RGCY	8 cut(s)	79, 197, 377, 461, 767, 875, 896, 975
CviQI	GTAC	2 cut(s)	620, 982
DdeI	CTNAG	3 cut(s)	21, 754, 1095
DpnI	GATC	6 cut(s)	280, 327, 807, 869, 1065, 1071
DpnII	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
DraI	TTTAAA	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	189, 711
FaeI	CATG	4 cut(s)	332, 491, 779, 1070
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	4 cut(s)	328, 487, 775, 1066
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	3 cut(s)	154, 198, 876
FokI	GGATG	1 cut(s)	898
Fsp4HI	GCNGC	3 cut(s)	154, 198, 876
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	3 cut(s)	154, 198, 876
Hin1II	CATG	4 cut(s)	332, 491, 779, 1070
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	4 cut(s)	5, 166, 209, 686
HpaI	GTTAAC	1 cut(s)	513
Hpy166II	GTNNAC	2 cut(s)	235, 513
Hpy188III	TCNNGA	2 cut(s)	863, 1067
Hpy8I	GTNNAC	2 cut(s)	235, 513
HpyAV	CCTTC	4 cut(s)	464, 651, 1041, 1083
HpyCH4III	ACNGT	2 cut(s)	31, 68
HpyCH4IV	ACGT	2 cut(s)	786, 1050
HpyCH4V	TGCA	6 cut(s)	64, 200, 266, 491, 554, 791
HpyF3I	CTNAG	3 cut(s)	21, 754, 1095
HpySE526I	ACGT	2 cut(s)	786, 1050
Hsp92II	CATG	4 cut(s)	332, 491, 779, 1070
Ksp22I	TGATCA	1 cut(s)	1063
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
LmnI	GCTCC	2 cut(s)	643, 907
LpnPI	CCDG	8 cut(s)	198, 444, 540, 564, 636, 657, 690, 720
Lsp1109I	GCAGC	2 cut(s)	165, 184
LweI	GCATC	3 cut(s)	280, 847, 876
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	786, 1050
MaeIII	GTNAC	3 cut(s)	25, 426, 663
MalI	GATC	6 cut(s)	280, 327, 807, 869, 1065, 1071
MboI	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
MboII	GAAGA	6 cut(s)	138, 408, 704, 740, 805, 1026
MfeI	CAATTG	1 cut(s)	1084
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	5 cut(s)	170, 335, 446, 899, 1084
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	559
MseI	TTAA	8 cut(s)	36, 270, 422, 512, 593, 681, 939, 971
MslI	CAYNNNNRTG	1 cut(s)	821
MunI	CAATTG	1 cut(s)	1084
NdeII	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
NlaIII	CATG	4 cut(s)	332, 491, 779, 1070
NlaIV	GGNNCC	1 cut(s)	537
NspI	RCATGY	1 cut(s)	779
PagI	TCATGA	1 cut(s)	1066
PfeI	GAWTC	3 cut(s)	5, 209, 686
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	155, 199, 877
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	219
Psp1406I	AACGTT	2 cut(s)	786, 1050
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	621, 983
RsaNI	GTAC	2 cut(s)	620, 982
RseI	CAYNNNNRTG	1 cut(s)	821
SaqAI	TTAA	8 cut(s)	36, 270, 422, 512, 593, 681, 939, 971
SatI	GCNGC	3 cut(s)	154, 198, 876
Sau3AI	GATC	6 cut(s)	278, 325, 805, 867, 1063, 1069
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	3 cut(s)	280, 847, 876
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	5 cut(s)	170, 335, 446, 899, 1084
SsiI	CCGC	2 cut(s)	876, 987
SspMI	CTAG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	31, 68
TaiI	ACGT	2 cut(s)	789, 1053
TaqI	TCGA	5 cut(s)	149, 373, 644, 855, 1003
TasI	AATT	5 cut(s)	170, 335, 446, 899, 1084
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	3 cut(s)	5, 209, 686
Tru1I	TTAA	8 cut(s)	36, 270, 422, 512, 593, 681, 939, 971
Tru9I	TTAA	8 cut(s)	36, 270, 422, 512, 593, 681, 939, 971
TscAI	CASTG	1 cut(s)	1099
TseI	GCWGC	2 cut(s)	153, 197
TspDTI	ATGAA	3 cut(s)	239, 699, 805
TspRI	CASTG	1 cut(s)	1099
Van91I	CCANNNNNTGG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	1 cut(s)	899
XceI	RCATGY	1 cut(s)	779
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.