Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

6791898 .. 6795518

Gene Structure 3621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G062300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGATGAGATTGTTTGAATCGAAAGCTATGTCTGCATCTGAGACGGTTCAGATGGGAAGGATGTATTCGAACCGGTTTTCGGGTTTCAGGCACATACCAGTTGGTGCCAAATTCTCTCCCCAGTTCTGTTCTTGCAGAGGGATTCTTCTGAAGGCTTCTTATTCTTCTCATCCTTCCAGTTCGAAAATTAACTTTCCGTCAAGTAATGCTATTGGTTCAGTTGGAGATAAACTTGCAGGGGAAACTTGCTCGTTTCAAATACTTGGAACAAATGGCACAGGGACAAGACTGAATTTGTTTCCTAGAGAGATTACAGTACTTGATGCCTTCGATGATGAGTACGGGGGAGTTATCGTTGATCCAGAACGATTACCAGCAAACCCGAATGCCTTTGGCTATATCCTGCATTCTTCTCTTTCTCATTGGAGCATGGAGGGGAAGAAGGGAATTTGGCTAAAGCTGCCAGTAGAAAGAGCTGAGCTTGTTCCAGTTGCTATTAAGGAAGGGTTCGAGTACCATCATGCGGAACGAGGGTATGTGATGTTGACATACTGGATTCCAGAAGGACCTTGCATGCTTCCTGCTAATGCTTCACATCAAGTAGGGATTGGGGGATTTGTCATCAACGAAAATAATGAGGTTCTTGTCGTACAAGAGAAACACTATGCTCCTGCGTGCGCTGGTTTTTGGAAAATACCAACCGGCTTTATCCTTGAGTCGGAAGAGATTTTCACAGGCGCTGTGAGAGAGGTTAAGGAGGAAACCGGGATCGATACAGAGTTCGTTGAGGTTATAGCATTCAGGCATGTTCACAATGTAGCTTTTGAGAAGTCAGATTTGTTCTTTATCTGCATGTTACGGCCACTATCGACTGAGATTACAGTTGATGATCTTGAAATTGAAGCAGCCAAGTGGATGCCCCTGGATGAGTTTGTGGAGCAACCACTAATACAAGAGGATTCCATGTTCAAGAAGATCATTTCGATATGTATCGCCCGGCTAGGAAAGCGTTACTGCGGTCTATCTTCTCATCAAGTGGTCTCAAAATTTGATGGCAGATTGTCTTCCTTGTACTATAATGTTGTTGATGCTCAAGATTTCAATTGTTCAAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

374

Amino Acids

41.67

Weight (kDa)

5.44

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	2 cut(s)	527, 1020
AclWI	GGATC	2 cut(s)	356, 779
AcoI	YGGCCR	1 cut(s)	863
AcsI	RAATTY	4 cut(s)	113, 295, 450, 1049
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	5 cut(s)	321, 344, 518, 654, 1076
AfiI	CCNNNNNNNGG	3 cut(s)	82, 526, 721
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	7 cut(s)	20, 260, 899, 905, 973, 1105, 1113
AjnI	CCWGG	1 cut(s)	924
AloI	GAACNNNNNNTCC	2 cut(s)	953, 985
AluBI	AGCT	5 cut(s)	29, 463, 479, 484, 824
AluI	AGCT	5 cut(s)	29, 463, 479, 484, 824
Alw26I	GTCTC	2 cut(s)	38, 1048
AlwI	GGATC	2 cut(s)	356, 779
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	1 cut(s)	863
ApeKI	GCWGC	2 cut(s)	463, 908
ApoI	RAATTY	4 cut(s)	113, 295, 450, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AsiGI	ACCGGT	1 cut(s)	75
AspLEI	GCGC	2 cut(s)	683, 743
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	2 cut(s)	769, 1000
AsuII	TTCGAA	2 cut(s)	71, 185
AvaII	GGWCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	1059
BbvI	GCAGC	2 cut(s)	450, 920
BccI	CCATC	3 cut(s)	49, 528, 1049
BceAI	ACGGC	1 cut(s)	878
BciT130I	CCWGG	1 cut(s)	926
BcnI	CCSGG	2 cut(s)	769, 1000
BcoDI	GTCTC	2 cut(s)	38, 1048
BfaI	CTAG	2 cut(s)	306, 1004
BfoI	RGCGCY	1 cut(s)	744
BisI	GCNGC	2 cut(s)	464, 909
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	2 cut(s)	465, 910
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	769, 926, 1000
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	3 cut(s)	769, 926, 1000
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	4 cut(s)	47, 316, 909, 1081
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	1059
Bpu1102I	GCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	2 cut(s)	71, 185
BpuEI	CTTGAG	2 cut(s)	737, 1080
BpuMI	CCSGG	2 cut(s)	769, 1000
Bsa29I	ATCGAT	1 cut(s)	774
BsaBI	GATNNNNATC	1 cut(s)	992
BsaI	GGTCTC	1 cut(s)	1048
BsaJI	CCNNGG	1 cut(s)	924
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 526, 721
Bse118I	RCCGGY	2 cut(s)	75, 704
Bse1I	ACTGG	6 cut(s)	101, 124, 180, 467, 491, 560
Bse8I	GATNNNNATC	1 cut(s)	992
BseBI	CCWGG	1 cut(s)	926
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	4 cut(s)	69, 172, 924, 934
BseJI	GATNNNNATC	1 cut(s)	992
BseLI	CCNNNNNNNGG	3 cut(s)	82, 526, 721
BseMII	CTCAG	3 cut(s)	33, 471, 867
BseNI	ACTGG	6 cut(s)	101, 124, 180, 467, 491, 560
BseXI	GCAGC	2 cut(s)	450, 920
BshFI	GGCC	1 cut(s)	865
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	774
BsiSI	CCGG	4 cut(s)	76, 705, 768, 1000
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	82, 526, 721
BsmAI	GTCTC	2 cut(s)	38, 1048
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	3 cut(s)	394, 409, 800
BsnI	GGCC	1 cut(s)	865
Bso31I	GGTCTC	1 cut(s)	1048
Bsp119I	TTCGAA	2 cut(s)	71, 185
Bsp143I	GATC	4 cut(s)	361, 771, 892, 978
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	527, 1020
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	3 cut(s)	34, 472, 868
BspDI	ATCGAT	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	356, 779
BspT104I	TTCGAA	2 cut(s)	71, 185
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	1048
BsrFI	RCCGGY	2 cut(s)	75, 704
BsrI	ACTGG	6 cut(s)	101, 124, 180, 467, 491, 560
BssAI	RCCGGY	2 cut(s)	75, 704
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	4 cut(s)	361, 771, 892, 978
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	3 cut(s)	49, 319, 886
Bst6I	CTCTTC	1 cut(s)	720
BstBI	TTCGAA	2 cut(s)	71, 185
BstC8I	GCNNGC	2 cut(s)	578, 679
BstDEI	CTNAG	3 cut(s)	42, 480, 876
BstF5I	GGATG	4 cut(s)	69, 172, 924, 934
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	2 cut(s)	683, 743
BstKTI	GATC	4 cut(s)	364, 774, 895, 981
BstMAI	GTCTC	2 cut(s)	38, 1048
BstMBI	GATC	4 cut(s)	361, 771, 892, 978
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 463, 1009
BstNI	CCWGG	1 cut(s)	926
BstNSI	RCATGY	3 cut(s)	580, 812, 859
BstSCI	CCNGG	3 cut(s)	767, 924, 998
BstV1I	GCAGC	2 cut(s)	450, 920
BstV2I	GAAGAC	1 cut(s)	1059
Bsu15I	ATCGAT	1 cut(s)	774
BsuRI	GGCC	1 cut(s)	865
BsuTUI	ATCGAT	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	69, 172, 924, 934
Cac8I	GCNNGC	2 cut(s)	578, 679
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	2 cut(s)	683, 743
Cfr10I	RCCGGY	2 cut(s)	75, 704
Cfr13I	GGNCC	1 cut(s)	569
ClaI	ATCGAT	1 cut(s)	774
Csp6I	GTAC	5 cut(s)	320, 343, 517, 653, 1075
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	6 cut(s)	433, 524, 577, 809, 856, 967
CviQI	GTAC	5 cut(s)	320, 343, 517, 653, 1075
DdeI	CTNAG	3 cut(s)	42, 480, 876
DpnI	GATC	4 cut(s)	363, 773, 894, 980
DpnII	GATC	4 cut(s)	361, 771, 892, 978
EaeI	YGGCCR	1 cut(s)	863
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	1048
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	924
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	6 cut(s)	436, 527, 580, 812, 859, 970
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	6 cut(s)	432, 523, 576, 808, 855, 966
Fnu4HI	GCNGC	2 cut(s)	464, 909
FokI	GGATG	4 cut(s)	76, 159, 931, 941
Fsp4HI	GCNGC	2 cut(s)	464, 909
FspBI	CTAG	2 cut(s)	306, 1004
GlaI	GCGC	2 cut(s)	682, 742
GluI	GCNGC	2 cut(s)	464, 909
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	1 cut(s)	865
HapII	CCGG	4 cut(s)	76, 705, 768, 1000
HhaI	GCGC	2 cut(s)	683, 743
Hin1II	CATG	6 cut(s)	436, 527, 580, 812, 859, 970
Hin6I	GCGC	2 cut(s)	681, 741
HinP1I	GCGC	2 cut(s)	681, 741
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	5 cut(s)	20, 145, 559, 719, 962
HpaII	CCGG	4 cut(s)	76, 705, 768, 1000
Hpy166II	GTNNAC	2 cut(s)	549, 814
Hpy188I	TCNGA	5 cut(s)	43, 54, 153, 724, 838
Hpy188III	TCNNGA	5 cut(s)	365, 563, 896, 973, 1097
Hpy8I	GTNNAC	2 cut(s)	549, 814
HpyAV	CCTTC	7 cut(s)	54, 148, 186, 340, 439, 500, 560
HpyCH4III	ACNGT	3 cut(s)	49, 319, 886
HpyCH4V	TGCA	6 cut(s)	38, 138, 239, 409, 576, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 463, 1009
HpyF3I	CTNAG	3 cut(s)	42, 480, 876
Hsp92II	CATG	6 cut(s)	436, 527, 580, 812, 859, 970
HspAI	GCGC	2 cut(s)	681, 741
Kzo9I	GATC	4 cut(s)	361, 771, 892, 978
LmnI	GCTCC	3 cut(s)	429, 676, 940
Lsp1109I	GCAGC	2 cut(s)	450, 920
LweI	GCATC	4 cut(s)	47, 316, 909, 1081
MaeI	CTAG	2 cut(s)	306, 1004
MaeIII	GTNAC	2 cut(s)	858, 1013
MalI	GATC	4 cut(s)	363, 773, 894, 980
MboI	GATC	4 cut(s)	361, 771, 892, 978
MboII	GAAGA	8 cut(s)	140, 159, 405, 454, 737, 988, 1020, 1059
MfeI	CAATTG	1 cut(s)	1105
MluCI	AATT	7 cut(s)	113, 189, 295, 450, 900, 1049, 1105
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	2 cut(s)	205, 702
MnlI	CCTC	8 cut(s)	134, 430, 527, 634, 745, 754, 784, 952
MseI	TTAA	3 cut(s)	192, 501, 756
MspI	CCGG	4 cut(s)	76, 705, 768, 1000
MspR9I	CCNGG	3 cut(s)	769, 926, 1000
MunI	CAATTG	1 cut(s)	1105
Mva1269I	GAATGC	3 cut(s)	394, 409, 800
MvaI	CCWGG	1 cut(s)	926
MwoI	GCNNNNNNNGC	3 cut(s)	35, 463, 1009
NciI	CCSGG	2 cut(s)	769, 1000
NdeII	GATC	4 cut(s)	361, 771, 892, 978
NlaIII	CATG	6 cut(s)	436, 527, 580, 812, 859, 970
NlaIV	GGNNCC	1 cut(s)	109
NspI	RCATGY	3 cut(s)	580, 812, 859
NspV	TTCGAA	2 cut(s)	71, 185
PaeI	GCATGC	1 cut(s)	580
PctI	GAATGC	3 cut(s)	394, 409, 800
PfeI	GAWTC	4 cut(s)	20, 145, 559, 962
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	465, 910
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	569
PspPPI	RGGWCCY	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	743
RsaI	GTAC	5 cut(s)	321, 344, 518, 654, 1076
RsaNI	GTAC	5 cut(s)	320, 343, 517, 653, 1075
SaqAI	TTAA	3 cut(s)	192, 501, 756
SatI	GCNGC	2 cut(s)	464, 909
Sau3AI	GATC	4 cut(s)	361, 771, 892, 978
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	3 cut(s)	769, 926, 1000
SetI	ASST	9 cut(s)	31, 465, 481, 486, 574, 645, 756, 795, 826
SfaNI	GCATC	4 cut(s)	47, 316, 909, 1081
SfuI	TTCGAA	2 cut(s)	71, 185
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	716, 1095
SmoI	CTYRAG	2 cut(s)	716, 1095
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	7 cut(s)	113, 189, 295, 450, 900, 1049, 1105
SsiI	CCGC	2 cut(s)	527, 1020
SspMI	CTAG	2 cut(s)	306, 1004
StyD4I	CCNGG	3 cut(s)	767, 924, 998
TaaI	ACNGT	3 cut(s)	49, 319, 886
TaqI	TCGA	8 cut(s)	23, 71, 185, 333, 513, 774, 872, 986
TasI	AATT	7 cut(s)	113, 189, 295, 450, 900, 1049, 1105
TatI	WGTACW	2 cut(s)	319, 1074
TfiI	GAWTC	4 cut(s)	20, 145, 559, 962
Tru1I	TTAA	3 cut(s)	192, 501, 756
Tru9I	TTAA	3 cut(s)	192, 501, 756
TseI	GCWGC	2 cut(s)	463, 908
TspGWI	ACGGA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	4 cut(s)	113, 295, 450, 1049
XceI	RCATGY	3 cut(s)	580, 812, 859
XspI	CTAG	2 cut(s)	306, 1004
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.