Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

3458700 .. 3460665

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAGCGACAATGGTTTCGATTTCCTTGGCCAAAGATTTTTGCACTATCAAATGGGGGTCACAAAATGGTTTTCTGCGGAAACAATCTCTTACAGAAACTTCCACTACCGCCAAACTCAAGTTTTCTTGCCCTCCAATTCTTGGGGCCAGCTTTAAGAGAACAGCAATTCATGTTTTATCTCCCAACAAATCTTCACCAAGTGTGGTGATGCCAGAGTTACTTGACGCATGGAATGACGAATATGGTGGAGTCATGATTAATCCAGAAAGCTTACCAATGAGTGCAAATGCTTTTGCATCTGCTGTCCAGGCTTCTCTGTCTAACTGGAAAATGAAGGGGAAAAAGGGGGTTTGGCTCAAAATACTACAAGAGCAAGCTGATCTTGTCCCAATTGCAATTCAGGAGGGTTTCAACTTTCATCATGCTGAACCGGGATATGTTATGCTAACATATTGGATTCCAAGTGAGCCTTGTATGCTTCCTGATAGCCCTTCGCATCATATTGGTATTGGGGCTTTTGTGATCAATGACAAAAGAGAGGTTCTTGTGGTAAAAGAGAAGTGTCCTTGTACTTGCTCTGGTGTGTGGAAAATACCAACTGGTTATATCAACAAGTCTGAAGATATATTCTCTGGTGCTATAAGAGAAGTGAAAGAAGAAACTGGGGTTGCATTTGAGCAGTCAGACTTGCTGTTTGTGTGCATGCTTAAGCCTTTGTCATCTGAGATCACAATTGATGAGAAGGAAATCCAAGCTGCAAAGTGGATGCCTCTTGATGAGTTTATTGAGCAGCCATATTATGAAGATGATCACTTATCAAATAAGGTCATTGACCTATGCATTGCAGCTCATGAAGATAACTACAGTGGATTCACTGGTCATCAGCTCAACTCCAAAATTGATGGAAAATTATCCTATCTGTATTGTGACCATGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

315

Amino Acids

34.93

Weight (kDa)

5.4

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	76 - 154	7e-31	Nudix hydrolase domain
NUDIX	PF00293	167 - 265	4.2e-16	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	2 cut(s)	79, 111
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	642
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	6 cut(s)	153, 273, 380, 758, 851, 889
AluI	AGCT	6 cut(s)	153, 273, 380, 758, 851, 889
AoxI	GGCC	2 cut(s)	30, 147
ApeKI	GCWGC	4 cut(s)	5, 758, 793, 848
ArsI	GACNNNNNNTTYG	3 cut(s)	33, 680, 712
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	189, 220
BalI	TGGCCA	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	17, 745, 805, 860
BccI	CCATC	1 cut(s)	899
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	2 cut(s)	525, 811
BcnI	CCSGG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	865
BfrI	CTTAAG	1 cut(s)	710
BisI	GCNGC	4 cut(s)	6, 759, 794, 849
BlsI	GCNGC	4 cut(s)	7, 760, 795, 850
Bme1390I	CCNGG	2 cut(s)	311, 435
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	311, 435
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	4 cut(s)	201, 308, 508, 759
BmuI	ACTGGG	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	4 cut(s)	332, 607, 670, 883
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	774
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	4 cut(s)	332, 607, 670, 883
BseXI	GCAGC	4 cut(s)	17, 745, 805, 860
BshFI	GGCC	2 cut(s)	32, 149
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	32, 149
Bsp143I	GATC	4 cut(s)	382, 525, 729, 811
BspACI	CCGC	2 cut(s)	79, 111
BspANI	GGCC	2 cut(s)	32, 149
BspCNI	CTCAG	1 cut(s)	718
BspHI	TCATGA	2 cut(s)	255, 853
BspLI	GGNNCC	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	4 cut(s)	332, 607, 670, 883
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	382, 525, 729, 811
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	869
BstAFI	CTTAAG	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	151, 378, 707
BstDEI	CTNAG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	774
BstKTI	GATC	4 cut(s)	385, 528, 732, 814
BstMBI	GATC	4 cut(s)	382, 525, 729, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 478
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	2 cut(s)	309, 433
BstSFI	CTRYAG	1 cut(s)	865
BstV1I	GCAGC	4 cut(s)	17, 745, 805, 860
BsuRI	GGCC	2 cut(s)	32, 149
BtsCI	GGATG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	874, 876
Cac8I	GCNNGC	3 cut(s)	151, 378, 707
CciI	TCATGA	2 cut(s)	255, 853
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	7 cut(s)	173, 231, 256, 425, 706, 854, 935
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	1 cut(s)	726
DpnI	GATC	4 cut(s)	384, 527, 731, 813
DpnII	GATC	4 cut(s)	382, 525, 729, 811
DraIII	CACNNNGTG	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	7 cut(s)	176, 234, 259, 428, 709, 857, 938
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 457, 489
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	7 cut(s)	172, 230, 255, 424, 705, 853, 934
FbaI	TGATCA	2 cut(s)	525, 811
Fnu4HI	GCNGC	4 cut(s)	6, 759, 794, 849
FokI	GGATG	1 cut(s)	781
Fsp4HI	GCNGC	4 cut(s)	6, 759, 794, 849
GluI	GCNGC	4 cut(s)	6, 759, 794, 849
HaeIII	GGCC	2 cut(s)	32, 149
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	7 cut(s)	176, 234, 259, 428, 709, 857, 938
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	3 cut(s)	252, 460, 873
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	189, 220
Hpy188I	TCNGA	3 cut(s)	622, 688, 727
Hpy188III	TCNNGA	6 cut(s)	256, 266, 404, 485, 776, 854
HpyAV	CCTTC	3 cut(s)	331, 504, 739
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4V	TGCA	9 cut(s)	45, 287, 299, 398, 674, 705, 761, 843, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 478
HpyF3I	CTNAG	1 cut(s)	726
Hsp92II	CATG	7 cut(s)	176, 234, 259, 428, 709, 857, 938
Ksp22I	TGATCA	2 cut(s)	525, 811
Kzo9I	GATC	4 cut(s)	382, 525, 729, 811
Lsp1109I	GCAGC	4 cut(s)	17, 745, 805, 860
LweI	GCATC	4 cut(s)	201, 308, 508, 759
MaeIII	GTNAC	3 cut(s)	60, 219, 929
MalI	GATC	4 cut(s)	384, 527, 731, 813
MboI	GATC	4 cut(s)	382, 525, 729, 811
MboII	GAAGA	5 cut(s)	186, 635, 671, 818, 869
MfeI	CAATTG	2 cut(s)	393, 735
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	8 cut(s)	138, 168, 393, 399, 735, 900, 911, 940
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	144, 400, 535, 783
Mox20I	TGGCCA	1 cut(s)	32
Mph1103I	ATGCAT	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	4 cut(s)	156, 261, 711, 943
Msp20I	TGGCCA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	311, 435
MunI	CAATTG	2 cut(s)	393, 735
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	311, 478
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	4 cut(s)	382, 525, 729, 811
NlaIII	CATG	7 cut(s)	176, 234, 259, 428, 709, 857, 938
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	60, 929
NsiI	ATGCAT	1 cut(s)	845
NspI	RCATGY	1 cut(s)	709
PaeI	GCATGC	1 cut(s)	709
PagI	TCATGA	2 cut(s)	255, 853
PfeI	GAWTC	2 cut(s)	460, 873
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	7, 760, 795, 850
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SaqAI	TTAA	4 cut(s)	156, 261, 711, 943
SatI	GCNGC	4 cut(s)	6, 759, 794, 849
Sau3AI	GATC	4 cut(s)	382, 525, 729, 811
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	311, 435
SetI	ASST	9 cut(s)	155, 275, 382, 546, 760, 831, 840, 853, 891
SfaNI	GCATC	4 cut(s)	201, 308, 508, 759
SfcI	CTRYAG	1 cut(s)	865
SmlI	CTYRAG	2 cut(s)	119, 710
SmoI	CTYRAG	2 cut(s)	119, 710
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	8 cut(s)	138, 168, 393, 399, 735, 900, 911, 940
SsiI	CCGC	2 cut(s)	79, 111
StyD4I	CCNGG	2 cut(s)	309, 433
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	869
TaqI	TCGA	1 cut(s)	20
TasI	AATT	8 cut(s)	138, 168, 393, 399, 735, 900, 911, 940
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	460, 873
Tru1I	TTAA	4 cut(s)	156, 261, 711, 943
Tru9I	TTAA	4 cut(s)	156, 261, 711, 943
TscAI	CASTG	2 cut(s)	874, 883
TseFI	GTSAC	2 cut(s)	60, 929
TseI	GCWGC	4 cut(s)	5, 758, 793, 848
Tsp45I	GTSAC	2 cut(s)	60, 929
TspDTI	ATGAA	5 cut(s)	161, 350, 410, 819, 870
TspRI	CASTG	2 cut(s)	874, 883
Van91I	CCANNNNNTGG	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	710
VspI	ATTAAT	1 cut(s)	261
XceI	RCATGY	1 cut(s)	709
Zsp2I	ATGCAT	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.