Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Reverse (-)

19579257 .. 19581242

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACAACAGCAATGGGAGGCTTACATGGGCCAGTGGTTGCAGCTTCCTGGACTAAAGACTGCACTTTCCAATTGTTGTCAAATTGCTTTCTGCAGAAACCAAATTTCACCAAGACCTCCACTGCTAAGCTCAGTTTTCCTTGCATGCCATTTATTGGGGTTGCCTTCAAGAAAAAAGAAACTCATGTTGTATCTCCCAACATATCTTCACCAAGCGTGACGACGGGGTTACTTGATGCATGGGACGATGAATATGGCGGAGTCATAATGAATTCAGAGAGCCTACCCATGAGTGCAAATGCTTTTGCATCTGCTTTTCAGGCTTCTCTGTCCAACTGGAAAATGAAGGGGAAAAGAGGGGTATGGCTCAAAATACTACAAGAGCAAGCTGATCTTGTCCCAATTGCAATTCAGGAGGGTTTCAACTATCACCATGCTGAACCAGGATATGTTATGTTAACATACTGGATACCCAATGAGCCTTGCATGCTTCCTGCTAGCCCCTCACTTCAAATTGGCATTGCAGGATTTGTGATCAATGACAAAAGAGAGGTTCTTGTGGTAAAAGAGAAGTGCCCTTGTAGCTGCTCTGGTGTGTGGAAGTTGCCCACTGGTTATATCAACAAGTCTGAAGACATATTCTCTGGAGCTATCAGAGAAGTGAAAGAGGAAACTGACATTGACACAACTTTCCTGAAAATGGTAGCTTTCAGGCATGCACACCTGGTTGCATTTGAGGCGTCAGACTTGCTCTTTGTCTGCATGCTCAAGCCATTGTCTTATGACATCACAATAGATGACAAGGAAATCCAAGCTGCAAAGTGGATGCCTCTTGATGAGTTTATTGCCCAGCCATATTACCAAGATGACCCCTTGTCCAAGAAAGTCATTGAGATATGCATTGCGGCTCAAGAAGATCGCTACAGTGGCTTCACTGGTCATCAGCTCAACTCAAAAATTGATGGAAAATTATCCTACTTGTATTATGATGATTTAAAAAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

336

Amino Acids

37.39

Weight (kDa)

5.55

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	2 cut(s)	258, 905
AcsI	RAATTY	2 cut(s)	103, 271
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	740
AfiI	CCNNNNNNNGG	2 cut(s)	155, 700
AgsI	TTSAA	3 cut(s)	169, 424, 512
AhdI	GACNNNNNGTC	1 cut(s)	874
AjnI	CCWGG	3 cut(s)	47, 442, 723
AluBI	AGCT	8 cut(s)	44, 130, 389, 585, 650, 707, 815, 946
AluI	AGCT	8 cut(s)	44, 130, 389, 585, 650, 707, 815, 946
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	41, 585, 815
ApoI	RAATTY	2 cut(s)	103, 271
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	100, 201, 422
AsuNHI	GCTAGC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	53, 572, 802
BccI	CCATC	1 cut(s)	956
BciT130I	CCWGG	3 cut(s)	49, 444, 725
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	534
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	92, 922
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	4 cut(s)	42, 586, 816, 906
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	4 cut(s)	43, 587, 817, 907
Bme1390I	CCNGG	3 cut(s)	49, 444, 725
BmeRI	GACNNNNNGTC	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	29
BmrFI	CCNGG	3 cut(s)	49, 444, 725
BmsI	GCATC	3 cut(s)	226, 317, 816
BmtI	GCTAGC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	752, 894
BsaHI	GRCGYC	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 700
Bse1I	ACTGG	5 cut(s)	32, 341, 470, 616, 940
Bse3DI	GCAATG	3 cut(s)	18, 519, 900
BseBI	CCWGG	3 cut(s)	49, 444, 725
BseGI	GGATG	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	155, 700
BseMI	GCAATG	3 cut(s)	18, 519, 900
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	5 cut(s)	32, 341, 470, 616, 940
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	53, 572, 802
BseYI	CCCAGC	1 cut(s)	849
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	257, 383
BslI	CCNNNNNNNGG	2 cut(s)	155, 700
BsmFI	GGGAC	2 cut(s)	257, 383
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	391, 534, 916
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	258, 905
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	501
BsrDI	GCAATG	3 cut(s)	18, 519, 900
BsrI	ACTGG	5 cut(s)	32, 341, 470, 616, 940
BssMI	GATC	3 cut(s)	391, 534, 916
BssNI	GRCGYC	1 cut(s)	740
Bst2UI	CCWGG	3 cut(s)	49, 444, 725
Bst4CI	ACNGT	1 cut(s)	926
BstACI	GRCGYC	1 cut(s)	740
BstC8I	GCNNGC	6 cut(s)	146, 387, 488, 499, 717, 764
BstDEI	CTNAG	2 cut(s)	126, 131
BstF5I	GGATG	1 cut(s)	831
BstKTI	GATC	3 cut(s)	394, 537, 919
BstMBI	GATC	3 cut(s)	391, 534, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 487, 582, 737, 927
BstNI	CCWGG	3 cut(s)	49, 444, 725
BstNSI	RCATGY	4 cut(s)	148, 490, 719, 766
BstSCI	CCNGG	3 cut(s)	47, 442, 723
BstSFI	CTRYAG	2 cut(s)	92, 922
BstSLI	GKGCMC	1 cut(s)	578
BstV1I	GCAGC	3 cut(s)	53, 572, 802
BstV2I	GAAGAC	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	831
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	5 cut(s)	39, 120, 609, 931, 933
Cac8I	GCNNGC	6 cut(s)	146, 387, 488, 499, 717, 764
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	729
CsiI	ACCWGGT	1 cut(s)	723
CviAII	CATG	9 cut(s)	26, 145, 185, 240, 289, 434, 487, 716, 763
DdeI	CTNAG	2 cut(s)	126, 131
DpnI	GATC	3 cut(s)	393, 536, 918
DpnII	GATC	3 cut(s)	391, 534, 916
DraI	TTTAAA	1 cut(s)	996
DriI	GACNNNNNGTC	1 cut(s)	874
Eam1105I	GACNNNNNGTC	1 cut(s)	874
EciI	GGCGGA	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	3 cut(s)	47, 442, 723
EcoT22I	ATGCAT	2 cut(s)	241, 902
FaeI	CATG	9 cut(s)	29, 148, 188, 243, 292, 437, 490, 719, 766
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	257, 383
FatI	CATG	9 cut(s)	25, 144, 184, 239, 288, 433, 486, 715, 762
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	42, 586, 816, 906
FokI	GGATG	1 cut(s)	838
Fsp4HI	GCNGC	4 cut(s)	42, 586, 816, 906
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	4 cut(s)	42, 586, 816, 906
GsaI	CCCAGC	1 cut(s)	853
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	1 cut(s)	729
Hin1I	GRCGYC	1 cut(s)	740
Hin1II	CATG	9 cut(s)	29, 148, 188, 243, 292, 437, 490, 719, 766
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	1 cut(s)	261
HpaI	GTTAAC	1 cut(s)	459
HphI	GGTGA	3 cut(s)	100, 201, 422
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	4 cut(s)	277, 631, 656, 745
Hpy188III	TCNNGA	6 cut(s)	169, 413, 645, 694, 833, 911
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	175, 340
HpyCH4III	ACNGT	1 cut(s)	926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 487, 582, 737, 927
HpyF3I	CTNAG	2 cut(s)	126, 131
Hsp92I	GRCGYC	1 cut(s)	740
Hsp92II	CATG	9 cut(s)	29, 148, 188, 243, 292, 437, 490, 719, 766
Ksp22I	TGATCA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	391, 534, 916
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	3 cut(s)	53, 572, 802
LweI	GCATC	3 cut(s)	226, 317, 816
MabI	ACCWGGT	1 cut(s)	723
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	217, 228
MalI	GATC	3 cut(s)	393, 536, 918
MboI	GATC	3 cut(s)	391, 534, 916
MboII	GAAGA	3 cut(s)	198, 644, 926
MfeI	CAATTG	2 cut(s)	71, 402
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	9 cut(s)	71, 82, 103, 271, 402, 408, 513, 957, 968
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	11, 127, 350, 409, 514, 544, 661, 730, 840
Mph1103I	ATGCAT	2 cut(s)	241, 902
MseI	TTAA	2 cut(s)	458, 995
MspR9I	CCNGG	3 cut(s)	49, 444, 725
MunI	CAATTG	2 cut(s)	71, 402
MvaI	CCWGG	3 cut(s)	49, 444, 725
MwoI	GCNNNNNNNGC	5 cut(s)	320, 487, 582, 737, 927
NdeII	GATC	3 cut(s)	391, 534, 916
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	9 cut(s)	29, 148, 188, 243, 292, 437, 490, 719, 766
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	2 cut(s)	241, 902
NspI	RCATGY	4 cut(s)	148, 490, 719, 766
PaeI	GCATGC	4 cut(s)	148, 490, 719, 766
PflMI	CCANNNNNTGG	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	43, 587, 817, 907
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp6I	CCWGG	3 cut(s)	47, 442, 723
PspFI	CCCAGC	1 cut(s)	849
PspGI	CCWGG	3 cut(s)	47, 442, 723
PspPI	GGNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	458, 995
SatI	GCNGC	4 cut(s)	42, 586, 816, 906
Sau3AI	GATC	3 cut(s)	391, 534, 916
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	3 cut(s)	49, 444, 725
SduI	GDGCHC	1 cut(s)	578
SexAI	ACCWGGT	1 cut(s)	723
SfaNI	GCATC	3 cut(s)	226, 317, 816
SfcI	CTRYAG	2 cut(s)	92, 922
SmlI	CTYRAG	2 cut(s)	767, 909
SmoI	CTYRAG	2 cut(s)	767, 909
SphI	GCATGC	4 cut(s)	148, 490, 719, 766
Sse9I	AATT	9 cut(s)	71, 82, 103, 271, 402, 408, 513, 957, 968
SsiI	CCGC	2 cut(s)	258, 905
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	47, 442, 723
TaaI	ACNGT	1 cut(s)	926
TasI	AATT	9 cut(s)	71, 82, 103, 271, 402, 408, 513, 957, 968
TauI	GCSGC	1 cut(s)	908
Tru1I	TTAA	2 cut(s)	458, 995
Tru9I	TTAA	2 cut(s)	458, 995
TscAI	CASTG	5 cut(s)	39, 127, 616, 931, 940
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	3 cut(s)	41, 585, 815
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	264, 284, 359
TspRI	CASTG	5 cut(s)	39, 127, 616, 931, 940
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	103, 271
XceI	RCATGY	4 cut(s)	148, 490, 719, 766
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	2 cut(s)	241, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.