Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Reverse (-)

19826884 .. 19831860

Gene Structure 4977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCTGTAATGGAGATGAGCTTGTTTCAATCGAAATCTCTGTCTGCTTCTGAGATGGCTCAGGTAGGGAGGATGTACTCAAATTCGTTTACGAGTTTCAGGTACTTACCGGCTGGTGTCAAAGTATCTCCACAGTTCTGTTCTTGCACAGGGAATCCTCTGAAGGCTTCTTCCTTTTCTCATCCTTCTAGTTCAAACAATAGATATCTGTCAACAAACGCCATTGGTAGTGTTGGAGGGGATAAACTTGCAGCTGAAACTTCCTTATTTCAAATCTTTGGAACAAATGGTGCAAGGTCAAATCTGTTTCCTAGAGACATTAGAGTACTTGATGCCTTTGATGATGAGTATGGGGGAGTTATCGTTGATCCAGAACGACTACCAGAAAATGCAGATGCCTTTGCTTACGTCCTCCACTCCTCGCTTTCTAATTGGAAAATGGAGGAAGGTTTCCAATATCACCATGCAGAACGAGGATATGTGATGCTGACATATTGGATTCCAGAAGGACCATGCATGCTTCCCGCTAATGCTTCACATCAAGTAGGGGTTGGGGGATTTGTCATCAATAACAATAATGAGGTTCTTGTCGTACAAGAGAAACACTGTGCTCCTACATGCGTTGGTTTCTGGAAAATACCAACTGGCTTCATCCTTGAGTCGGAAGAGATTTTCACAGGAGCTGTGAGAGAAGTTAAGGAGGAAACTGGAATTGATACGGAGTTTGTGGAAGTTATAGCATTCAGGCATGCTCACAATGTTGCTTTCGAAAAGTCAGATTTGTTCTTTATCTGCATGCTAAAACCACTATCGACTCAGATTATAGTTGATGATCTTGAAATTGAAGCAGCCAAGGTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

287

Amino Acids

31.75

Weight (kDa)

5.0

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	111 - 148	3.6e-06	Nudix hydrolase domain
Nudix_hydro	PF18290	148 - 167	5.8e-06	Nudix hydrolase domain
NUDIX	PF00293	180 - 284	5e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	4 cut(s)	77, 104, 327, 594
AfiI	CCNNNNNNNGG	1 cut(s)	661
AgsI	TTSAA	5 cut(s)	29, 195, 272, 839, 845
AluBI	AGCT	3 cut(s)	21, 254, 683
AluI	AGCT	3 cut(s)	21, 254, 683
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	683
ApeKI	GCWGC	2 cut(s)	251, 848
ApoI	RAATTY	1 cut(s)	82
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	768
AvaII	GGWCC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	263, 860
BccI	CCATC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	189, 312
BisI	GCNGC	2 cut(s)	252, 849
BlsI	GCNGC	2 cut(s)	253, 850
BmcAI	AGTACT	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmsI	GCATC	3 cut(s)	322, 385, 474
Bpu10I	CCTNAGC	1 cut(s)	60
Bpu14I	TTCGAA	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	852
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	649, 712
BseDI	CCNNGG	1 cut(s)	852
BseGI	GGATG	3 cut(s)	78, 181, 651
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMII	CTCAG	3 cut(s)	42, 74, 830
BseNI	ACTGG	2 cut(s)	649, 712
BseRI	GAGGAG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	263, 860
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	740
Bsp119I	TTCGAA	1 cut(s)	768
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	367, 832
BspACI	CCGC	1 cut(s)	525
BspCNI	CTCAG	3 cut(s)	43, 73, 829
BspPI	GGATC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	649, 712
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	852
BssMI	GATC	2 cut(s)	367, 832
BssT1I	CCWWGG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	135, 608
Bst6I	CTCTTC	1 cut(s)	660
BstBI	TTCGAA	1 cut(s)	768
BstC8I	GCNNGC	3 cut(s)	518, 750, 797
BstDEI	CTNAG	3 cut(s)	51, 60, 816
BstF5I	GGATG	3 cut(s)	78, 181, 651
BstKTI	GATC	2 cut(s)	370, 835
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	367, 832
BstNSI	RCATGY	4 cut(s)	520, 621, 752, 799
BstV1I	GCAGC	2 cut(s)	263, 860
BtsCI	GGATG	3 cut(s)	78, 181, 651
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	518, 750, 797
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	4 cut(s)	76, 103, 326, 593
CviAII	CATG	6 cut(s)	464, 513, 517, 618, 749, 796
CviJI	RGCY	8 cut(s)	21, 59, 113, 167, 254, 648, 683, 851
CviKI_1	RGCY	8 cut(s)	21, 59, 113, 167, 254, 648, 683, 851
CviQI	GTAC	4 cut(s)	76, 103, 326, 593
DdeI	CTNAG	3 cut(s)	51, 60, 816
DpnI	GATC	2 cut(s)	369, 834
DpnII	GATC	2 cut(s)	367, 832
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	852
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	6 cut(s)	467, 516, 520, 621, 752, 799
FatI	CATG	6 cut(s)	463, 512, 516, 617, 748, 795
FauI	CCCGC	1 cut(s)	532
Fnu4HI	GCNGC	2 cut(s)	252, 849
FokI	GGATG	3 cut(s)	85, 168, 638
Fsp4HI	GCNGC	2 cut(s)	252, 849
FspBI	CTAG	2 cut(s)	189, 312
GluI	GCNGC	2 cut(s)	252, 849
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	6 cut(s)	467, 516, 520, 621, 752, 799
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	154, 499, 659, 814
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	90, 213
Hpy188I	TCNGA	5 cut(s)	52, 162, 664, 778, 819
Hpy188III	TCNNGA	4 cut(s)	371, 503, 631, 836
Hpy8I	GTNNAC	2 cut(s)	90, 213
HpyAV	CCTTC	4 cut(s)	157, 195, 440, 500
HpyCH4III	ACNGT	2 cut(s)	135, 608
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	7 cut(s)	147, 251, 293, 392, 467, 516, 795
HpyF3I	CTNAG	3 cut(s)	51, 60, 816
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	467, 516, 520, 621, 752, 799
Kzo9I	GATC	2 cut(s)	367, 832
LmnI	GCTCC	2 cut(s)	616, 680
Lsp1109I	GCAGC	2 cut(s)	263, 860
LweI	GCATC	3 cut(s)	322, 385, 474
MaeI	CTAG	2 cut(s)	189, 312
MaeII	ACGT	1 cut(s)	408
MalI	GATC	2 cut(s)	369, 834
MboI	GATC	2 cut(s)	367, 832
MboII	GAAGA	2 cut(s)	162, 677
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	4 cut(s)	82, 430, 711, 840
MlyI	GAGTC	2 cut(s)	668, 808
MmeI	TCCRAC	2 cut(s)	214, 642
MnlI	CCTC	9 cut(s)	63, 168, 230, 422, 430, 436, 467, 574, 694
Mph1103I	ATGCAT	1 cut(s)	518
MseI	TTAA	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	740
NdeII	GATC	2 cut(s)	367, 832
NlaIII	CATG	6 cut(s)	467, 516, 520, 621, 752, 799
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	4 cut(s)	520, 621, 752, 799
NspV	TTCGAA	1 cut(s)	768
PaeI	GCATGC	3 cut(s)	520, 752, 799
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	154, 499
PkrI	GCNGC	2 cut(s)	253, 850
PleI	GAGTC	2 cut(s)	667, 808
PpsI	GAGTC	2 cut(s)	667, 808
PspPI	GGNCC	1 cut(s)	509
PstNI	CAGNNNCTG	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	4 cut(s)	77, 104, 327, 594
RsaNI	GTAC	4 cut(s)	76, 103, 326, 593
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	2 cut(s)	252, 849
Sau3AI	GATC	2 cut(s)	367, 832
Sau96I	GGNCC	1 cut(s)	509
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	2 cut(s)	668, 808
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	322, 385, 474
SfuI	TTCGAA	1 cut(s)	768
SinI	GGWCC	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	3 cut(s)	520, 752, 799
Sse9I	AATT	4 cut(s)	82, 430, 711, 840
SsiI	CCGC	1 cut(s)	525
SspMI	CTAG	2 cut(s)	189, 312
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	2 cut(s)	135, 608
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	3 cut(s)	32, 768, 812
TasI	AATT	4 cut(s)	82, 430, 711, 840
TatI	WGTACW	2 cut(s)	75, 325
TfiI	GAWTC	2 cut(s)	154, 499
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	1 cut(s)	611
TseI	GCWGC	2 cut(s)	251, 848
TspDTI	ATGAA	1 cut(s)	640
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	4 cut(s)	520, 621, 752, 799
XspI	CTAG	2 cut(s)	189, 312
ZrmI	AGTACT	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.