Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

5227374 .. 5229364

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAGTGGCAATGATTTCTATTTCCTTGACCCAAGATTATTGCTGTTTCAAATGGGGGTTGCCAAATGGTTTTCTGCGGAAACAAATTCTTACAGAAACCTCCACTACTGCCAAACTCAAGTTTTCGTGCCCTCCAATTCTTGAAGCCAGCTTTAAGAAAACAGCAATTCATGTTTTATCTCCCAACAAATCTTCACCAAGCGTGATGATGCCAGAGTTACTTGACGGATGGAACGACGAATATGGTGGAGTCATAATTAATCCAGAGAGCTTACCCATGAGTGCAAATGCTTTTGCATCTGCTGTTCAGGCTTCTCTGTCCAACTGGAAAATGAAGGGGAAAAAGGGGGTATGGCTCAAAATACTAAAAGAGCAAGCTGATCTTGTCCCAATTGCAATTCAGGAGGGTTTCAACTTTCACCATGCTCAACCAGGATATGTTATGCTAACATACTGGATTCCAAGTGAGCCTTGCATGCTTCCCGATAGCCCTTCACATCATATTGGTATTGGAGCTTTTGTGATCAATGACAAAAGAGAGGTTCTTGTGGTAAAAGAGAAGTGTCCTTGTAGCTGCTCTGGTGTGTGGAAATTACCAACTGGTTATATCAACAAGTCTGAAGATATATTCTCTGGTGCTATAAGAGAAGTGAAAGAAGAAACTGGGATTGAGACAACTTTCCTTAAAATGGTAGCTTTCAGACATGCACACAAGGTTGCATTTGAGCAGTCGGACTTGCTGTTTGTGTGCATGCTTAAGCCTTTGTCATCTGAGATCATAATTGATGAGAAGGAAATCCAATCTGCAAAGTGGATGGCTCTTGATGAGTTTATTGAGCAGCCATATTATGAAGATGACCACTTGTCAAATAAGATCATTGACATATGCATTGCGGCTCATGAAGACAACTACAGTGGATTCACTGGTCATCAGCTCAACTCCAAAATTGATGGAAGATTATCCTATCTGTATTGTAACCATGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

330

Amino Acids

37.03

Weight (kDa)

5.89

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	75 - 154	6.4e-31	Nudix hydrolase domain
NUDIX	PF00293	167 - 281	8.5e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 896
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	691
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	3 cut(s)	52, 146, 415
AhdI	GACNNNNNGTC	1 cut(s)	865
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	7 cut(s)	153, 273, 380, 518, 576, 698, 937
AluI	AGCT	7 cut(s)	153, 273, 380, 518, 576, 698, 937
Alw26I	GTCTC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	576, 841
ApoI	RAATTY	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AseI	ATTAAT	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	189, 413
BaeGI	GKGCMC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	912
BbvI	GCAGC	2 cut(s)	563, 853
BccI	CCATC	3 cut(s)	225, 811, 947
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	668
BfmI	CTRYAG	1 cut(s)	913
BfrI	CTTAAG	1 cut(s)	758
BisI	GCNGC	3 cut(s)	577, 842, 897
BlsI	GCNGC	3 cut(s)	578, 843, 898
Bme1390I	CCNGG	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	865
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	201, 308
BmuI	ACTGGG	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	5 cut(s)	332, 461, 607, 670, 931
Bse3DI	GCAATG	2 cut(s)	18, 891
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	236, 822
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMI	GCAATG	2 cut(s)	18, 891
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	5 cut(s)	332, 461, 607, 670, 931
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	563, 853
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	382, 525, 777, 876
BspACI	CCGC	2 cut(s)	79, 896
BspCNI	CTCAG	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	901
BspTI	CTTAAG	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	18, 891
BsrI	ACTGG	5 cut(s)	332, 461, 607, 670, 931
BssMI	GATC	4 cut(s)	382, 525, 777, 876
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	917
BstAFI	CTTAAG	1 cut(s)	758
BstC8I	GCNNGC	4 cut(s)	151, 378, 479, 755
BstDEI	CTNAG	1 cut(s)	774
BstF5I	GGATG	2 cut(s)	236, 822
BstKTI	GATC	4 cut(s)	385, 528, 780, 879
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	4 cut(s)	382, 525, 777, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 478
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	3 cut(s)	481, 710, 757
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	913
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	563, 853
BstV2I	GAAGAC	1 cut(s)	912
BtsCI	GGATG	2 cut(s)	236, 822
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 922, 924
Cac8I	GCNNGC	4 cut(s)	151, 378, 479, 755
CciI	TCATGA	1 cut(s)	901
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	8 cut(s)	173, 280, 425, 478, 707, 754, 902, 983
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	4 cut(s)	384, 527, 779, 878
DpnII	GATC	4 cut(s)	382, 525, 777, 876
DriI	GACNNNNNGTC	1 cut(s)	865
Eam1105I	GACNNNNNGTC	1 cut(s)	865
Eco57I	CTGAAG	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	893
FaeI	CATG	8 cut(s)	176, 283, 428, 481, 710, 757, 905, 986
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 457, 489
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	8 cut(s)	172, 279, 424, 477, 706, 753, 901, 982
FauNDI	CATATG	1 cut(s)	887
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	577, 842, 897
FokI	GGATG	2 cut(s)	243, 829
Fsp4HI	GCNGC	3 cut(s)	577, 842, 897
GluI	GCNGC	3 cut(s)	577, 842, 897
Hin1II	CATG	8 cut(s)	176, 283, 428, 481, 710, 757, 905, 986
HinfI	GANTC	3 cut(s)	252, 460, 921
HphI	GGTGA	2 cut(s)	189, 413
Hpy188I	TCNGA	4 cut(s)	622, 704, 736, 775
Hpy188III	TCNNGA	6 cut(s)	143, 266, 404, 485, 824, 902
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	331, 504, 787
HpyCH4III	ACNGT	1 cut(s)	917
HpyCH4V	TGCA	9 cut(s)	287, 299, 398, 477, 710, 722, 753, 809, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 478
HpyF3I	CTNAG	1 cut(s)	774
Hsp92II	CATG	8 cut(s)	176, 283, 428, 481, 710, 757, 905, 986
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	382, 525, 777, 876
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	2 cut(s)	563, 853
LweI	GCATC	2 cut(s)	201, 308
MaeIII	GTNAC	2 cut(s)	219, 977
MalI	GATC	4 cut(s)	384, 527, 779, 878
MboI	GATC	4 cut(s)	382, 525, 777, 876
MboII	GAAGA	6 cut(s)	186, 635, 671, 866, 917, 969
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	2 cut(s)	348, 714
MnlI	CCTC	4 cut(s)	112, 144, 400, 535
Mph1103I	ATGCAT	1 cut(s)	893
MseI	TTAA	5 cut(s)	156, 261, 687, 759, 991
MspCI	CTTAAG	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	311, 478
NdeI	CATATG	1 cut(s)	887
NdeII	GATC	4 cut(s)	382, 525, 777, 876
NlaIII	CATG	8 cut(s)	176, 283, 428, 481, 710, 757, 905, 986
NsiI	ATGCAT	1 cut(s)	893
NspI	RCATGY	3 cut(s)	481, 710, 757
PaeI	GCATGC	2 cut(s)	481, 757
PagI	TCATGA	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	460, 921
PkrI	GCNGC	3 cut(s)	578, 843, 898
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
SaqAI	TTAA	5 cut(s)	156, 261, 687, 759, 991
SatI	GCNGC	3 cut(s)	577, 842, 897
Sau3AI	GATC	4 cut(s)	382, 525, 777, 876
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	201, 308
SfcI	CTRYAG	1 cut(s)	913
SmlI	CTYRAG	2 cut(s)	119, 758
SmoI	CTYRAG	2 cut(s)	119, 758
SphI	GCATGC	2 cut(s)	481, 757
SsiI	CCGC	2 cut(s)	79, 896
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	917
TauI	GCSGC	1 cut(s)	899
TfiI	GAWTC	2 cut(s)	460, 921
Tru1I	TTAA	5 cut(s)	156, 261, 687, 759, 991
Tru9I	TTAA	5 cut(s)	156, 261, 687, 759, 991
TscAI	CASTG	3 cut(s)	12, 922, 931
TseI	GCWGC	2 cut(s)	576, 841
TspDTI	ATGAA	4 cut(s)	161, 350, 867, 918
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	3 cut(s)	12, 922, 931
Vha464I	CTTAAG	1 cut(s)	758
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	3 cut(s)	481, 710, 757
Zsp2I	ATGCAT	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.