Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

15935344 .. 15937540

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1200400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATTGCAGCTTCCTGGACTAAACATCGCACTTTCCAGTGGTTGCCAAATGGATTTCGGCAGAAATGTTTTCTCTCAAAGAGCTCAACTGCTAAGCTCAATTTTCACGGCATGCCATTTCTTGGGGGTGGCTTCAAGAAAACAGCAGCAACTCATGTTGCATCTCCCAACTCATCTTCCCAAAGCGTGACAACGGAGTTACTTGATGCATGGAACGATGAATATGGTGGAGTCATAATTAATTCGGAGAGCCTTCCCACGAGTGCAAATGCTTTTGCATCCGCTTTTCAGGCTTCCTTGTCCAACTGGAAAATGAAGGGAAAAAGGGGGGTATGGCTCAAAATACTGCAAGAGCAAGCTGATCTTGTTCCAATTGCAGTTCAGGGTTTCAACTATCACCATGCTGAACCAGGATATATTATGCTAACATACTGGATTCCGAAGGAACCATGTGTGCTTCCTGCTAGCCCCTCACATCAAATTGGTATTGCAGGATTTGTGATCAACAAAAAAAGAGAGGTTCTCGTGGTAAAAGAGAAGTGCCCTTGTAGTTGCTCCGGTGTGTGGAAGTTGCCCACTGGCTATATCAACAAGTCTGAAGACATATTTTCTGGAGCTATCCGAGAAGTAAAAGAAGAAACTGGTATTGACACAACTTTCCTAAAAATGGTAGCTTTCAGGCATGCACACTTGGTAGCATTTGACCAGTCAGACTTGCTCTTTGTCTGCATGCTTAAGCCATTATCCTACGAGGTCACAGTAGATGACAAGGAAATCCAAGCTGCAAAGTGGATGCCTGTTGATGAGTTTATTGCCCAACCATATTACCAAGATGATTGCTTGTCAAAGAAAGTCATTGATATATGCATGGCGGCTAAAGAAGATCGTTACAGTGGATTCATTGGTCATCAGCTCAACTCCAAAATTGATGGAAAATTGTCTTACTTGTATTATGATGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

322

Amino Acids

36.02

Weight (kDa)

7.58

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	69 - 146	7.1e-28	Nudix hydrolase domain
NUDIX	PF00293	159 - 272	9.6e-18	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AciI	CCGC	2 cut(s)	282, 872
AcuI	CTGAAG	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	122, 564, 667
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	2 cut(s)	136, 391
AjnI	CCWGG	2 cut(s)	14, 409
AluBI	AGCT	8 cut(s)	11, 84, 97, 359, 617, 674, 782, 913
AluI	AGCT	8 cut(s)	11, 84, 97, 359, 617, 674, 782, 913
Alw21I	GWGCWC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	8, 146, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AseI	ATTAAT	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	389
AsuNHI	GCTAGC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	86
BauI	CACGAG	2 cut(s)	259, 524
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	20, 158, 769
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	16, 411
BclI	TGATCA	1 cut(s)	501
BfaI	CTAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	4 cut(s)	9, 147, 783, 873
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	10, 148, 784, 874
Bme1390I	CCNGG	2 cut(s)	16, 411
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	16, 411
BmsI	GCATC	4 cut(s)	170, 196, 287, 783
BmtI	GCTAGC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	606
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 564, 667
Bse1I	ACTGG	6 cut(s)	37, 311, 437, 583, 646, 706
BseBI	CCWGG	2 cut(s)	16, 411
BseGI	GGATG	2 cut(s)	278, 798
BseLI	CCNNNNNNNGG	3 cut(s)	122, 564, 667
BseNI	ACTGG	6 cut(s)	37, 311, 437, 583, 646, 706
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	20, 158, 769
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	122, 564, 667
Bsp1286I	GDGCHC	2 cut(s)	86, 545
Bsp143I	GATC	3 cut(s)	361, 501, 883
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	2 cut(s)	282, 872
BspLI	GGNNCC	1 cut(s)	447
BspOI	GCTAGC	1 cut(s)	468
BspTI	CTTAAG	1 cut(s)	734
BsrI	ACTGG	6 cut(s)	37, 311, 437, 583, 646, 706
BssMI	GATC	3 cut(s)	361, 501, 883
BssSI	CACGAG	2 cut(s)	259, 524
Bst2BI	CACGAG	2 cut(s)	259, 524
Bst2UI	CCWGG	2 cut(s)	16, 411
Bst4CI	ACNGT	2 cut(s)	760, 893
BstAFI	CTTAAG	1 cut(s)	734
BstC8I	GCNNGC	5 cut(s)	113, 357, 466, 684, 731
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	278, 798
BstKTI	GATC	3 cut(s)	364, 504, 886
BstMBI	GATC	3 cut(s)	361, 501, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	16, 411
BstNSI	RCATGY	3 cut(s)	115, 686, 733
BstSCI	CCNGG	2 cut(s)	14, 409
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	20, 158, 769
BstV2I	GAAGAC	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	278, 798
BtsIMutI	CAGTG	3 cut(s)	44, 576, 898
Cac8I	GCNNGC	5 cut(s)	113, 357, 466, 684, 731
CviAII	CATG	8 cut(s)	112, 155, 210, 401, 450, 683, 730, 868
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	3 cut(s)	363, 503, 885
DpnII	GATC	3 cut(s)	361, 501, 883
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	618
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	14, 409
EcoT22I	ATGCAT	2 cut(s)	211, 869
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	8 cut(s)	115, 158, 213, 404, 453, 686, 733, 871
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	8 cut(s)	111, 154, 209, 400, 449, 682, 729, 867
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	9, 147, 783, 873
FokI	GGATG	2 cut(s)	265, 805
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	9, 147, 783, 873
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	4 cut(s)	9, 147, 783, 873
GsuI	CTGGAG	1 cut(s)	633
HapII	CCGG	1 cut(s)	558
Hin1II	CATG	8 cut(s)	115, 158, 213, 404, 453, 686, 733, 871
HinfI	GANTC	3 cut(s)	231, 436, 897
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	5 cut(s)	247, 441, 598, 623, 712
Hpy188III	TCNNGA	2 cut(s)	136, 612
HpyAV	CCTTC	3 cut(s)	263, 310, 436
HpyCH4III	ACNGT	2 cut(s)	760, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	8 cut(s)	115, 158, 213, 404, 453, 686, 733, 871
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	361, 501, 883
LmnI	GCTCC	2 cut(s)	560, 614
Lsp1109I	GCAGC	3 cut(s)	20, 158, 769
LweI	GCATC	4 cut(s)	170, 196, 287, 783
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	4 cut(s)	187, 198, 754, 887
MalI	GATC	3 cut(s)	363, 503, 885
MboI	GATC	3 cut(s)	361, 501, 883
MboII	GAAGA	4 cut(s)	168, 611, 647, 893
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	86, 545
MluCI	AATT	7 cut(s)	100, 237, 241, 372, 480, 924, 935
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	3 cut(s)	481, 511, 745
Mph1103I	ATGCAT	2 cut(s)	211, 869
MseI	TTAA	2 cut(s)	240, 735
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	2 cut(s)	16, 411
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	16, 411
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	3 cut(s)	361, 501, 883
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	8 cut(s)	115, 158, 213, 404, 453, 686, 733, 871
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	187, 754
NsiI	ATGCAT	2 cut(s)	211, 869
NspI	RCATGY	3 cut(s)	115, 686, 733
PaeI	GCATGC	3 cut(s)	115, 686, 733
PfeI	GAWTC	2 cut(s)	436, 897
PflMI	CCANNNNNTGG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	10, 148, 784, 874
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	14, 409
PspGI	CCWGG	2 cut(s)	14, 409
PspN4I	GGNNCC	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	240, 735
SatI	GCNGC	4 cut(s)	9, 147, 783, 873
Sau3AI	GATC	3 cut(s)	361, 501, 883
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	16, 411
SduI	GDGCHC	2 cut(s)	86, 545
SfaNI	GCATC	4 cut(s)	170, 196, 287, 783
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SphI	GCATGC	3 cut(s)	115, 686, 733
Sse9I	AATT	7 cut(s)	100, 237, 241, 372, 480, 924, 935
SsiI	CCGC	2 cut(s)	282, 872
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	14, 409
TaaI	ACNGT	2 cut(s)	760, 893
TasI	AATT	7 cut(s)	100, 237, 241, 372, 480, 924, 935
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	2 cut(s)	436, 897
Tru1I	TTAA	2 cut(s)	240, 735
Tru9I	TTAA	2 cut(s)	240, 735
TscAI	CASTG	3 cut(s)	44, 583, 898
TseFI	GTSAC	2 cut(s)	187, 754
TseI	GCWGC	3 cut(s)	8, 146, 782
Tsp45I	GTSAC	2 cut(s)	187, 754
TspDTI	ATGAA	3 cut(s)	234, 329, 889
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	3 cut(s)	44, 583, 898
Van91I	CCANNNNNTGG	1 cut(s)	122
Vha464I	CTTAAG	1 cut(s)	734
VspI	ATTAAT	1 cut(s)	240
XceI	RCATGY	3 cut(s)	115, 686, 733
XspI	CTAG	1 cut(s)	465
Zsp2I	ATGCAT	2 cut(s)	211, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.