Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Reverse (-)

17969103 .. 17972921

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCTGTATTAATGGAGATGAGCTTGTTTCAATCGAAATCTATGTCTGCTTCTGAAATGGCTCAGGTGGGGAGGATGTACTCAAATTCGTTTACGAGTTTCAGGTACTTACCGGTTGGTATCAAAGTATTTCCACAGTTTTGTTCTTGCGCCTGCACAGGGAATCCTCTGAAGGCTTCTTCATTTTCTCATCCTTCTAGTTCAAACAATAGATATCTGTCAACAAACGCCATTGGTAGTGTTGGAGGGGATAAACTTGCAGCTGAAACTTCCTTGTTTCAAATCTTTGGAACAAATGGTGCAAGGTCAAATCTGTTTCCTAGAGACATTAGAGTACTTGATGCCTTTGATGATGAGTATGGGGGAGTTATCGTTGATCCAGAACGACTACCAGAAAATGCAGATGCCTTTGCTTACATCCTCCACTCCTCGCTTTCCAATTGGAAAATGGAGGGAAAGAAGGGAATTTGGCTTAAGCTGCCGGTAGAACGAGCTGAGCTTGTTCCAGTTGCTGTTAAGGAAGGTTTCCAATATCACCATGCAGAACGAGGATATGTGATGCTGACATATTGGATTCCAGAAGGACCATGCATGCTTCCCGCTAATGCTTCACATCAAGTAGGGGTTGGGGGATTTGTCATCAATGACAATAATGAGGTTCTTGTCGTACAAGAGAAACACTGTGCTCCTACATGCGTTGGTTTCTGGAAAATACCAACTGGCTTCATCCTTGAGTCGGAAGAGATTTTCACAGGAGCTGTGAGAGAAGTTAAGGAGGAAACTGGGGTAAGAATGTGTATTTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

269

Amino Acids

29.78

Weight (kDa)

5.72

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	114 - 192	4.8e-31	Nudix hydrolase domain
NUDIX	PF00293	205 - 264	2.1e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	85, 465
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	4 cut(s)	80, 107, 336, 669
AfiI	CCNNNNNNNGG	2 cut(s)	159, 736
AflII	CTTAAG	1 cut(s)	473
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	32, 204, 281
AluBI	AGCT	6 cut(s)	24, 263, 478, 494, 499, 758
AluI	AGCT	6 cut(s)	24, 263, 478, 494, 499, 758
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	2 cut(s)	512, 758
ApeKI	GCWGC	2 cut(s)	260, 478
ApoI	RAATTY	2 cut(s)	85, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AseI	ATTAAT	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	272, 465
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	198, 321
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	2 cut(s)	261, 479
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	2 cut(s)	262, 480
BmcAI	AGTACT	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	3 cut(s)	331, 394, 549
BmuI	ACTGGG	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	752
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 736
Bse118I	RCCGGY	2 cut(s)	112, 481
Bse1I	ACTGG	3 cut(s)	506, 724, 787
BseGI	GGATG	4 cut(s)	81, 190, 417, 726
BseLI	CCNNNNNNNGG	2 cut(s)	159, 736
BseMII	CTCAG	2 cut(s)	77, 486
BseNI	ACTGG	3 cut(s)	506, 724, 787
BseRI	GAGGAG	1 cut(s)	418
BseXI	GCAGC	2 cut(s)	272, 465
BsgI	GTGCAG	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	2 cut(s)	113, 482
BslI	CCNNNNNNNGG	2 cut(s)	159, 736
BsmAI	GTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	1 cut(s)	600
BspCNI	CTCAG	2 cut(s)	76, 487
BspPI	GGATC	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	473
BsrFI	RCCGGY	2 cut(s)	112, 481
BsrI	ACTGG	3 cut(s)	506, 724, 787
BssAI	RCCGGY	2 cut(s)	112, 481
BssMI	GATC	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	138, 683
Bst6I	CTCTTC	1 cut(s)	735
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	154, 593
BstDEI	CTNAG	2 cut(s)	63, 495
BstF5I	GGATG	4 cut(s)	81, 190, 417, 726
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNSI	RCATGY	2 cut(s)	595, 696
BstV1I	GCAGC	2 cut(s)	272, 465
BtsCI	GGATG	4 cut(s)	81, 190, 417, 726
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	154, 593
CaiI	CAGNNNCTG	2 cut(s)	512, 758
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	2 cut(s)	112, 481
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	79, 106, 335, 668
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	4 cut(s)	539, 588, 592, 693
CviQI	GTAC	4 cut(s)	79, 106, 335, 668
DdeI	CTNAG	2 cut(s)	63, 495
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	215
EcoT22I	ATGCAT	1 cut(s)	593
FaeI	CATG	4 cut(s)	542, 591, 595, 696
FaiI	YATR	8 cut(s)	44, 360, 540, 555, 568, 589, 593, 694
FatI	CATG	4 cut(s)	538, 587, 591, 692
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	261, 479
FokI	GGATG	4 cut(s)	88, 177, 404, 713
Fsp4HI	GCNGC	2 cut(s)	261, 479
FspBI	CTAG	2 cut(s)	198, 321
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	2 cut(s)	261, 479
HapII	CCGG	2 cut(s)	113, 482
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	542, 591, 595, 696
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	3 cut(s)	163, 574, 734
HpaII	CCGG	2 cut(s)	113, 482
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	93, 222
Hpy188I	TCNGA	3 cut(s)	55, 171, 739
Hpy188III	TCNNGA	3 cut(s)	380, 578, 706
Hpy8I	GTNNAC	2 cut(s)	93, 222
HpyAV	CCTTC	5 cut(s)	166, 204, 454, 515, 575
HpyCH4III	ACNGT	2 cut(s)	138, 683
HpyCH4V	TGCA	6 cut(s)	156, 260, 302, 401, 542, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	2 cut(s)	63, 495
Hsp92II	CATG	4 cut(s)	542, 591, 595, 696
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	691, 755
Lsp1109I	GCAGC	2 cut(s)	272, 465
LweI	GCATC	3 cut(s)	331, 394, 549
MaeI	CTAG	2 cut(s)	198, 321
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	171, 752
MfeI	CAATTG	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	3 cut(s)	85, 439, 465
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	2 cut(s)	223, 717
MnlI	CCTC	9 cut(s)	66, 177, 239, 431, 439, 445, 542, 649, 769
Mph1103I	ATGCAT	1 cut(s)	593
MseI	TTAA	4 cut(s)	11, 474, 516, 771
MspA1I	CMGCKG	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	2 cut(s)	113, 482
MunI	CAATTG	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	4 cut(s)	542, 591, 595, 696
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	2 cut(s)	595, 696
PaeI	GCATGC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	163, 574
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	262, 480
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
PshBI	ATTAAT	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	584
PstNI	CAGNNNCTG	2 cut(s)	512, 758
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	4 cut(s)	80, 107, 336, 669
RsaNI	GTAC	4 cut(s)	79, 106, 335, 668
SaqAI	TTAA	4 cut(s)	11, 474, 516, 771
SatI	GCNGC	2 cut(s)	261, 479
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	743
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	3 cut(s)	331, 394, 549
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	473, 731
SmoI	CTYRAG	2 cut(s)	473, 731
SphI	GCATGC	1 cut(s)	595
Sse9I	AATT	3 cut(s)	85, 439, 465
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	2 cut(s)	198, 321
TaaI	ACNGT	2 cut(s)	138, 683
TaqI	TCGA	1 cut(s)	35
TasI	AATT	3 cut(s)	85, 439, 465
TatI	WGTACW	2 cut(s)	78, 334
TfiI	GAWTC	2 cut(s)	163, 574
Tru1I	TTAA	4 cut(s)	11, 474, 516, 771
Tru9I	TTAA	4 cut(s)	11, 474, 516, 771
TscAI	CASTG	1 cut(s)	686
TseI	GCWGC	2 cut(s)	260, 478
TspDTI	ATGAA	2 cut(s)	171, 715
TspRI	CASTG	1 cut(s)	686
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	2 cut(s)	85, 465
XceI	RCATGY	2 cut(s)	595, 696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	198, 321
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.