Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

7618066 .. 7621655

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1058500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGATGAGTTTGTTTGAATCGAAGTCTATGTCTGTATCTGTATCTGAGACGGTTCAGATGGGAAGAAGATTGTATTTGAACCCGTTTTCGAGTTCCCGGCACATACCAGCTGCTGTTAAATTCTTTCCACACTTGTGTTCTTGCAGGGGGTTTCGTCTCAAAGCTTGTTATTCTTCTGAGCCTTCTAGTTCAAGCAATAGGTATCTGTCAGTTAACGCTATTGGTTCAGTTGGTGGAGATAAACTTGCAGCTGATACTCGTTTGTTTCAAATAATTAATGGAACGAATGGCTCAAGACCGAATCTGTATTCTACAGAGATAAGGGTACTTGATGCTTTTGATGATGAGTATGGTGGAGTTATAGTTGATCCAGAACGATTACCAGAAAACCCAAATGCCTTTGCTTGTATCCTACATTCCTCACTCTCTCGTTGGAAAATGGAGGGAAAGAAGGGAATTTGGCTAAAGCTGCCGGTAGAAAAAGCTGAGCTTGTTCCGGTTGCTGTTAAGGAAGGCTTCCAATACCACCATGCCGAACGAGGTTATGTGATGTTGACATACTGGATCCCGGAGGGACCTTGCATGCTTCCTGCCAATGCATCACATCAAGTAGGGGTTGGAGGATTCGTCATCAATGACAATAATGAGGTTCTTGTCGTACAAGAGAAATATTGTTCTCCAACATGCGAAGGCTTTTGGAAATTACCTACCGGCTTCATCCTTGAGTCGGAGGAGATATTCACAGGAGCTGTGAGAGAAGTTAAGGAGGAAACCGGGATCGATACCGAGTTCGTTGAAGTTATAGCGTTCAGGCATGCTCACAATGTAACTTTTGAAAAGTCGGATTTGTTCTTCATCTGCATGTTACGACCGCTATCAACTGAGATTATAGTTGATGATCTTGAAATTCAAGCAGCCAAGTGGATGCCCCTAGATGAATTTGTCGAGCAACCACTGATACAAGAAGATTCCATGTTCAAGAAGGTCATTTCTATATGCATTGCGCGGCTGGGGAAGCGTTACTGCGGTTTATCTTCTCATCAAGTGGTCTCCAAATTTGATGGCAGGTTATCTTCCTTGTACTATAACGTTGTTGACACACAAGATTCCAACTGTTCAACCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

377

Amino Acids

42.21

Weight (kDa)

5.48

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	112 - 190	8.7e-31	Nudix hydrolase domain
NUDIX	PF00293	203 - 320	1.1e-20	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1059
AccII	CGCG	1 cut(s)	1009
AciI	CCGC	3 cut(s)	875, 1009, 1029
AclI	AACGTT	1 cut(s)	1092
AclWI	GGATC	4 cut(s)	365, 562, 575, 788
AcsI	RAATTY	5 cut(s)	122, 459, 909, 941, 1058
AfaI	GTAC	3 cut(s)	330, 663, 1085
AfiI	CCNNNNNNNGG	1 cut(s)	730
AleI	CACNNNNGTG	1 cut(s)	136
AluBI	AGCT	7 cut(s)	113, 167, 254, 472, 488, 493, 752
AluI	AGCT	7 cut(s)	113, 167, 254, 472, 488, 493, 752
Alw26I	GTCTC	3 cut(s)	44, 164, 1057
AlwI	GGATC	4 cut(s)	365, 562, 575, 788
AlwNI	CAGNNNCTG	2 cut(s)	116, 752
ApeKI	GCWGC	4 cut(s)	113, 251, 472, 917
ApoI	RAATTY	5 cut(s)	122, 459, 909, 941, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	3 cut(s)	100, 572, 778
AvaII	GGWCC	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	100, 263, 459, 929
BccI	CCATC	2 cut(s)	55, 1058
BciVI	GTATCC	1 cut(s)	422
BcnI	CCSGG	3 cut(s)	100, 572, 778
BcoDI	GTCTC	3 cut(s)	44, 164, 1057
BfaI	CTAG	2 cut(s)	189, 935
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	1059
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	5 cut(s)	114, 252, 473, 918, 1010
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	5 cut(s)	115, 253, 474, 919, 1011
Bme1390I	CCNGG	3 cut(s)	100, 572, 778
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	569, 579
BmrFI	CCNGG	3 cut(s)	100, 572, 778
BmsI	GCATC	3 cut(s)	325, 611, 918
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	280, 746
BpuMI	CCSGG	3 cut(s)	100, 572, 778
Bsa29I	ATCGAT	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	1057
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	2 cut(s)	475, 713
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	1002
BseCI	ATCGAT	1 cut(s)	783
BseGI	GGATG	2 cut(s)	720, 933
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	4 cut(s)	39, 171, 480, 876
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	100, 263, 459, 929
BseYI	CCCAGC	1 cut(s)	1012
Bsh1236I	CGCG	1 cut(s)	1009
Bsh1285I	CGRYCG	1 cut(s)	875
BshVI	ATCGAT	1 cut(s)	783
BsiEI	CGRYCG	1 cut(s)	875
BsiSI	CCGG	6 cut(s)	100, 476, 500, 572, 714, 777
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	3 cut(s)	44, 164, 1057
BsmBI	CGTCTC	2 cut(s)	44, 164
BsmFI	GGGAC	1 cut(s)	591
Bso31I	GGTCTC	1 cut(s)	1057
Bsp143I	GATC	4 cut(s)	370, 567, 780, 901
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	3 cut(s)	875, 1009, 1029
BspCNI	CTCAG	4 cut(s)	40, 172, 481, 877
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	1 cut(s)	1009
BspLI	GGNNCC	2 cut(s)	569, 579
BspMI	ACCTGC	1 cut(s)	1059
BspPI	GGATC	4 cut(s)	365, 562, 575, 788
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	1 cut(s)	1002
BsrFI	RCCGGY	2 cut(s)	475, 713
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	2 cut(s)	475, 713
BssMI	GATC	4 cut(s)	370, 567, 780, 901
Bst4CI	ACNGT	2 cut(s)	55, 1118
BstC8I	GCNNGC	2 cut(s)	587, 819
BstDEI	CTNAG	4 cut(s)	48, 180, 489, 885
BstF5I	GGATG	2 cut(s)	720, 933
BstFNI	CGCG	1 cut(s)	1009
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	4 cut(s)	373, 570, 783, 904
BstMAI	GTCTC	3 cut(s)	44, 164, 1057
BstMBI	GATC	4 cut(s)	370, 567, 780, 901
BstMCI	CGRYCG	1 cut(s)	875
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 1018
BstNSI	RCATGY	4 cut(s)	589, 690, 821, 868
BstSCI	CCNGG	3 cut(s)	98, 570, 776
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	1009
BstV1I	GCAGC	4 cut(s)	100, 263, 459, 929
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
Bsu15I	ATCGAT	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	422
BsuTUI	ATCGAT	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	720, 933
BtsIMutI	CAGTG	1 cut(s)	956
BveI	ACCTGC	1 cut(s)	1059
Cac8I	GCNNGC	2 cut(s)	587, 819
CaiI	CAGNNNCTG	2 cut(s)	116, 752
CfoI	GCGC	1 cut(s)	1009
Cfr10I	RCCGGY	2 cut(s)	475, 713
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	783
Csp6I	GTAC	3 cut(s)	329, 662, 1084
CviAII	CATG	6 cut(s)	533, 586, 687, 818, 865, 976
CviQI	GTAC	3 cut(s)	329, 662, 1084
DdeI	CTNAG	4 cut(s)	48, 180, 489, 885
DpnI	GATC	4 cut(s)	372, 569, 782, 903
DpnII	GATC	4 cut(s)	370, 567, 780, 901
Eco31I	GGTCTC	1 cut(s)	1057
Eco47I	GGWCC	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	578
EcoT22I	ATGCAT	2 cut(s)	604, 1004
Esp3I	CGTCTC	2 cut(s)	44, 164
FaeI	CATG	6 cut(s)	536, 589, 690, 821, 868, 979
FalI	AAGNNNNNCTT	4 cut(s)	477, 509, 503, 535
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	6 cut(s)	532, 585, 686, 817, 864, 975
Fnu4HI	GCNGC	5 cut(s)	114, 252, 473, 918, 1010
FokI	GGATG	2 cut(s)	707, 940
Fsp4HI	GCNGC	5 cut(s)	114, 252, 473, 918, 1010
FspBI	CTAG	2 cut(s)	189, 935
GlaI	GCGC	1 cut(s)	1008
GluI	GCNGC	5 cut(s)	114, 252, 473, 918, 1010
GsaI	CCCAGC	1 cut(s)	1016
HapII	CCGG	6 cut(s)	100, 476, 500, 572, 714, 777
HhaI	GCGC	1 cut(s)	1009
Hin1II	CATG	6 cut(s)	536, 589, 690, 821, 868, 979
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HincII	GTYRAC	3 cut(s)	217, 558, 1099
HindII	GTYRAC	3 cut(s)	217, 558, 1099
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	6 cut(s)	20, 304, 627, 728, 971, 1109
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	6 cut(s)	100, 476, 500, 572, 714, 777
Hpy166II	GTNNAC	3 cut(s)	217, 558, 1099
Hpy188I	TCNGA	5 cut(s)	49, 60, 181, 733, 847
Hpy188III	TCNNGA	4 cut(s)	297, 374, 905, 982
Hpy8I	GTNNAC	3 cut(s)	217, 558, 1099
HpyAV	CCTTC	5 cut(s)	195, 448, 509, 686, 979
HpyCH4III	ACNGT	2 cut(s)	55, 1118
HpyCH4IV	ACGT	1 cut(s)	1092
HpyCH4V	TGCA	6 cut(s)	147, 251, 585, 602, 864, 1002
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 1018
HpyF3I	CTNAG	4 cut(s)	48, 180, 489, 885
HpySE526I	ACGT	1 cut(s)	1092
Hsp92II	CATG	6 cut(s)	536, 589, 690, 821, 868, 979
HspAI	GCGC	1 cut(s)	1007
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	370, 567, 780, 901
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	4 cut(s)	100, 263, 459, 929
LweI	GCATC	3 cut(s)	325, 611, 918
MaeI	CTAG	2 cut(s)	189, 935
MaeII	ACGT	1 cut(s)	1092
MaeIII	GTNAC	3 cut(s)	829, 867, 1022
MalI	GATC	4 cut(s)	372, 569, 782, 903
MboI	GATC	4 cut(s)	370, 567, 780, 901
MboII	GAAGA	7 cut(s)	78, 81, 168, 847, 980, 1029, 1068
MflI	RGATCY	1 cut(s)	567
MluCI	AATT	7 cut(s)	122, 276, 459, 704, 909, 941, 1058
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	5 cut(s)	416, 601, 707, 711, 825
MnlI	CCTC	8 cut(s)	433, 439, 536, 568, 617, 643, 727, 763
Mph1103I	ATGCAT	2 cut(s)	604, 1004
MseI	TTAA	5 cut(s)	120, 216, 279, 510, 765
MslI	CAYNNNNRTG	2 cut(s)	136, 863
MspA1I	CMGCKG	2 cut(s)	113, 254
MspI	CCGG	6 cut(s)	100, 476, 500, 572, 714, 777
MspR9I	CCNGG	3 cut(s)	100, 572, 778
MvnI	CGCG	1 cut(s)	1009
MwoI	GCNNNNNNNGC	2 cut(s)	472, 1018
NciI	CCSGG	3 cut(s)	100, 572, 778
NdeII	GATC	4 cut(s)	370, 567, 780, 901
NlaIII	CATG	6 cut(s)	536, 589, 690, 821, 868, 979
NlaIV	GGNNCC	2 cut(s)	569, 579
NsiI	ATGCAT	2 cut(s)	604, 1004
NspI	RCATGY	4 cut(s)	589, 690, 821, 868
OliI	CACNNNNGTG	1 cut(s)	136
PaeI	GCATGC	2 cut(s)	589, 821
PfeI	GAWTC	5 cut(s)	20, 304, 627, 971, 1109
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	5 cut(s)	115, 253, 474, 919, 1011
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	1092
Psp5II	RGGWCCY	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	1012
PspN4I	GGNNCC	2 cut(s)	569, 579
PspPI	GGNCC	1 cut(s)	578
PspPPI	RGGWCCY	1 cut(s)	578
PstNI	CAGNNNCTG	2 cut(s)	116, 752
PsuI	RGATCY	1 cut(s)	567
PvuII	CAGCTG	2 cut(s)	113, 254
RsaI	GTAC	3 cut(s)	330, 663, 1085
RsaNI	GTAC	3 cut(s)	329, 662, 1084
RseI	CAYNNNNRTG	2 cut(s)	136, 863
SaqAI	TTAA	5 cut(s)	120, 216, 279, 510, 765
SatI	GCNGC	5 cut(s)	114, 252, 473, 918, 1010
Sau3AI	GATC	4 cut(s)	370, 567, 780, 901
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	3 cut(s)	100, 572, 778
SfaNI	GCATC	3 cut(s)	325, 611, 918
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	2 cut(s)	136, 863
SmlI	CTYRAG	2 cut(s)	295, 725
SmoI	CTYRAG	2 cut(s)	295, 725
SphI	GCATGC	2 cut(s)	589, 821
Sse9I	AATT	7 cut(s)	122, 276, 459, 704, 909, 941, 1058
SsiI	CCGC	3 cut(s)	875, 1009, 1029
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	2 cut(s)	189, 935
StyD4I	CCNGG	3 cut(s)	98, 570, 776
TaaI	ACNGT	2 cut(s)	55, 1118
TaiI	ACGT	1 cut(s)	1095
TaqI	TCGA	4 cut(s)	23, 92, 783, 948
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	7 cut(s)	122, 276, 459, 704, 909, 941, 1058
TatI	WGTACW	1 cut(s)	1083
TauI	GCSGC	1 cut(s)	1012
TfiI	GAWTC	5 cut(s)	20, 304, 627, 971, 1109
Tru1I	TTAA	5 cut(s)	120, 216, 279, 510, 765
Tru9I	TTAA	5 cut(s)	120, 216, 279, 510, 765
TscAI	CASTG	1 cut(s)	963
TseI	GCWGC	4 cut(s)	113, 251, 472, 917
TspDTI	ATGAA	3 cut(s)	709, 847, 954
TspRI	CASTG	1 cut(s)	963
VpaK11BI	GGWCC	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	5 cut(s)	122, 459, 909, 941, 1058
XceI	RCATGY	4 cut(s)	589, 690, 821, 868
XspI	CTAG	2 cut(s)	189, 935
Zsp2I	ATGCAT	2 cut(s)	604, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.