Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Reverse (-)

11611960 .. 11617451

Gene Structure 5492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTCTGTAATGGAGATGAGCTTGTTTCAACCGAAGTCTATGTCTGCTTCTGAGATGGCTCAGGTGGGGAGGATGTACTCGAATTCGTTTTCAAGTTTCAGGTACTTACCGGCTGGTGTCAAAGTATCTCCACAGTTCTGTTCTTGCATAGGGAATCCTCTGAAGGCTTCTTCCTTTTCTCATCCTTCTAGTTCAAACAATAGATATCTCTCAACAAACGCCATTGGTAGTGTCGGAGGGGATAAACTTGCAGCTGAAACTTCCTTATTTCAAATATTTGGAACAAATGGTGCAAGATCAAATTTGTTTCCTAGAGACATTAGAGTACTCGATGCCTTTGATGATGAGTATGGGGGAGTTATCGTTGATCCAGAACGATTACCAGAAAATTCAGATGCCTTTGCTTACATCCTCAACTCCTCCCTTTCTCATTGGAAAGTGAATGGAAAGAAGGGAATTTGGCTTAAGCTGCCAGTAGAACGCGCTGAACTTGTTCCAGTTGCAATTAAGGAAGGTTTCCAGTACCACCATGCAGAACGAGGATATGTGATGTTGACATACTGGATTCCAGAAGGACCTTGCATGCTTCCGGCTAATGCTTCACATCAAGTAGGGGTTGGGGGATTTGTCATCAATGACAATAATGAGGTTCTTGTCGTACAAGAGAAACATTGTTCTCCTTCCTGTGTTGGTTTCTGGAAGATACCAACTGGCTTCATCCTTGAGTCAGAGGAGATTTTCACAGGAGCTGTGAGAGAAGTTAAGGAGGAAACTGGGATTGACACGGAGTTTGTGGAAGTTATAGCATTCAGGCATGCTCACAATGTAGCTTTTGAAAAGTCTGATTTGTTCTTTATCTGCATGCTGAAACCACTATCCTCTCAGATTATAGTTGATGATCTTGAAATTGAAGCAGCCAAGTGGATGCCCCTGGCTGAGTTTGTGGAACAACCACTAGTAAAAGAAGATTGCATGTTCAAGAGAGTGATTTCTATATGCATTGCGCGGCTAGGAAAACGTTACTGCGGTTTATCTTCTCATCAAGTGGTCTCCAAGTTTGATGGCAGGTTGTCATCCTTGTACTATAACGTCGTCGATACACAAGATTTCAACTGTTCAGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

376

Amino Acids

41.77

Weight (kDa)

5.45

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	111 - 189	6.8e-31	Nudix hydrolase domain
NUDIX	PF00293	202 - 307	5.1e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1056
AccII	CGCG	2 cut(s)	483, 1006
AciI	CCGC	2 cut(s)	1006, 1026
AclI	AACGTT	1 cut(s)	1018
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	4 cut(s)	82, 301, 388, 456
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	6 cut(s)	77, 104, 327, 524, 660, 1082
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	9 cut(s)	29, 93, 195, 272, 836, 905, 911, 979, 1111
AhlI	ACTAGT	1 cut(s)	955
AjnI	CCWGG	1 cut(s)	930
AluBI	AGCT	5 cut(s)	21, 254, 469, 749, 830
AluI	AGCT	5 cut(s)	21, 254, 469, 749, 830
Alw26I	GTCTC	2 cut(s)	309, 1054
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	749
ApeKI	GCWGC	3 cut(s)	251, 469, 914
ApoI	RAATTY	4 cut(s)	82, 301, 388, 456
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 773, 805
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	485, 1006
AspS9I	GGNCC	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	263, 456, 926
BccI	CCATC	2 cut(s)	49, 1055
BciT130I	CCWGG	1 cut(s)	932
BcoDI	GTCTC	2 cut(s)	309, 1054
BcuI	ACTAGT	1 cut(s)	955
BfaI	CTAG	4 cut(s)	189, 312, 956, 1010
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	1056
BisI	GCNGC	4 cut(s)	252, 470, 915, 1007
BlsI	GCNGC	4 cut(s)	253, 471, 916, 1008
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	932
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	932
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	3 cut(s)	322, 385, 915
BmuI	ACTGGG	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	743
BsaI	GGTCTC	1 cut(s)	1054
BsaJI	CCNNGG	1 cut(s)	930
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	6 cut(s)	473, 497, 520, 566, 715, 778
Bse3DI	GCAATG	1 cut(s)	999
BseBI	CCWGG	1 cut(s)	932
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	6 cut(s)	78, 181, 408, 717, 930, 1073
BseMI	GCAATG	1 cut(s)	999
BseMII	CTCAG	4 cut(s)	42, 74, 896, 927
BseNI	ACTGG	6 cut(s)	473, 497, 520, 566, 715, 778
BseRI	GAGGAG	2 cut(s)	409, 746
BseXI	GCAGC	3 cut(s)	263, 456, 926
Bsh1236I	CGCG	2 cut(s)	483, 1006
BsiSI	CCGG	2 cut(s)	110, 590
BsmAI	GTCTC	2 cut(s)	309, 1054
BsmI	GAATGC	1 cut(s)	806
Bso31I	GGTCTC	1 cut(s)	1054
Bsp143I	GATC	3 cut(s)	296, 367, 898
BspACI	CCGC	2 cut(s)	1006, 1026
BspCNI	CTCAG	4 cut(s)	43, 73, 895, 928
BspFNI	CGCG	2 cut(s)	483, 1006
BspMI	ACCTGC	1 cut(s)	1056
BspPI	GGATC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	1054
BsrDI	GCAATG	1 cut(s)	999
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	6 cut(s)	473, 497, 520, 566, 715, 778
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	3 cut(s)	296, 367, 898
Bst2UI	CCWGG	1 cut(s)	932
Bst4CI	ACNGT	2 cut(s)	135, 1115
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	584, 816, 863
BstDEI	CTNAG	4 cut(s)	51, 60, 882, 936
BstF5I	GGATG	6 cut(s)	78, 181, 408, 717, 930, 1073
BstFNI	CGCG	2 cut(s)	483, 1006
BstHHI	GCGC	2 cut(s)	485, 1006
BstKTI	GATC	3 cut(s)	299, 370, 901
BstMAI	GTCTC	2 cut(s)	309, 1054
BstMBI	GATC	3 cut(s)	296, 367, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	932
BstNSI	RCATGY	4 cut(s)	586, 818, 865, 976
BstSCI	CCNGG	1 cut(s)	930
BstUI	CGCG	2 cut(s)	483, 1006
BstV1I	GCAGC	3 cut(s)	263, 456, 926
BtsCI	GGATG	6 cut(s)	78, 181, 408, 717, 930, 1073
BveI	ACCTGC	1 cut(s)	1056
Cac8I	GCNNGC	3 cut(s)	584, 816, 863
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	2 cut(s)	485, 1006
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	6 cut(s)	76, 103, 326, 523, 659, 1081
CviAII	CATG	5 cut(s)	530, 583, 815, 862, 973
CviQI	GTAC	6 cut(s)	76, 103, 326, 523, 659, 1081
DdeI	CTNAG	4 cut(s)	51, 60, 882, 936
DpnI	GATC	3 cut(s)	298, 369, 900
DpnII	GATC	3 cut(s)	296, 367, 898
Eco31I	GGTCTC	1 cut(s)	1054
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	930
EcoRV	GATATC	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	1001
FaeI	CATG	5 cut(s)	533, 586, 818, 865, 976
FatI	CATG	5 cut(s)	529, 582, 814, 861, 972
Fnu4HI	GCNGC	4 cut(s)	252, 470, 915, 1007
FokI	GGATG	6 cut(s)	85, 168, 395, 704, 937, 1060
Fsp4HI	GCNGC	4 cut(s)	252, 470, 915, 1007
FspBI	CTAG	4 cut(s)	189, 312, 956, 1010
GlaI	GCGC	2 cut(s)	484, 1005
GluI	GCNGC	4 cut(s)	252, 470, 915, 1007
HapII	CCGG	2 cut(s)	110, 590
HhaI	GCGC	2 cut(s)	485, 1006
Hin1II	CATG	5 cut(s)	533, 586, 818, 865, 976
Hin6I	GCGC	2 cut(s)	483, 1004
HinP1I	GCGC	2 cut(s)	483, 1004
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HinfI	GANTC	3 cut(s)	154, 565, 725
HpaII	CCGG	2 cut(s)	110, 590
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	8 cut(s)	52, 162, 236, 394, 730, 844, 885, 1120
Hpy188III	TCNNGA	5 cut(s)	371, 569, 697, 902, 979
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	2 cut(s)	1094, 1097
HpyAV	CCTTC	6 cut(s)	157, 195, 445, 506, 566, 690
HpyCH4III	ACNGT	2 cut(s)	135, 1115
HpyCH4IV	ACGT	2 cut(s)	1018, 1089
HpyCH4V	TGCA	9 cut(s)	147, 251, 293, 503, 533, 582, 861, 972, 999
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	4 cut(s)	51, 60, 882, 936
HpySE526I	ACGT	2 cut(s)	1018, 1089
Hsp92II	CATG	5 cut(s)	533, 586, 818, 865, 976
HspAI	GCGC	2 cut(s)	483, 1004
Kzo9I	GATC	3 cut(s)	296, 367, 898
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	3 cut(s)	263, 456, 926
LweI	GCATC	3 cut(s)	322, 385, 915
MaeI	CTAG	4 cut(s)	189, 312, 956, 1010
MaeII	ACGT	2 cut(s)	1018, 1089
MaeIII	GTNAC	1 cut(s)	1019
MalI	GATC	3 cut(s)	298, 369, 900
MboI	GATC	3 cut(s)	296, 367, 898
MboII	GAAGA	4 cut(s)	162, 712, 977, 1026
MluCI	AATT	6 cut(s)	82, 301, 388, 456, 504, 906
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	1 cut(s)	214
Mph1103I	ATGCAT	1 cut(s)	1001
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	3 cut(s)	465, 507, 762
MspA1I	CMGCKG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	2 cut(s)	110, 590
MspR9I	CCNGG	1 cut(s)	932
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	932
MvnI	CGCG	2 cut(s)	483, 1006
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	3 cut(s)	296, 367, 898
NlaIII	CATG	5 cut(s)	533, 586, 818, 865, 976
NsiI	ATGCAT	1 cut(s)	1001
NspI	RCATGY	4 cut(s)	586, 818, 865, 976
PaeI	GCATGC	3 cut(s)	586, 818, 865
PctI	GAATGC	1 cut(s)	806
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	154, 565
PkrI	GCNGC	4 cut(s)	253, 471, 916, 1008
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PpuMI	RGGWCCY	1 cut(s)	575
Psp1406I	AACGTT	1 cut(s)	1018
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	930
PspGI	CCWGG	1 cut(s)	930
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	749
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	6 cut(s)	77, 104, 327, 524, 660, 1082
RsaNI	GTAC	6 cut(s)	76, 103, 326, 523, 659, 1081
SaqAI	TTAA	3 cut(s)	465, 507, 762
SatI	GCNGC	4 cut(s)	252, 470, 915, 1007
Sau3AI	GATC	3 cut(s)	296, 367, 898
Sau96I	GGNCC	1 cut(s)	575
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	1 cut(s)	932
SfaNI	GCATC	3 cut(s)	322, 385, 915
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	464, 722
SmoI	CTYRAG	2 cut(s)	464, 722
SpeI	ACTAGT	1 cut(s)	955
SphI	GCATGC	3 cut(s)	586, 818, 865
Sse9I	AATT	6 cut(s)	82, 301, 388, 456, 504, 906
SsiI	CCGC	2 cut(s)	1006, 1026
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	4 cut(s)	189, 312, 956, 1010
StyD4I	CCNGG	1 cut(s)	930
TaaI	ACNGT	2 cut(s)	135, 1115
TaiI	ACGT	2 cut(s)	1021, 1092
TaqI	TCGA	3 cut(s)	80, 330, 1095
TasI	AATT	6 cut(s)	82, 301, 388, 456, 504, 906
TatI	WGTACW	3 cut(s)	75, 325, 1080
TauI	GCSGC	1 cut(s)	1009
TfiI	GAWTC	2 cut(s)	154, 565
Tru1I	TTAA	3 cut(s)	465, 507, 762
Tru9I	TTAA	3 cut(s)	465, 507, 762
TseI	GCWGC	3 cut(s)	251, 469, 914
TspDTI	ATGAA	1 cut(s)	706
TspGWI	ACGGA	1 cut(s)	800
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	4 cut(s)	82, 301, 388, 456
XceI	RCATGY	4 cut(s)	586, 818, 865, 976
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	4 cut(s)	189, 312, 956, 1010
ZrmI	AGTACT	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.