Rmu_sc0014894.1_g000001

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014894.1
OG0004136
Physical Location & Seq
Forward (+)
1 .. 1208
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014894.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
gggaagaagggaatttggcttaagctgccggtagaacgagctgagcttgttccagttgctgttaaggaaggtttccaatatcaccatgcagaacgaggatatgtgatgctgacatattggattccagaaggaccatgcatgcttcccgctaatgcttcacatcaagtaggggttgggggatttgtcatcaatgacaataatgaggttcttgtcgtacaagagaaacactgtgctcctacatgcgttggtttctggaaaataccaactggcttcatccttgagtcggaagagattttcacaggagctgtgagagaagttaaggaggaaactggagtaagaatgtgtatttatttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

5.79

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 12
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 283
AflII CTTAAG 1 cut(s) 20
AluBI AGCT 4 cut(s) 25, 41, 46, 305
AluI AGCT 4 cut(s) 25, 41, 46, 305
Alw21I GWGCWC 1 cut(s) 235
AlwNI CAGNNNCTG 2 cut(s) 59, 305
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 53, 271, 334
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 3 cut(s) 53, 271, 334
BseXI GCAGC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 34
BspTI CTTAAG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 3 cut(s) 53, 271, 334
BssAI RCCGGY 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 142, 243
BstV1I GCAGC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 140
CaiI CAGNNNCTG 2 cut(s) 59, 305
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 215
CviAII CATG 4 cut(s) 86, 135, 139, 240
CviJI RGCY 6 cut(s) 19, 25, 41, 46, 270, 305
CviKI_1 RGCY 6 cut(s) 19, 25, 41, 46, 270, 305
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 140
FaeI CATG 4 cut(s) 89, 138, 142, 243
FaiI YATR 6 cut(s) 87, 102, 115, 136, 140, 241
FatI CATG 4 cut(s) 85, 134, 138, 239
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 351
HapII CCGG 1 cut(s) 29
Hin1II CATG 4 cut(s) 89, 138, 142, 243
HinfI GANTC 2 cut(s) 121, 281
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 125, 253
HpyAV CCTTC 2 cut(s) 62, 122
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 89, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 4 cut(s) 89, 138, 142, 243
LmnI GCTCC 2 cut(s) 238, 302
LpnPI CCDG 7 cut(s) 42, 66, 138, 238, 252, 285, 315
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 1 cut(s) 96
MboII GAAGA 2 cut(s) 16, 299
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 12
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 3 cut(s) 89, 196, 316
Mph1103I ATGCAT 1 cut(s) 140
MseI TTAA 3 cut(s) 21, 63, 318
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 89, 138, 142, 243
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 2 cut(s) 142, 243
PaeI GCATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 131
PstNI CAGNNNCTG 2 cut(s) 59, 305
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 3 cut(s) 21, 63, 318
SatI GCNGC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 235
SetI ASST 6 cut(s) 27, 43, 48, 73, 207, 307
SfaNI GCATC 1 cut(s) 96
SinI GGWCC 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 20, 278
SmoI CTYRAG 2 cut(s) 20, 278
SphI GCATGC 1 cut(s) 142
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 147
TaaI ACNGT 1 cut(s) 230
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 21, 63, 318
Tru9I TTAA 3 cut(s) 21, 63, 318
TscAI CASTG 1 cut(s) 233
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 262
TspRI CASTG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 142, 243
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.