Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

48628485 .. 48631513

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGATGAGCTTGTTTCAATCGAAATCTCTGTCTGCTTCTGAAATGGCTCAGGTGGGGAGGATGTACTCAAATTCGTTTACGAGTTTCAGGTACTTGACGGCTGGTGTCAAAGTATCTCCACAGTTCTGTTCTTGCGCAGGGAATTCTCTGAAGGCTTCTTCCTTTTCTCATCCATCTAGTTCAAACAATAGATATCTGTCAACAAACGCCATTGGTAGTGTTGGAGGGGATAAACTTGCAGCTGAAACTTCCTTATTTCAAATCTTTGGAACAAATGGTGCAAGGTCAACTCTGTTTCCTAGAGACATTAGAGTACTTGATGCCTTTGATGATGAGTATGGGGGAGTTATCGTTGATCCAGAACGACTACCAGAAAATGCAGATACCTTTGCTTACATCCTCCACTCCTCGCTTTCTAATTGGAAAATGGAGGGAAAGAAGGGAATTTGGCTTAAGCTGCCGGTAGAACGAGCTGAGCTTGTTCCAGTTGCTGTTAAGGAAGGTTTCCAATATCACCATGCAGAACGAGGATATGTGATGCTGACATATTGGATTCCAGAAGGACCATGCATGCTTCCCGCTAATGCTTCACATCAAGTAGGGGTTGGGGGATTTGTCATCAATGACAATAATGAGGTTCTTGTCGTACAAGAGAAACACTGTGCTCCTACATGCGTTGGTTTCTGGAAAATACCAACTGGCTTCATCCTTGAGTCAGAAGAGATTTTCACAGGAGCTGTGCGAGAAGTTAAGGAGGAAACTGGAATTGATACGGAGTTTGTGGAAGTTATAGCATTCAGGCATGCTCACAATGTTGCTTTCGAAAAGTCAGATTTGTTCTTTATCTGCATGCTAAAACCACTATCGACTCATATTATAGTTGATGATCTTGAAATTGAAGCAGCCAAGTGGATGGCCCTGGCTGAGTTTGTGGAGCAACCACTAGTAAAAGAAGATTCCATGTTCAAGAAGGTCATTTCTATATGCATTGCCCGGCTAGGAAAGCGTTACTGCGGTTTATCTTCTCATCAAGTGGTCTCCAAGTTCGATGGCAGGTTGTCTTCCTTGTACTATAACGTCGTTGATACACAAGACTTCAACTGTTCAAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

373

Amino Acids

41.38

Weight (kDa)

5.53

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	108 - 186	1.1e-30	Nudix hydrolase domain
NUDIX	PF00293	199 - 319	1.1e-18	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	1047
AciI	CCGC	2 cut(s)	582, 1017
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	73, 145, 447
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	5 cut(s)	68, 95, 318, 651, 1073
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	8 cut(s)	20, 186, 263, 896, 902, 970, 1102, 1110
AhlI	ACTAGT	1 cut(s)	946
AjnI	CCWGG	1 cut(s)	921
AluBI	AGCT	6 cut(s)	12, 245, 460, 476, 481, 740
AluI	AGCT	6 cut(s)	12, 245, 460, 476, 481, 740
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	300, 1045
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	2 cut(s)	494, 740
AoxI	GGCC	1 cut(s)	918
ApeKI	GCWGC	3 cut(s)	242, 460, 905
ApoI	RAATTY	3 cut(s)	73, 145, 447
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	566, 919
AsuC2I	CCSGG	1 cut(s)	997
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	825
AvaII	GGWCC	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	254, 447, 917
BccI	CCATC	3 cut(s)	184, 910, 1046
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	923
BcnI	CCSGG	1 cut(s)	997
BcoDI	GTCTC	2 cut(s)	300, 1045
BcuI	ACTAGT	1 cut(s)	946
BfaI	CTAG	4 cut(s)	180, 303, 947, 1001
BfrI	CTTAAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	1047
BisI	GCNGC	3 cut(s)	243, 461, 906
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	3 cut(s)	244, 462, 907
BmcAI	AGTACT	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	923, 997
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	566, 919
BmrFI	CCNGG	2 cut(s)	923, 997
BmsI	GCATC	2 cut(s)	313, 531
BpiI	GAAGAC	1 cut(s)	1056
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	997
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	1 cut(s)	921
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	488, 706, 769
Bse3DI	GCAATG	1 cut(s)	990
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	1 cut(s)	921
BseGI	GGATG	5 cut(s)	69, 172, 399, 708, 921
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	3 cut(s)	65, 468, 918
BseNI	ACTGG	3 cut(s)	488, 706, 769
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	254, 447, 917
BshFI	GGCC	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	464, 997
BsmAI	GTCTC	2 cut(s)	300, 1045
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	920
Bso31I	GGTCTC	1 cut(s)	1045
Bsp119I	TTCGAA	1 cut(s)	825
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	358, 889
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	582, 1017
BspANI	GGCC	1 cut(s)	920
BspCNI	CTCAG	3 cut(s)	64, 469, 919
BspMI	ACCTGC	1 cut(s)	1047
BspPI	GGATC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	825
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	1045
BsrDI	GCAATG	1 cut(s)	990
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	488, 706, 769
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	921
BssMI	GATC	2 cut(s)	358, 889
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	3 cut(s)	126, 665, 1106
Bst6I	CTCTTC	1 cut(s)	717
BstAFI	CTTAAG	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	825
BstC8I	GCNNGC	3 cut(s)	575, 807, 854
BstDEI	CTNAG	3 cut(s)	51, 477, 927
BstF5I	GGATG	5 cut(s)	69, 172, 399, 708, 921
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	361, 892
BstMAI	GTCTC	2 cut(s)	300, 1045
BstMBI	GATC	2 cut(s)	358, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 1006
BstNI	CCWGG	1 cut(s)	923
BstNSI	RCATGY	4 cut(s)	577, 678, 809, 856
BstSCI	CCNGG	2 cut(s)	921, 995
BstV1I	GCAGC	3 cut(s)	254, 447, 917
BstV2I	GAAGAC	1 cut(s)	1056
BstXI	CCANNNNNNTGG	1 cut(s)	916
BsuRI	GGCC	1 cut(s)	920
BtsCI	GGATG	5 cut(s)	69, 172, 399, 708, 921
BtsIMutI	CAGTG	1 cut(s)	661
BveI	ACCTGC	1 cut(s)	1047
Cac8I	GCNNGC	3 cut(s)	575, 807, 854
CaiI	CAGNNNCTG	2 cut(s)	494, 740
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	566, 919
Csp6I	GTAC	5 cut(s)	67, 94, 317, 650, 1072
CviAII	CATG	7 cut(s)	521, 570, 574, 675, 806, 853, 964
CviQI	GTAC	5 cut(s)	67, 94, 317, 650, 1072
DdeI	CTNAG	3 cut(s)	51, 477, 927
DpnI	GATC	2 cut(s)	360, 891
DpnII	GATC	2 cut(s)	358, 889
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	1045
Eco32I	GATATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	921
EcoRV	GATATC	1 cut(s)	197
EcoT22I	ATGCAT	2 cut(s)	575, 992
FaeI	CATG	7 cut(s)	524, 573, 577, 678, 809, 856, 967
FatI	CATG	7 cut(s)	520, 569, 573, 674, 805, 852, 963
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	243, 461, 906
FokI	GGATG	5 cut(s)	76, 159, 386, 695, 928
Fsp4HI	GCNGC	3 cut(s)	243, 461, 906
FspBI	CTAG	4 cut(s)	180, 303, 947, 1001
FspI	TGCGCA	1 cut(s)	139
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	243, 461, 906
HaeIII	GGCC	1 cut(s)	920
HapII	CCGG	2 cut(s)	464, 997
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	7 cut(s)	524, 573, 577, 678, 809, 856, 967
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	2 cut(s)	204, 291
HindII	GTYRAC	2 cut(s)	204, 291
HinfI	GANTC	4 cut(s)	556, 716, 871, 959
HpaII	CCGG	2 cut(s)	464, 997
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	3 cut(s)	81, 204, 291
Hpy188I	TCNGA	4 cut(s)	43, 153, 721, 835
Hpy188III	TCNNGA	5 cut(s)	362, 560, 688, 893, 970
Hpy8I	GTNNAC	3 cut(s)	81, 204, 291
Hpy99I	CGWCG	1 cut(s)	1085
HpyAV	CCTTC	5 cut(s)	148, 436, 497, 557, 967
HpyCH4III	ACNGT	3 cut(s)	126, 665, 1106
HpyCH4IV	ACGT	1 cut(s)	1080
HpyCH4V	TGCA	7 cut(s)	242, 284, 383, 524, 573, 852, 990
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 1006
HpyF3I	CTNAG	3 cut(s)	51, 477, 927
HpySE526I	ACGT	1 cut(s)	1080
Hsp92II	CATG	7 cut(s)	524, 573, 577, 678, 809, 856, 967
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	358, 889
LmnI	GCTCC	3 cut(s)	673, 737, 937
Lsp1109I	GCAGC	3 cut(s)	254, 447, 917
LweI	GCATC	2 cut(s)	313, 531
MaeI	CTAG	4 cut(s)	180, 303, 947, 1001
MaeII	ACGT	1 cut(s)	1080
MaeIII	GTNAC	1 cut(s)	1010
MalI	GATC	2 cut(s)	360, 891
MboI	GATC	2 cut(s)	358, 889
MboII	GAAGA	5 cut(s)	153, 734, 968, 1017, 1056
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	7 cut(s)	73, 145, 421, 447, 768, 897, 1111
MlyI	GAGTC	2 cut(s)	725, 865
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	54, 221, 413, 421, 427, 524, 631, 751
Mph1103I	ATGCAT	2 cut(s)	575, 992
MseI	TTAA	3 cut(s)	456, 498, 753
MspA1I	CMGCKG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	2 cut(s)	464, 997
MspR9I	CCNGG	2 cut(s)	923, 997
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	2 cut(s)	460, 1006
NciI	CCSGG	1 cut(s)	997
NdeII	GATC	2 cut(s)	358, 889
NlaIII	CATG	7 cut(s)	524, 573, 577, 678, 809, 856, 967
NsbI	TGCGCA	1 cut(s)	139
NsiI	ATGCAT	2 cut(s)	575, 992
NspI	RCATGY	4 cut(s)	577, 678, 809, 856
NspV	TTCGAA	1 cut(s)	825
PaeI	GCATGC	3 cut(s)	577, 809, 856
PctI	GAATGC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	556, 959
PkrI	GCNGC	3 cut(s)	244, 462, 907
PleI	GAGTC	2 cut(s)	724, 865
PpsI	GAGTC	2 cut(s)	724, 865
Psp6I	CCWGG	1 cut(s)	921
PspGI	CCWGG	1 cut(s)	921
PspPI	GGNCC	2 cut(s)	566, 919
PstNI	CAGNNNCTG	2 cut(s)	494, 740
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	68, 95, 318, 651, 1073
RsaNI	GTAC	5 cut(s)	67, 94, 317, 650, 1072
SaqAI	TTAA	3 cut(s)	456, 498, 753
SatI	GCNGC	3 cut(s)	243, 461, 906
Sau3AI	GATC	2 cut(s)	358, 889
Sau96I	GGNCC	2 cut(s)	566, 919
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	2 cut(s)	725, 865
ScrFI	CCNGG	2 cut(s)	923, 997
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	313, 531
SfuI	TTCGAA	1 cut(s)	825
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	455, 713
SmoI	CTYRAG	2 cut(s)	455, 713
SpeI	ACTAGT	1 cut(s)	946
SphI	GCATGC	3 cut(s)	577, 809, 856
Sse9I	AATT	7 cut(s)	73, 145, 421, 447, 768, 897, 1111
SsiI	CCGC	2 cut(s)	582, 1017
SspMI	CTAG	4 cut(s)	180, 303, 947, 1001
StyD4I	CCNGG	2 cut(s)	921, 995
TaaI	ACNGT	3 cut(s)	126, 665, 1106
TaiI	ACGT	1 cut(s)	1083
TaqI	TCGA	4 cut(s)	23, 825, 869, 1050
TasI	AATT	7 cut(s)	73, 145, 421, 447, 768, 897, 1111
TatI	WGTACW	3 cut(s)	66, 316, 1071
TfiI	GAWTC	2 cut(s)	556, 959
Tru1I	TTAA	3 cut(s)	456, 498, 753
Tru9I	TTAA	3 cut(s)	456, 498, 753
TscAI	CASTG	1 cut(s)	668
TseI	GCWGC	3 cut(s)	242, 460, 905
TspDTI	ATGAA	1 cut(s)	697
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	3 cut(s)	73, 145, 447
XceI	RCATGY	4 cut(s)	577, 678, 809, 856
XspI	CTAG	4 cut(s)	180, 303, 947, 1001
ZrmI	AGTACT	1 cut(s)	318
Zsp2I	ATGCAT	2 cut(s)	575, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.