Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

47078364 .. 47082224

Gene Structure 3861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGATGAGCTTGTTTCAATCGAAATCTATGTCTGCTTCTGAAATGGCTCAGGTGGGGAGGATGTACTCAAATTCGTTTACGAGTTTCAGGTACTTACCGGTTGGTATCAAAGTATCTCCACAGTTTTGTTCTTGCGCCTGCACAGGGAATCCTCTGAAGGCTTCTTCCTTTTCTCATCCTTCTAGTTCAAACAATAGATATCTGTCAACAAACGCCATTGGTAGTGTTGGAGGGGATAAAATTGCAGCTGAAACTTCATTATTCCAAATCTTTGGAACAAATGGTGCAAGGTCAAATCTGTTTCCTAGAGACATTAGAGTACTTGATGCCTTTGATGATGAGTATGGGGGAGTTATCGTTGATCCAGAACGACTACCAGAAAATGCAGACGCCTTTGCTTACATCCTCCACTCCTCGCTTTCTAATTGGAAAATGGAGGGAAAGAAGGGAATTTGGCTTAAGCTGCCGGTAGAGCGAGCTGAGCTAGTTCCAGTTGCTGTTAAGGAAGGTTTCCAGTATCACCATGCAGAACGAGGATATGTGATGCTGACATATTGGATTCCAGAAGGACCATGCATGCTTCCCGCTAATGCTTCACATCAAGTAGGGGTTGGGGGATTTGTCATCAATGCCAATAATGAGGTTCTTGTCGTACAAGAGAAACACTGTGCTCCCACATGCGTTGGTTTCTGGAAAATACCAACAGGCTTCATCCTTGAGTCAGAAGAGATTTTCACAGGAGCTGTGAGAGAAGTCAAGGAAGAAACTGGGATTGATACGGAGTTTGTAGAAGTTATAGCGTTCAGGCATGCTCACAACGTTGCTTTTGAAAAGTCAGATTTGTTCTTTATCTGTATGCTAAAACCACTATCGACTCAGATTATAGTTGATGATCTTGAAATTGAAGCAGCCAAGTGGATGCCCCTGGCTGAGTTTGTGGAGCAACCACTAGTAAAAGAAGATTCCATGTTCAAGAAGGTCATTTCTATATGCATTGCCCGGCTAGGAAAGCGTTACTTGCGGCTTATCTTCTCATCAAGTGGTCTCCAAGTTCGATGGCAGGTTGTCTTCCTTGTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

361

Amino Acids

40.28

Weight (kDa)

5.82

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	110 - 188	8.2e-31	Nudix hydrolase domain
NUDIX	PF00293	201 - 321	2.1e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1054
AciI	CCGC	2 cut(s)	588, 1024
AclI	AACGTT	1 cut(s)	822
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	73, 453
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	5 cut(s)	68, 95, 324, 657, 1080
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	461
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	6 cut(s)	20, 192, 833, 902, 908, 976
AhlI	ACTAGT	1 cut(s)	952
AjnI	CCWGG	1 cut(s)	927
AluBI	AGCT	6 cut(s)	12, 251, 466, 482, 487, 746
AluI	AGCT	6 cut(s)	12, 251, 466, 482, 487, 746
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	2 cut(s)	306, 1052
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	2 cut(s)	500, 746
ApeKI	GCWGC	3 cut(s)	248, 466, 911
ApoI	RAATTY	2 cut(s)	73, 453
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AsiGI	ACCGGT	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	1 cut(s)	1003
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	1063
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	260, 453, 923
BccI	CCATC	1 cut(s)	1053
BciT130I	CCWGG	1 cut(s)	929
BcnI	CCSGG	1 cut(s)	1003
BcoDI	GTCTC	2 cut(s)	306, 1052
BcuI	ACTAGT	1 cut(s)	952
BfaI	CTAG	5 cut(s)	186, 309, 488, 953, 1007
BfrI	CTTAAG	1 cut(s)	461
BfuAI	ACCTGC	1 cut(s)	1054
BisI	GCNGC	4 cut(s)	249, 467, 912, 1025
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	4 cut(s)	250, 468, 913, 1026
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	929, 1003
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmrFI	CCNGG	2 cut(s)	929, 1003
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	3 cut(s)	319, 537, 912
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	1063
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	1003
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	1052
BsaJI	CCNNGG	1 cut(s)	927
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	2 cut(s)	100, 469
Bse1I	ACTGG	3 cut(s)	494, 517, 775
Bse3DI	GCAATG	1 cut(s)	996
BseBI	CCWGG	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	927
BseGI	GGATG	5 cut(s)	69, 178, 405, 714, 927
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	996
BseMII	CTCAG	4 cut(s)	65, 474, 893, 924
BseNI	ACTGG	3 cut(s)	494, 517, 775
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	260, 453, 923
BsgI	GTGCAG	1 cut(s)	127
BshTI	ACCGGT	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	676
BsiSI	CCGG	3 cut(s)	101, 470, 1003
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	306, 1052
Bso31I	GGTCTC	1 cut(s)	1052
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	2 cut(s)	364, 895
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	2 cut(s)	588, 1024
BspCNI	CTCAG	4 cut(s)	64, 475, 892, 925
BspMI	ACCTGC	1 cut(s)	1054
BspPI	GGATC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	996
BsrFI	RCCGGY	2 cut(s)	100, 469
BsrI	ACTGG	3 cut(s)	494, 517, 775
BssAI	RCCGGY	2 cut(s)	100, 469
BssECI	CCNNGG	1 cut(s)	927
BssMI	GATC	2 cut(s)	364, 895
BssNI	GRCGYC	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	2 cut(s)	126, 671
Bst6I	CTCTTC	1 cut(s)	723
BstACI	GRCGYC	1 cut(s)	393
BstAFI	CTTAAG	1 cut(s)	461
BstC8I	GCNNGC	4 cut(s)	142, 480, 581, 813
BstDEI	CTNAG	4 cut(s)	51, 483, 879, 933
BstF5I	GGATG	5 cut(s)	69, 178, 405, 714, 927
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	367, 898
BstMAI	GTCTC	2 cut(s)	306, 1052
BstMBI	GATC	2 cut(s)	364, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	466, 475, 484, 1012, 1021
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	3 cut(s)	583, 684, 815
BstSCI	CCNGG	2 cut(s)	927, 1001
BstV1I	GCAGC	3 cut(s)	260, 453, 923
BstV2I	GAAGAC	1 cut(s)	1063
BstXI	CCANNNNNNTGG	1 cut(s)	275
BtsCI	GGATG	5 cut(s)	69, 178, 405, 714, 927
BtsIMutI	CAGTG	1 cut(s)	667
BveI	ACCTGC	1 cut(s)	1054
Cac8I	GCNNGC	4 cut(s)	142, 480, 581, 813
CaiI	CAGNNNCTG	2 cut(s)	500, 746
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	2 cut(s)	100, 469
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	5 cut(s)	67, 94, 323, 656, 1079
CspAI	ACCGGT	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	6 cut(s)	527, 576, 580, 681, 812, 970
CviQI	GTAC	5 cut(s)	67, 94, 323, 656, 1079
DdeI	CTNAG	4 cut(s)	51, 483, 879, 933
DpnI	GATC	2 cut(s)	366, 897
DpnII	GATC	2 cut(s)	364, 895
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	1052
Eco32I	GATATC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	927
EcoRV	GATATC	1 cut(s)	203
EcoT22I	ATGCAT	2 cut(s)	581, 998
FaeI	CATG	6 cut(s)	530, 579, 583, 684, 815, 973
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FatI	CATG	6 cut(s)	526, 575, 579, 680, 811, 969
FauI	CCCGC	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	249, 467, 912, 1025
FokI	GGATG	5 cut(s)	76, 165, 392, 701, 934
Fsp4HI	GCNGC	4 cut(s)	249, 467, 912, 1025
FspBI	CTAG	5 cut(s)	186, 309, 488, 953, 1007
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	249, 467, 912, 1025
HapII	CCGG	3 cut(s)	101, 470, 1003
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	530, 579, 583, 684, 815, 973
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	5 cut(s)	151, 562, 722, 877, 965
HpaII	CCGG	3 cut(s)	101, 470, 1003
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	81, 210
Hpy188I	TCNGA	5 cut(s)	43, 159, 727, 841, 882
Hpy188III	TCNNGA	5 cut(s)	368, 566, 694, 899, 976
Hpy8I	GTNNAC	2 cut(s)	81, 210
HpyAV	CCTTC	6 cut(s)	154, 192, 442, 503, 563, 973
HpyCH4III	ACNGT	2 cut(s)	126, 671
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	7 cut(s)	144, 248, 290, 389, 530, 579, 996
HpyF10VI	GCNNNNNNNGC	5 cut(s)	466, 475, 484, 1012, 1021
HpyF3I	CTNAG	4 cut(s)	51, 483, 879, 933
HpySE526I	ACGT	1 cut(s)	822
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	530, 579, 583, 684, 815, 973
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	364, 895
LmnI	GCTCC	3 cut(s)	679, 743, 943
Lsp1109I	GCAGC	3 cut(s)	260, 453, 923
LweI	GCATC	3 cut(s)	319, 537, 912
MaeI	CTAG	5 cut(s)	186, 309, 488, 953, 1007
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	2 cut(s)	366, 897
MboI	GATC	2 cut(s)	364, 895
MboII	GAAGA	6 cut(s)	159, 740, 776, 974, 1024, 1063
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	5 cut(s)	73, 243, 427, 453, 903
MlyI	GAGTC	2 cut(s)	731, 871
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	8 cut(s)	54, 165, 227, 419, 427, 433, 530, 637
Mph1103I	ATGCAT	2 cut(s)	581, 998
MseI	TTAA	2 cut(s)	462, 504
MspA1I	CMGCKG	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	3 cut(s)	101, 470, 1003
MspR9I	CCNGG	2 cut(s)	929, 1003
MvaI	CCWGG	1 cut(s)	929
MwoI	GCNNNNNNNGC	5 cut(s)	466, 475, 484, 1012, 1021
NciI	CCSGG	1 cut(s)	1003
NdeII	GATC	2 cut(s)	364, 895
NlaIII	CATG	6 cut(s)	530, 579, 583, 684, 815, 973
NsiI	ATGCAT	2 cut(s)	581, 998
NspI	RCATGY	3 cut(s)	583, 684, 815
PaeI	GCATGC	2 cut(s)	583, 815
PfeI	GAWTC	3 cut(s)	151, 562, 965
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	250, 468, 913, 1026
PleI	GAGTC	2 cut(s)	730, 871
PpsI	GAGTC	2 cut(s)	730, 871
Psp1406I	AACGTT	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	927
PspGI	CCWGG	1 cut(s)	927
PspPI	GGNCC	1 cut(s)	572
PstNI	CAGNNNCTG	2 cut(s)	500, 746
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	5 cut(s)	68, 95, 324, 657, 1080
RsaNI	GTAC	5 cut(s)	67, 94, 323, 656, 1079
SaqAI	TTAA	2 cut(s)	462, 504
SatI	GCNGC	4 cut(s)	249, 467, 912, 1025
Sau3AI	GATC	2 cut(s)	364, 895
Sau96I	GGNCC	1 cut(s)	572
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	2 cut(s)	731, 871
ScrFI	CCNGG	2 cut(s)	929, 1003
SduI	GDGCHC	1 cut(s)	676
SfaNI	GCATC	3 cut(s)	319, 537, 912
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	461, 719
SmoI	CTYRAG	2 cut(s)	461, 719
SpeI	ACTAGT	1 cut(s)	952
SphI	GCATGC	2 cut(s)	583, 815
Sse9I	AATT	5 cut(s)	73, 243, 427, 453, 903
SsiI	CCGC	2 cut(s)	588, 1024
SspMI	CTAG	5 cut(s)	186, 309, 488, 953, 1007
StyD4I	CCNGG	2 cut(s)	927, 1001
TaaI	ACNGT	2 cut(s)	126, 671
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	3 cut(s)	23, 875, 1057
TasI	AATT	5 cut(s)	73, 243, 427, 453, 903
TatI	WGTACW	3 cut(s)	66, 322, 1078
TauI	GCSGC	1 cut(s)	1027
TfiI	GAWTC	3 cut(s)	151, 562, 965
Tru1I	TTAA	2 cut(s)	462, 504
Tru9I	TTAA	2 cut(s)	462, 504
TscAI	CASTG	1 cut(s)	674
TseI	GCWGC	3 cut(s)	248, 466, 911
TspDTI	ATGAA	2 cut(s)	249, 703
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	1 cut(s)	674
Vha464I	CTTAAG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	73, 453
XceI	RCATGY	3 cut(s)	583, 684, 815
XspI	CTAG	5 cut(s)	186, 309, 488, 953, 1007
ZrmI	AGTACT	1 cut(s)	324
Zsp2I	ATGCAT	2 cut(s)	581, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.