AT5G50610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005407
Physical Location & Seq
Forward (+)
20593600 .. 20594379
780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50610.1

Sequence Viewer

Length: 558 bp
ATGGATCCCGTAATCGCCATGCAAGAGGCCCAAAGTAACAACGGACCAAGAACCTACAAGAAGCCATTTCTTAATTTTCTTGACCGCCTCTCCTTGTCATTTATCGTAGTTGTTTTCTGCGTTATTGTAGTTTTTAGTCCAATTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCACCATCCCTAGAGTTATTAATTACATCTTAAACCCTAAGGTTTTATTCATTCTCACAAATGTTATCGTGATCATCCTCATCGGAGAATCAAGGATTTCTAGACCAAGATCTTCTCTTCCAGCTAGCGCATTACTGAGAAGCCATTCTTATGGTTTGTGGTCTAATGAAAATGTGAGGGTGGAAATGGGATATCAACGATTTTTGGAAGAGAATATTGATCGACCGAGGCTCGGAGAAGGCAAGATATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTGATCGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGTTACATAGACGCATAGACGAAGGCCACATATCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

185

Amino Acids

21.38

Weight (kDa)

9.74

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 51 - 90 3.9e-06 Domain of unknown function (DUF4408)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 152, 509
AluBI AGCT 2 cut(s) 299, 430
AluI AGCT 2 cut(s) 299, 430
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 27, 541
AseI ATTAAT 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 28, 44
AsuHPI GGTGA 1 cut(s) 169
AsuNHI GCTAGC 1 cut(s) 299
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 213
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 483
BccI CCATC 2 cut(s) 188, 439
BclI TGATCA 1 cut(s) 246
BfaI CTAG 3 cut(s) 186, 276, 300
BglII AGATCT 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 28, 44
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse21I CCTNAGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 2 cut(s) 180, 249
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 2 cut(s) 29, 543
BsiEI CGRYCG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 407
BsnI GGCC 2 cut(s) 29, 543
Bsp143I GATC 6 cut(s) 4, 246, 284, 394, 472, 477
BspACI CCGC 1 cut(s) 85
BspANI GGCC 2 cut(s) 29, 543
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 6 cut(s) 4, 246, 284, 394, 472, 477
BssSI CACGAG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 483
Bst6I CTCTTC 2 cut(s) 297, 378
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 213, 311, 431
BstF5I GGATG 2 cut(s) 180, 249
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 6 cut(s) 7, 249, 287, 397, 475, 480
BstMBI GATC 6 cut(s) 4, 246, 284, 394, 472, 477
BstMCI CGRYCG 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 4, 284
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 2 cut(s) 4, 284
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 29, 543
BtsCI GGATG 2 cut(s) 180, 249
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 28, 44
CseI GACGC 1 cut(s) 537
CviAII CATG 1 cut(s) 19
DdeI CTNAG 3 cut(s) 213, 311, 431
DpnI GATC 6 cut(s) 6, 248, 286, 396, 474, 479
DpnII GATC 6 cut(s) 4, 246, 284, 394, 472, 477
Eam1104I CTCTTC 2 cut(s) 297, 378
EarI CTCTTC 2 cut(s) 297, 378
Eco32I GATATC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 368
FaeI CATG 1 cut(s) 22
FaiI YATR 7 cut(s) 20, 327, 424, 525, 533, 548, 556
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 246
FokI GGATG 2 cut(s) 167, 236
FspBI CTAG 3 cut(s) 186, 276, 300
GlaI GCGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 29, 543
HgaI GACGC 1 cut(s) 537
HhaI GCGC 1 cut(s) 305
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 263, 449
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 260, 410, 477
Hpy188III TCNNGA 3 cut(s) 80, 244, 276
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 407, 533
HpyCH4V TGCA 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 213, 311, 431
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 6 cut(s) 4, 246, 284, 394, 472, 477
LpnPI CCDG 2 cut(s) 309, 473
MaeI CTAG 3 cut(s) 186, 276, 300
MaeIII GTNAC 2 cut(s) 35, 519
MalI GATC 6 cut(s) 6, 248, 286, 396, 474, 479
MboI GATC 6 cut(s) 4, 246, 284, 394, 472, 477
MboII GAAGA 3 cut(s) 279, 284, 395
MflI RGATCY 2 cut(s) 4, 284
MluCI AATT 5 cut(s) 73, 141, 152, 196, 510
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 8 cut(s) 19, 98, 263, 345, 396, 456, 492, 495
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 4 cut(s) 72, 195, 206, 455
MslI CAYNNNNRTG 1 cut(s) 324
NdeII GATC 6 cut(s) 4, 246, 284, 394, 472, 477
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 263, 449
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 28, 44
PsuI RGATCY 2 cut(s) 4, 284
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 4 cut(s) 72, 195, 206, 455
Sau3AI GATC 6 cut(s) 4, 246, 284, 394, 472, 477
Sau96I GGNCC 2 cut(s) 28, 44
SetI ASST 4 cut(s) 56, 219, 301, 432
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 5 cut(s) 73, 141, 152, 196, 510
SsiI CCGC 1 cut(s) 85
SspI AATATT 1 cut(s) 391
SspMI CTAG 3 cut(s) 186, 276, 300
TaqI TCGA 1 cut(s) 397
TaqII GACCGA 1 cut(s) 415
TasI AATT 5 cut(s) 73, 141, 152, 196, 510
TfiI GAWTC 2 cut(s) 263, 449
Tru1I TTAA 4 cut(s) 72, 195, 206, 455
Tru9I TTAA 4 cut(s) 72, 195, 206, 455
TspDTI ATGAA 3 cut(s) 214, 357, 441
TspGWI ACGGA 2 cut(s) 57, 426
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 195
XbaI TCTAGA 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 319
XspI CTAG 3 cut(s) 186, 276, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.