Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

9123875 .. 9125010

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG107400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATCCCATTCCCATCAAGATTCTGAAGTTTCAAGCAATTCACAAGCACAAGAAGCATCAATATCAGCCTTTGAGCAATCACTTCTTTTATTGTTTGGCAGCATTAACTTGCAGTCTTTTTTGTTCTAGCCCTCTGTGGTTTCCTTCATTTTTTTCTTCCATGAAGGGTTTTTTCTTTGGTTTTGTGCCAATGATGAGCTCAATCTTCTTGAGCTCCAAATTTGTGTTCATACTAGGCAACCTCATTGTTGTTGCCCTTGTAGGAGAATCCAAAATCTTTTCCACAGTCTCTTCTCCACCTAATATTCATGTTGAATATGAGGAAAGTATCAAAAGGTGCCAAAGGTTTCAGCCCTCTTCAACCTACAAAGAGAACGAACCTGAAGAGGTGAACTCTCTTGTTGAAGAAAGGGTAATACTGAAGAACTCTCTTATTGAAGAAAGGGTACTGAAGATGAGCTCTTATGGAGATGGAGATGGAGATCAAGCTATAGAAGGAAAAGGGTATAAGGAACAAAGGAAGGAATCAGTAGTGGAGGAGGTGAAAGAGGATATAGATGACGAAGATGAAGAGCTCAGTGTGCCTGAGGACCAGCAATTCAACAAAAGAGCTGATGATTTCATTGCAAGGGTCAATGAAAGAAGGAGATATGAACTGCTACTTTGTAATGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

226

Amino Acids

26.12

Weight (kDa)

5.2

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	4 cut(s)	47, 405, 443, 473
AfaI	GTAC	1 cut(s)	450
AgsI	TTSAA	6 cut(s)	35, 317, 363, 407, 440, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	6 cut(s)	201, 216, 462, 491, 577, 614
AluI	AGCT	6 cut(s)	201, 216, 462, 491, 577, 614
Alw21I	GWGCWC	4 cut(s)	203, 218, 464, 579
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	403, 556
AvaII	GGWCC	1 cut(s)	592
AxyI	CCTNAGG	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	4 cut(s)	203, 218, 464, 579
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
Bbv12I	GWGCWC	4 cut(s)	203, 218, 464, 579
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	3 cut(s)	23, 467, 473
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	129, 236
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	6, 341
BmsI	GCATC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpuEI	CTTGAG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	483
Bse21I	CCTNAGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	483
BseJI	GATNNNNATC	1 cut(s)	483
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	579, 592
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	339
BsiHKAI	GWGCWC	4 cut(s)	203, 218, 464, 579
BsmAI	GTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	4 cut(s)	203, 218, 464, 579
Bsp143I	GATC	2 cut(s)	4, 484
BspCNI	CTCAG	2 cut(s)	580, 591
BspLI	GGNNCC	2 cut(s)	6, 341
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	624
BssMI	GATC	2 cut(s)	4, 484
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	4 cut(s)	298, 364, 381, 567
BstDEI	CTNAG	2 cut(s)	578, 588
BstKTI	GATC	2 cut(s)	7, 487
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	4, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 583
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	2 cut(s)	163, 311
CviJI	RGCY	9 cut(s)	70, 132, 201, 216, 355, 462, 491, 577, 614
CviKI_1	RGCY	9 cut(s)	70, 132, 201, 216, 355, 462, 491, 577, 614
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	578, 588
DpnI	GATC	2 cut(s)	6, 486
DpnII	GATC	2 cut(s)	4, 484
Eam1104I	CTCTTC	4 cut(s)	298, 364, 381, 567
EarI	CTCTTC	4 cut(s)	298, 364, 381, 567
Ecl136II	GAGCTC	4 cut(s)	201, 216, 462, 577
Eco24I	GRGCYC	4 cut(s)	203, 218, 464, 579
Eco47I	GGWCC	1 cut(s)	592
Eco53kI	GAGCTC	4 cut(s)	201, 216, 462, 577
Eco57I	CTGAAG	4 cut(s)	47, 405, 443, 473
Eco81I	CCTNAGG	1 cut(s)	588
EcoICRI	GAGCTC	4 cut(s)	201, 216, 462, 577
EcoT38I	GRGCYC	4 cut(s)	203, 218, 464, 579
FaeI	CATG	2 cut(s)	166, 314
FaiI	YATR	9 cut(s)	164, 233, 312, 321, 468, 494, 510, 557, 654
FatI	CATG	2 cut(s)	162, 310
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	4 cut(s)	203, 218, 464, 579
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	129, 236
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	166, 314
HinfI	GANTC	3 cut(s)	22, 269, 527
HphI	GGTGA	2 cut(s)	403, 556
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	19, 211
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	5 cut(s)	156, 160, 491, 517, 639
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	114, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 583
HpyF3I	CTNAG	2 cut(s)	578, 588
Hsp92II	CATG	2 cut(s)	166, 314
Kzo9I	GATC	2 cut(s)	4, 484
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	3 cut(s)	396, 600, 608
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	129, 236
MalI	GATC	2 cut(s)	6, 486
MboI	GATC	2 cut(s)	4, 484
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	203, 218, 464, 579
MluCI	AATT	3 cut(s)	39, 221, 599
MnlI	CCTC	9 cut(s)	144, 254, 316, 367, 382, 532, 535, 544, 583
MseI	TTAA	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	55, 583
NdeII	GATC	2 cut(s)	4, 484
NlaIII	CATG	2 cut(s)	166, 314
NlaIV	GGNNCC	2 cut(s)	6, 341
PciSI	GCTCTTC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	22, 269, 527
PkrI	GCNGC	1 cut(s)	103
Psp124BI	GAGCTC	4 cut(s)	203, 218, 464, 579
PspN4I	GGNNCC	2 cut(s)	6, 341
PspPI	GGNCC	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SacI	GAGCTC	4 cut(s)	203, 218, 464, 579
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	4, 484
Sau96I	GGNCC	1 cut(s)	592
SduI	GDGCHC	4 cut(s)	203, 218, 464, 579
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	39, 221, 599
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	129, 236
SstI	GAGCTC	4 cut(s)	203, 218, 464, 579
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	3 cut(s)	39, 221, 599
TfiI	GAWTC	3 cut(s)	22, 269, 527
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	8 cut(s)	138, 179, 220, 299, 585, 613, 654, 669
TspRI	CASTG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	2 cut(s)	129, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.