Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Forward (+)

60609012 .. 60610043

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATCCCATTCCCATCAAGATTCTGAAGTTTCGAGCAATTCACAAGCACAAGAAGCATCAATATCAGCCTTTGAGCATTCACTTCTTCTATTGTTTGGCAGCAATAATTTGCAGTCTTTTTTGTTCTAGCCCTTTGTGGTTTCCTTCATTTTTTTCTTCCATGAAGGGTTTTTTCTTTGGTTTTGTGCCAATGATGAGCTCAGTCTTCTTGAGCTCCAAGTTTGCGTTCATACTAGGCAACCTCATTGTTGTTGCCCTTGTAGGAGAATCCAGAATCTTTTCCACAGTCTCTTCTCCACCTAATATTCATGTTGAATATGAGGAAAGTATCAAAAGGTGCCAAAGGTTTCAGCCCTCTTCAACCTACAAAGAGAAGGAACCTGAAGAGGTGAACTCTCTTGTTGAAGAAAGGGTAATACTGAAGAACTCTCTTATTGAAGAAAGGGTACTGAAGATGAGCTCTTATGGAAATGGAGATCAAGCTATAGAAGGAAAAGGGTGTAAGGAACAAAATAAGGAATCAGTAGTGAAGGAGGTAAAAGAGGATATAGATGACGAAGATGAAGAGCTCAGTGTGCCTGAAGACCAGCAATTCAACAAAAGAGCTGATGATTTCATTGCAAGGGTCAATGAAAGAAGGAGATATGAACTGCTACTTTGTAATGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

225

Amino Acids

25.88

Weight (kDa)

5.84

Isoelectric Point (pI)

63.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	5 cut(s)	47, 405, 443, 473, 603
AfaI	GTAC	1 cut(s)	450
AgsI	TTSAA	5 cut(s)	317, 363, 407, 440, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	6 cut(s)	201, 216, 462, 485, 571, 608
AluI	AGCT	6 cut(s)	201, 216, 462, 485, 571, 608
Alw21I	GWGCWC	4 cut(s)	203, 218, 464, 573
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	4 cut(s)	203, 218, 464, 573
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BbsI	GAAGAC	2 cut(s)	199, 591
Bbv12I	GWGCWC	4 cut(s)	203, 218, 464, 573
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	129, 236
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	6, 341, 381
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	2 cut(s)	199, 591
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpuEI	CTTGAG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	618
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	216, 586
BseXI	GCAGC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	339
BsiHKAI	GWGCWC	4 cut(s)	203, 218, 464, 573
BsmAI	GTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	78
Bsp1286I	GDGCHC	4 cut(s)	203, 218, 464, 573
Bsp143I	GATC	2 cut(s)	4, 478
BspCNI	CTCAG	2 cut(s)	215, 585
BspLI	GGNNCC	3 cut(s)	6, 341, 381
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	618
BssMI	GATC	2 cut(s)	4, 478
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	4 cut(s)	298, 364, 381, 561
BstDEI	CTNAG	2 cut(s)	202, 572
BstKTI	GATC	2 cut(s)	7, 481
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	4, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 577
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	2 cut(s)	199, 591
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsIMutI	CAGTG	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	2 cut(s)	163, 311
CviJI	RGCY	9 cut(s)	70, 132, 201, 216, 355, 462, 485, 571, 608
CviKI_1	RGCY	9 cut(s)	70, 132, 201, 216, 355, 462, 485, 571, 608
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	202, 572
DpnI	GATC	2 cut(s)	6, 480
DpnII	GATC	2 cut(s)	4, 478
Eam1104I	CTCTTC	4 cut(s)	298, 364, 381, 561
EarI	CTCTTC	4 cut(s)	298, 364, 381, 561
Ecl136II	GAGCTC	4 cut(s)	201, 216, 462, 571
Eco24I	GRGCYC	4 cut(s)	203, 218, 464, 573
Eco53kI	GAGCTC	4 cut(s)	201, 216, 462, 571
Eco57I	CTGAAG	5 cut(s)	47, 405, 443, 473, 603
EcoICRI	GAGCTC	4 cut(s)	201, 216, 462, 571
EcoT38I	GRGCYC	4 cut(s)	203, 218, 464, 573
FaeI	CATG	2 cut(s)	166, 314
FaiI	YATR	8 cut(s)	164, 233, 312, 321, 468, 488, 551, 648
FatI	CATG	2 cut(s)	162, 310
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	4 cut(s)	203, 218, 464, 573
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	129, 236
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	166, 314
HinfI	GANTC	4 cut(s)	22, 269, 276, 521
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	19, 211, 273
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	6 cut(s)	156, 160, 370, 485, 526, 633
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	114, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 577
HpyF3I	CTNAG	2 cut(s)	202, 572
Hsp92II	CATG	2 cut(s)	166, 314
Kzo9I	GATC	2 cut(s)	4, 478
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	4 cut(s)	286, 396, 594, 602
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	129, 236
MalI	GATC	2 cut(s)	6, 480
MboI	GATC	2 cut(s)	4, 478
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	203, 218, 464, 573
MluCI	AATT	3 cut(s)	39, 108, 593
MnlI	CCTC	6 cut(s)	254, 316, 367, 382, 529, 538
MroXI	GAANNNNTTC	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	55, 577
NdeII	GATC	2 cut(s)	4, 478
NlaIII	CATG	2 cut(s)	166, 314
NlaIV	GGNNCC	3 cut(s)	6, 341, 381
PciSI	GCTCTTC	1 cut(s)	561
PctI	GAATGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	4 cut(s)	22, 269, 276, 521
PkrI	GCNGC	1 cut(s)	103
Psp124BI	GAGCTC	4 cut(s)	203, 218, 464, 573
PspN4I	GGNNCC	3 cut(s)	6, 341, 381
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SacI	GAGCTC	4 cut(s)	203, 218, 464, 573
SapI	GCTCTTC	1 cut(s)	561
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	4, 478
SduI	GDGCHC	4 cut(s)	203, 218, 464, 573
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	39, 108, 593
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	129, 236
SstI	GAGCTC	4 cut(s)	203, 218, 464, 573
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	39, 108, 593
TfiI	GAWTC	4 cut(s)	22, 269, 276, 521
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	8 cut(s)	138, 179, 220, 299, 579, 607, 648, 663
TspRI	CASTG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	2 cut(s)	129, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.