Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

28289168 .. 28289806

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1137900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATCCAATCAAGTTATTGAAGTTCCAAGCAACCCACAAATACAAGAAACACCATCATCATCGTTTGAGCAATTTCTTCCTTTATTTTTTGACAGCATTAACTTGCAGTTTATTTTGTTTTAGCTCTTTGTGGCTTCCCCCTGTATCTTCTTCCACGAAGGTTTTTGTCTTCGTTTCCGTCCCGAAAATCAGTTCAGTGTTCTTGAGCTCCAAGTTTGTGTTCATTCTAGGGAATCTCATTGTTGTTGTCCTTGTGGGACAATGCAAAATCTTTTCCACATGGACTTGTCCATCAAATATTGGTGATCAATATGAAAGTATGAAGAGGGTCCAAAGCCACCACAGCTCTTCAGTCCACCAAGAAAGGGAAGACAATACCTTGAACACTCTTTTGGTTGAAGAAAGGGTAGTGCAAAAGCGGACTTGTAGTCCTTGTGGAGATTTATTAGAAGCTGTGGAAGAGAAAGGATTGGTTGGAGGAAGTGAGGAAGTAGTGGAGGTCAAAGAGGATATAGATGAAGATGATGAGCTCAATTTACCTGACGAAGATCAGAAATTAAACCAAAGAGCTGATGATTTCATTGCAAGGGTTAATGAGAGGAGGAGGTTTGAACTGCTTTGTACTGATGGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

213

Amino Acids

24.25

Weight (kDa)

5.76

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	22, 385, 401, 614
AhdI	GACNNNNNGTC	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 377, 409
AluBI	AGCT	6 cut(s)	126, 210, 348, 455, 532, 572
AluI	AGCT	6 cut(s)	126, 210, 348, 455, 532, 572
Alw21I	GWGCWC	2 cut(s)	212, 534
AlwI	GGATC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	212, 534
BbsI	GAAGAC	2 cut(s)	163, 378
Bbv12I	GWGCWC	2 cut(s)	212, 534
BccI	CCATC	3 cut(s)	63, 301, 623
BclI	TGATCA	1 cut(s)	307
BfaI	CTAG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	331
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	6, 332
BpiI	GAAGAC	2 cut(s)	163, 378
BpuEI	CTTGAG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	582
BseRI	GAGGAG	2 cut(s)	616, 619
BsiHKAI	GWGCWC	2 cut(s)	212, 534
BslFI	GGGAC	2 cut(s)	167, 273
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	167, 273
Bsp1286I	GDGCHC	2 cut(s)	212, 534
Bsp143I	GATC	3 cut(s)	4, 307, 550
BspACI	CCGC	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	6, 332
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	582
BssMI	GATC	3 cut(s)	4, 307, 550
Bst6I	CTCTTC	3 cut(s)	320, 355, 456
BstKTI	GATC	3 cut(s)	7, 310, 553
BstMBI	GATC	3 cut(s)	4, 307, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	163, 378
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsIMutI	CAGTG	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	8 cut(s)	126, 136, 210, 339, 348, 455, 532, 572
CviKI_1	RGCY	8 cut(s)	126, 136, 210, 339, 348, 455, 532, 572
CviQI	GTAC	1 cut(s)	624
DpnI	GATC	3 cut(s)	6, 309, 552
DpnII	GATC	3 cut(s)	4, 307, 550
DriI	GACNNNNNGTC	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	320, 355, 456
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	3 cut(s)	320, 355, 456
Ecl136II	GAGCTC	2 cut(s)	210, 532
Eco24I	GRGCYC	2 cut(s)	212, 534
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	2 cut(s)	210, 532
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	2 cut(s)	210, 532
EcoT38I	GRGCYC	2 cut(s)	212, 534
FaeI	CATG	1 cut(s)	285
FaiI	YATR	4 cut(s)	283, 315, 323, 515
FaqI	GGGAC	2 cut(s)	167, 273
FatI	CATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	307
FriOI	GRGCYC	2 cut(s)	212, 534
FspBI	CTAG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	285
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	2 cut(s)	184, 205
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	108, 267, 415, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	4, 307, 550
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	2 cut(s)	156, 555
MaeI	CTAG	1 cut(s)	230
MalI	GATC	3 cut(s)	6, 309, 552
MboI	GATC	3 cut(s)	4, 307, 550
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	212, 534
MluCI	AATT	3 cut(s)	73, 535, 557
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	8 cut(s)	321, 473, 481, 493, 502, 594, 597, 600
MseI	TTAA	3 cut(s)	101, 560, 594
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	3 cut(s)	4, 307, 550
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	6, 332
PciSI	GCTCTTC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	235
Psp124BI	GAGCTC	2 cut(s)	212, 534
PspN4I	GGNNCC	2 cut(s)	6, 332
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SacI	GAGCTC	2 cut(s)	212, 534
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	101, 560, 594
Sau3AI	GATC	3 cut(s)	4, 307, 550
Sau96I	GGNCC	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	212, 534
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	3 cut(s)	73, 535, 557
SsiI	CCGC	1 cut(s)	421
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	2 cut(s)	212, 534
TasI	AATT	3 cut(s)	73, 535, 557
TatI	WGTACW	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	101, 560, 594
Tru9I	TTAA	3 cut(s)	101, 560, 594
TscAI	CASTG	1 cut(s)	204
TspDTI	ATGAA	5 cut(s)	214, 330, 338, 534, 571
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	331
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.