Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

17995364 .. 17996178

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAATCTAAATTACCAAATTAACCCCATCTCACCGTTATATAAACCAGTAATTACCTCTTACTCCACCCTTGTTTTTGGTAGAATATATAACCTCCAAATGGATCCAATCAAGTTATTGAAGTTCCAAGCAACCCACAAATACAAGAAACACCATCATCATCCTTTGAGCAATTTCTTCCTTTATTTTTTGACAGCAATAACTTGCAGTTTATTTTGTTTTTGCTCTCTGTGGCTTCCCCCTGTATATTCTTCCACGAAGGTTTTTGTCTTCGTTTCCATCCCGAAAATCAGTTCAGTGTTCTTGAGCTCCAAGTTTGTGTTCATTCTAGGGAATCTCATTGTCGTTGCCCTTGTGGGACAATCCAAAATCTTTTCCACACGGACTAGTCCATCAAATATAGGTGACCAATATGAAAGTATGAAGAGGGTCCAAAGCCACCACAGCTCTTCAGCCCACCAAGAAAGGGAAGACAATACCTTGAACACTCTTTTGGTTGGAGAAAGGGTAGTGCAAAAGCGGACTTGTGGTCCTTGTGGAGATTTATTAGAAGCTGTGGAAGAGAAAGGATTGGTTGGAGGAAGTGAGGAAGTAGTGGGGGTGAAAGAGGACATAGATGAAGATGATGAGCTCAATTTACCTGACGAAGATCAGAAATTAAACCAAAGAGCTGATGATTTCATTGCAAGGGTTAATGAGAGGAGGAGGTTTGAACTGCTTTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

243

Amino Acids

27.67

Weight (kDa)

6.71

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	2 cut(s)	98, 111
AcuI	CTGAAG	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	100, 466
AgsI	TTSAA	3 cut(s)	121, 484, 713
AhdI	GACNNNNNGTC	1 cut(s)	528
AhlI	ACTAGT	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 476, 508
AluBI	AGCT	5 cut(s)	309, 447, 554, 631, 671
AluI	AGCT	5 cut(s)	309, 447, 554, 631, 671
Alw21I	GWGCWC	2 cut(s)	311, 633
AlwI	GGATC	2 cut(s)	98, 111
AspS9I	GGNCC	2 cut(s)	430, 530
AsuHPI	GGTGA	3 cut(s)	24, 416, 613
AvaII	GGWCC	2 cut(s)	430, 530
BamHI	GGATCC	1 cut(s)	103
BanII	GRGCYC	2 cut(s)	311, 633
BbsI	GAAGAC	2 cut(s)	262, 477
Bbv12I	GWGCWC	2 cut(s)	311, 633
BccI	CCATC	4 cut(s)	35, 162, 287, 400
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	2 cut(s)	329, 387
Bme18I	GGWCC	2 cut(s)	430, 530
BmeRI	GACNNNNNGTC	1 cut(s)	528
BmgT120I	GGNCC	2 cut(s)	430, 530
BmiI	GGNNCC	2 cut(s)	105, 431
BpiI	GAAGAC	2 cut(s)	262, 477
BpuEI	CTTGAG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 466
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	681
BseGI	GGATG	2 cut(s)	160, 279
BseLI	CCNNNNNNNGG	2 cut(s)	100, 466
BseMI	GCAATG	1 cut(s)	681
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	715, 718
BsiHKAI	GWGCWC	2 cut(s)	311, 633
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	100, 466
BsmFI	GGGAC	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	311, 633
Bsp143I	GATC	2 cut(s)	103, 649
BspACI	CCGC	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	105, 431
BspPI	GGATC	2 cut(s)	98, 111
BspQI	GCTCTTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	103, 649
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	3 cut(s)	419, 454, 555
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	160, 279
BstKTI	GATC	2 cut(s)	106, 652
BstMBI	GATC	2 cut(s)	103, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	404
BstV2I	GAAGAC	2 cut(s)	262, 477
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	160, 279
BtsIMutI	CAGTG	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	430, 530
CviJI	RGCY	8 cut(s)	235, 309, 438, 447, 455, 554, 631, 671
CviKI_1	RGCY	8 cut(s)	235, 309, 438, 447, 455, 554, 631, 671
DpnI	GATC	2 cut(s)	105, 651
DpnII	GATC	2 cut(s)	103, 649
DriI	GACNNNNNGTC	1 cut(s)	528
Eam1104I	CTCTTC	3 cut(s)	419, 454, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	528
EarI	CTCTTC	3 cut(s)	419, 454, 555
Ecl136II	GAGCTC	2 cut(s)	309, 631
Eco24I	GRGCYC	2 cut(s)	311, 633
Eco47I	GGWCC	2 cut(s)	430, 530
Eco53kI	GAGCTC	2 cut(s)	309, 631
Eco57I	CTGAAG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	404
EcoICRI	GAGCTC	2 cut(s)	309, 631
EcoO65I	GGTNACC	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	311, 633
FaiI	YATR	9 cut(s)	40, 42, 88, 90, 247, 401, 414, 422, 614
FaqI	GGGAC	1 cut(s)	372
FokI	GGATG	2 cut(s)	147, 266
FriOI	GRGCYC	2 cut(s)	311, 633
FspBI	CTAG	2 cut(s)	329, 387
HinfI	GANTC	2 cut(s)	4, 334
HphI	GGTGA	3 cut(s)	24, 416, 613
Hpy188I	TCNGA	1 cut(s)	654
Hpy188III	TCNNGA	2 cut(s)	283, 304
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	207, 514, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	103, 649
LguI	GCTCTTC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	3 cut(s)	60, 255, 654
MaeI	CTAG	2 cut(s)	329, 387
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	105, 651
MboI	GATC	2 cut(s)	103, 649
MboII	GAAGA	9 cut(s)	169, 243, 262, 436, 441, 482, 572, 632, 659
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	311, 633
MluCI	AATT	6 cut(s)	10, 18, 51, 172, 634, 656
MmeI	TCCRAC	2 cut(s)	478, 556
MnlI	CCTC	9 cut(s)	67, 104, 420, 572, 580, 601, 693, 696, 699
MseI	TTAA	3 cut(s)	21, 659, 693
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	2 cut(s)	103, 649
NlaIV	GGNNCC	2 cut(s)	105, 431
NmuCI	GTSAC	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	4, 334
Psp124BI	GAGCTC	2 cut(s)	311, 633
PspEI	GGTNACC	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	105, 431
PspPI	GGNCC	2 cut(s)	430, 530
PsuI	RGATCY	1 cut(s)	103
SacI	GAGCTC	2 cut(s)	311, 633
SapI	GCTCTTC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	21, 659, 693
Sau3AI	GATC	2 cut(s)	103, 649
Sau96I	GGNCC	2 cut(s)	430, 530
SduI	GDGCHC	2 cut(s)	311, 633
SinI	GGWCC	2 cut(s)	430, 530
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	6 cut(s)	10, 18, 51, 172, 634, 656
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	2 cut(s)	329, 387
SstI	GAGCTC	2 cut(s)	311, 633
TaaI	ACNGT	1 cut(s)	36
TasI	AATT	6 cut(s)	10, 18, 51, 172, 634, 656
TfiI	GAWTC	2 cut(s)	4, 334
Tru1I	TTAA	3 cut(s)	21, 659, 693
Tru9I	TTAA	3 cut(s)	21, 659, 693
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	6 cut(s)	17, 313, 429, 437, 633, 670
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	430, 530
XspI	CTAG	2 cut(s)	329, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.