RLG00000007046

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005407
Physical Location & Seq
Forward (+)
13014004 .. 13014756
753 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007046

Sequence Viewer

Length: 753 bp
ATGGATCCCATTAAGGCTCAAAAGGTTCGAGCCTGCAAGCGCTACAAGAAGAGTGATTCGTTTTTCCAGAGTCTCATTCTTCATTCCCTCCTTGCGCTAGCTTGCAGTTTATTTTGTTCCTACTCTAACTCGTTTCCCAATTCTTTTTACACTATCAAACACCTCTTGTTTAATTCTCTTCCCAATACTTGGTCGTGGTTCGTTAACCCTAGCTGCCTGTTCGTGGTAGTCAATTTCATTGTGGTGTTCCTTATTGGAGAATCGAGGATCAGCGGCAAGCAATCCTCATCTCAGGCCGATCAGGTTTACGATGAGTATGTTGCGAGGACTCGAAGATTTAGGGGACGTCCTTCCACGACAGTTCAAGAGATCAAGGAAGAAGAGAAGATCGTAGTGACAATGGATAGCCCGAAGGAGGACAATGCTAATGGGATTGAAGATCGCAAAGAAGTTGATGAAGTACCACTGAAAGAAGAGAGTGATGGTCAGGATGAAGATTTCGAAGAGTGCGAGGAAAATGTTATCGAAAATCAAAAAAATGAAGAAGAAGAAGGGAAAGAAATGGAAGAAGAACACGAACAAGGAGAAGAGACAGAAATGGAAGAAGAACACGAACAAGAAGAACAAGAAAAAGAGGAGGAAGAGGACGCTGTAGGGATACCGGCTGAGGAACTAAACAAAAGGGTTGAAGACTTCATTGCAAGGGTTAATAAGCAAAGGTTGCTTGAAGCTAGATTTTTAATTAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

251

Amino Acids

29.12

Weight (kDa)

4.52

Isoelectric Point (pI)

71.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 68 - 89 1.7e-06 Domain of unknown function (DUF4408)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 349
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 12, 275
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 1 cut(s) 462
AfeI AGCGCT 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 189, 223, 415
AgsI TTSAA 4 cut(s) 365, 437, 689, 728
AluBI AGCT 3 cut(s) 101, 213, 731
AluI AGCT 3 cut(s) 101, 213, 731
Alw26I GTCTC 2 cut(s) 77, 584
AlwI GGATC 2 cut(s) 12, 275
Aor51HI AGCGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 213
AspLEI GCGC 2 cut(s) 42, 97
AsuII TTCGAA 1 cut(s) 501
AsuNHI GCTAGC 1 cut(s) 97
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 696
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 476
BciVI GTATCC 1 cut(s) 651
BcoDI GTCTC 2 cut(s) 77, 584
BfaI CTAG 3 cut(s) 98, 210, 732
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 43
BfuI GTATCC 1 cut(s) 651
BisI GCNGC 2 cut(s) 214, 274
BlsI GCNGC 2 cut(s) 215, 275
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 666
Bpu14I TTCGAA 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 223, 415
Bse118I RCCGGY 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 696
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 3 cut(s) 189, 223, 415
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 2 cut(s) 305, 657
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 3 cut(s) 189, 223, 415
BsmAI GTCTC 2 cut(s) 77, 584
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 501
Bsp143I GATC 6 cut(s) 4, 267, 298, 369, 387, 439
BspACI CCGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 304, 658
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 2 cut(s) 12, 275
BspT104I TTCGAA 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 661
BssMI GATC 6 cut(s) 4, 267, 298, 369, 387, 439
BssNI GRCGYC 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 7 cut(s) 44, 183, 375, 468, 498, 582, 636
BstACI GRCGYC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 721
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 5 cut(s) 34, 38, 99, 103, 278
BstDEI CTNAG 2 cut(s) 291, 666
BstF5I GGATG 1 cut(s) 496
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 2 cut(s) 42, 97
BstKTI GATC 6 cut(s) 7, 270, 301, 372, 390, 442
BstMAI GTCTC 2 cut(s) 77, 584
BstMBI GATC 6 cut(s) 4, 267, 298, 369, 387, 439
BstMWI GCNNNNNNNGC 1 cut(s) 721
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 464
Cac8I GCNNGC 5 cut(s) 34, 38, 99, 103, 278
CfoI GCGC 2 cut(s) 42, 97
Cfr10I RCCGGY 1 cut(s) 661
CseI GACGC 1 cut(s) 656
Csp6I GTAC 1 cut(s) 461
CviJI RGCY 8 cut(s) 17, 32, 101, 213, 296, 408, 665, 731
CviKI_1 RGCY 8 cut(s) 17, 32, 101, 213, 296, 408, 665, 731
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 2 cut(s) 291, 666
DpnI GATC 6 cut(s) 6, 269, 300, 371, 389, 441
DpnII GATC 6 cut(s) 4, 267, 298, 369, 387, 439
Eam1104I CTCTTC 7 cut(s) 44, 183, 375, 468, 498, 582, 636
EarI CTCTTC 7 cut(s) 44, 183, 375, 468, 498, 582, 636
Eco47III AGCGCT 1 cut(s) 41
FaiI YATR 1 cut(s) 318
FaqI GGGAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 214, 274
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 214, 274
FspBI CTAG 3 cut(s) 98, 210, 732
GlaI GCGC 2 cut(s) 41, 96
GluI GCNGC 2 cut(s) 214, 274
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 662
HgaI GACGC 1 cut(s) 656
HhaI GCGC 2 cut(s) 42, 97
Hin1I GRCGYC 1 cut(s) 346
Hin6I GCGC 2 cut(s) 40, 95
HinP1I GCGC 2 cut(s) 40, 95
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 4 cut(s) 56, 70, 260, 328
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 1 cut(s) 662
Hpy166II GTNNAC 2 cut(s) 205, 307
Hpy188III TCNNGA 3 cut(s) 67, 365, 488
Hpy8I GTNNAC 2 cut(s) 205, 307
HpyAV CCTTC 3 cut(s) 360, 406, 545
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 36, 105, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 721
HpyF3I CTNAG 2 cut(s) 291, 666
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 1 cut(s) 346
HspAI GCGC 2 cut(s) 40, 95
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 6 cut(s) 4, 267, 298, 369, 387, 439
LpnPI CCDG 7 cut(s) 46, 80, 230, 278, 287, 473, 675
Lsp1109I GCAGC 1 cut(s) 200
MaeI CTAG 3 cut(s) 98, 210, 732
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 394
MalI GATC 6 cut(s) 6, 269, 300, 371, 389, 441
MboI GATC 6 cut(s) 4, 267, 298, 369, 387, 439
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 139, 172, 232, 741
MlyI GAGTC 2 cut(s) 79, 322
MseI TTAA 5 cut(s) 12, 171, 204, 708, 740
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 1 cut(s) 662
MwoI GCNNNNNNNGC 1 cut(s) 721
NdeII GATC 6 cut(s) 4, 267, 298, 369, 387, 439
NheI GCTAGC 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 394
NspV TTCGAA 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 2 cut(s) 56, 260
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 2 cut(s) 215, 275
PleI GAGTC 2 cut(s) 78, 322
PpsI GAGTC 2 cut(s) 78, 322
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 5 cut(s) 12, 171, 204, 708, 740
SatI GCNGC 2 cut(s) 214, 274
Sau3AI GATC 6 cut(s) 4, 267, 298, 369, 387, 439
SchI GAGTC 2 cut(s) 79, 322
SetI ASST 8 cut(s) 27, 103, 165, 215, 306, 349, 722, 733
SfcI CTRYAG 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 4 cut(s) 139, 172, 232, 741
SsiI CCGC 1 cut(s) 273
SspMI CTAG 3 cut(s) 98, 210, 732
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 349
TaqI TCGA 5 cut(s) 28, 263, 331, 501, 525
TasI AATT 4 cut(s) 139, 172, 232, 741
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 2 cut(s) 56, 260
Tru1I TTAA 5 cut(s) 12, 171, 204, 708, 740
Tru9I TTAA 5 cut(s) 12, 171, 204, 708, 740
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 6 cut(s) 71, 226, 471, 507, 555, 685
TspRI CASTG 1 cut(s) 471
Van91I CCANNNNNTGG 1 cut(s) 189
XspI CTAG 3 cut(s) 98, 210, 732
ZraI GACGTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.