Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

24730615 .. 24731256

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1153300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGATCCAATCAAGTTACTGAAGTTCCAAGCAGTCCACAAACACAAGAAACACCATCATCCTTTGAGCAATTTCTTCCTTCATATTTTTACTGCATTAATTTGCAGTTTATTTTGTTTTAGCCCTTTGTGGCTTCCCTCTGTATCTTCTTCCATGATGGTCTTTGTCCTCGTTACCGTCCCGAAAATCAGTTCAGTATTCTTGAGCTCCAAGTTTGTGTTCATTCTAGGGAATCTCATTGTTGTTGCCCTTATAGGAGAATCGAAAATCTTTTCTACAGGGACTTCGACATCTAATATTGTTGATCAATACGAAAGTATGAAAAGGTTCCAAAGCCAGCAGAGCTATTCCGGCTACCAAGAAAGGGAACTCAAGACCTTGAATACTCTTTTGGATGAAGAAAGGGTAGTGCTGAAGAGGACTTGTGGAGATTTATTAGAAGCTGTAGAAGAGAAAGGACTGGCTGGAGAAAGTGAGGAAGTAATGGAGGAGGTGAAAGAGGATTTAGATGAAGATGAAGATGATGATGAGCTCAATTTACCTGATGAAGATCAGAAATTAAACCAAAGAGCTGATGATTTCATTGCAAGGGTCAATGAGAGGAGGAGGTTTGAACTGCTATTTGTAACTGATGGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

214

Amino Acids

24.42

Weight (kDa)

4.9

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	2 cut(s)	41, 434
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	382, 614
AjuI	GAANNNNNNNTTGG	4 cut(s)	203, 235, 374, 406
AluBI	AGCT	5 cut(s)	207, 345, 443, 532, 572
AluI	AGCT	5 cut(s)	207, 345, 443, 532, 572
Alw21I	GWGCWC	2 cut(s)	209, 534
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	634
AseI	ATTAAT	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	505
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	209, 534
Bbv12I	GWGCWC	2 cut(s)	209, 534
BccI	CCATC	3 cut(s)	63, 151, 626
BclI	TGATCA	1 cut(s)	304
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	276, 444
BmiI	GGNNCC	2 cut(s)	6, 329
BpmI	CTGGAG	1 cut(s)	486
BpuEI	CTTGAG	2 cut(s)	223, 356
BsaBI	GATNNNNATC	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	549
BseGI	GGATG	2 cut(s)	58, 400
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	3 cut(s)	503, 616, 619
BshFI	GGCC	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	209, 534
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	164, 295
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	164, 295
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	209, 534
Bsp143I	GATC	3 cut(s)	4, 304, 550
BspANI	GGCC	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	6, 329
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	465
BssMI	GATC	3 cut(s)	4, 304, 550
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	410, 444
BstC8I	GCNNGC	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	58, 400
BstKTI	GATC	3 cut(s)	7, 307, 553
BstMBI	GATC	3 cut(s)	4, 304, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	342, 351
BstSFI	CTRYAG	2 cut(s)	276, 444
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	58, 400
Cac8I	GCNNGC	1 cut(s)	338
CviAII	CATG	1 cut(s)	154
DpnI	GATC	3 cut(s)	6, 306, 552
DpnII	GATC	3 cut(s)	4, 304, 550
Eam1104I	CTCTTC	2 cut(s)	410, 444
EarI	CTCTTC	2 cut(s)	410, 444
Ecl136II	GAGCTC	2 cut(s)	207, 532
Eco24I	GRGCYC	2 cut(s)	209, 534
Eco53kI	GAGCTC	2 cut(s)	207, 532
Eco57I	CTGAAG	2 cut(s)	41, 434
EcoICRI	GAGCTC	2 cut(s)	207, 532
EcoT38I	GRGCYC	2 cut(s)	209, 534
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	84, 155, 254, 320
FaqI	GGGAC	2 cut(s)	164, 295
FatI	CATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	304
FokI	GGATG	2 cut(s)	45, 407
FriOI	GRGCYC	2 cut(s)	209, 534
FspBI	CTAG	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	2 cut(s)	232, 260
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	3 cut(s)	181, 202, 373
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	95, 105, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	342, 351
Hsp92II	CATG	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	4, 304, 550
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	6 cut(s)	264, 350, 364, 446, 450, 555
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	15, 172, 625
MalI	GATC	3 cut(s)	6, 306, 552
MboI	GATC	3 cut(s)	4, 304, 550
MboII	GAAGA	9 cut(s)	67, 138, 141, 410, 427, 461, 524, 530, 560
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	209, 534
MluCI	AATT	4 cut(s)	70, 99, 535, 557
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	98, 560
MspI	CCGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	342, 351
NdeII	GATC	3 cut(s)	4, 304, 550
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	6, 329
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	232, 260
PshBI	ATTAAT	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	209, 534
PspN4I	GGNNCC	2 cut(s)	6, 329
PsuI	RGATCY	1 cut(s)	4
SacI	GAGCTC	2 cut(s)	209, 534
SaqAI	TTAA	2 cut(s)	98, 560
Sau3AI	GATC	3 cut(s)	4, 304, 550
SduI	GDGCHC	2 cut(s)	209, 534
SfcI	CTRYAG	2 cut(s)	276, 444
SmlI	CTYRAG	2 cut(s)	202, 371
SmoI	CTYRAG	2 cut(s)	202, 371
Sse9I	AATT	4 cut(s)	70, 99, 535, 557
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	2 cut(s)	209, 534
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	263, 287
TasI	AATT	4 cut(s)	70, 99, 535, 557
TfiI	GAWTC	2 cut(s)	232, 260
Tru1I	TTAA	2 cut(s)	98, 560
Tru9I	TTAA	2 cut(s)	98, 560
TspDTI	ATGAA	8 cut(s)	71, 211, 335, 411, 525, 531, 561, 571
VspI	ATTAAT	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.