Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

47142063 .. 47143325

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGATCCCATTAAGGCTCAAAAGGTTCGAGCCATCAAGCGCTACAAGAAGAGTGATTCGTTTTTCCAGAGTCTCATTCTTCATTCCCTTCTTGCGCTAGCTTGCAGTTTATTTTGTTCCTACTCTAACTCGTTTCCCAATTCTTTTTACACTATCAAACACCTCTTGTTTAATTCTCTTCCCAATACTTGGTCGTGGTTCGTTAAACCTAGCTGCCTGTTCGTGGTAGTCAATTTCATTGTGGTGTTCCTTATTGGAGAATCGAGGATCAGTGGCAAGCAATCCTCATCTCCGGCCGATCAGGTTTACGATGAGTATGTTGCGAGGACTCGAAGTCTTAGGGGACGTCCTTCCACGACAGTTCAAGAGATCAAGAAAGAAGAGAAGATCGTAGTGAAAATGGATGGCCCGAAGGAGGACAATGCTAATGGGATTGAAGATCGCAAAGAAGTTGATGAAGTACCACTGAAAGAAGAGAGTGATGGTCAGGATGAAGATTTCGAAGAGTGCGAGGAAAATGTTATCGAAAATGAAAAAAATGAAGAAGAAGAAGAGAAAGAAATGGAAGAAGAACACGAACAAGAAGAAGAGACAGAAATGGAAGAGGAACACGAACAACAAGAAGAAAAAGAACAAGAAAAAGAGGAGGAAGAGGACGCTGTAGGGATACCGGCTGAGGAACTAAACAAAAGGGTTGAAGACTTCATTACAAGGGTTAATAAGCAAAGGTTGCTTGAAGCTAGATTTTTAATTAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

253

Amino Acids

29.6

Weight (kDa)

4.56

Isoelectric Point (pI)

73.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	67 - 89	2.7e-07	Domain of unknown function (DUF4408)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	189
AclWI	GGATC	2 cut(s)	12, 275
AcoI	YGGCCR	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	462
AfeI	AGCGCT	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	189, 223, 415
AgsI	TTSAA	4 cut(s)	365, 437, 698, 737
AhdI	GACNNNNNGTC	1 cut(s)	333
AluBI	AGCT	3 cut(s)	101, 213, 740
AluI	AGCT	3 cut(s)	101, 213, 740
Alw26I	GTCTC	2 cut(s)	77, 584
AlwI	GGATC	2 cut(s)	12, 275
Aor51HI	AGCGCT	1 cut(s)	41
AoxI	GGCC	2 cut(s)	294, 406
ApeKI	GCWGC	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	42, 97
AspS9I	GGNCC	1 cut(s)	407
AsuII	TTCGAA	1 cut(s)	501
AsuNHI	GCTAGC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	705
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	41, 398, 476
BciVI	GTATCC	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	77, 584
BfaI	CTAG	3 cut(s)	98, 210, 741
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	6
BmtI	GCTAGC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 223, 415
Bse118I	RCCGGY	1 cut(s)	670
BseGI	GGATG	2 cut(s)	409, 496
BseLI	CCNNNNNNNGG	3 cut(s)	189, 223, 415
BseMII	CTCAG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	659
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	296, 408
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	293, 671
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	189, 223, 415
BsmAI	GTCTC	2 cut(s)	77, 584
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	296, 408
Bsp119I	TTCGAA	1 cut(s)	501
Bsp143I	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
BspANI	GGCC	2 cut(s)	296, 408
BspCNI	CTCAG	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	2 cut(s)	12, 275
BspT104I	TTCGAA	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	670
BssAI	RCCGGY	1 cut(s)	670
BssMI	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
BssNI	GRCGYC	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	9 cut(s)	44, 183, 375, 468, 498, 546, 582, 597, 645
BstACI	GRCGYC	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	99, 103, 278
BstDEI	CTNAG	2 cut(s)	338, 675
BstF5I	GGATG	2 cut(s)	409, 496
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	42, 97
BstKTI	GATC	6 cut(s)	7, 270, 301, 372, 390, 442
BstMAI	GTCTC	2 cut(s)	77, 584
BstMBI	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	296, 408
BtsCI	GGATG	2 cut(s)	409, 496
BtsIMutI	CAGTG	2 cut(s)	277, 464
Cac8I	GCNNGC	3 cut(s)	99, 103, 278
CfoI	GCGC	2 cut(s)	42, 97
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	407
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	461
CviJI	RGCY	8 cut(s)	17, 32, 101, 213, 296, 408, 674, 740
CviKI_1	RGCY	8 cut(s)	17, 32, 101, 213, 296, 408, 674, 740
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	2 cut(s)	338, 675
DpnI	GATC	6 cut(s)	6, 269, 300, 371, 389, 441
DpnII	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
DriI	GACNNNNNGTC	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	294
EagI	CGGCCG	1 cut(s)	294
Eam1104I	CTCTTC	9 cut(s)	44, 183, 375, 468, 498, 546, 582, 597, 645
Eam1105I	GACNNNNNGTC	1 cut(s)	333
EarI	CTCTTC	9 cut(s)	44, 183, 375, 468, 498, 546, 582, 597, 645
EclXI	CGGCCG	1 cut(s)	294
Eco47III	AGCGCT	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	294
FaiI	YATR	1 cut(s)	318
FaqI	GGGAC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	416, 503
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	98, 210, 741
GlaI	GCGC	2 cut(s)	41, 96
GluI	GCNGC	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	296, 408
HapII	CCGG	2 cut(s)	293, 671
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	42, 97
Hin1I	GRCGYC	1 cut(s)	346
Hin6I	GCGC	2 cut(s)	40, 95
HinP1I	GCGC	2 cut(s)	40, 95
HinfI	GANTC	4 cut(s)	56, 70, 260, 328
HpaII	CCGG	2 cut(s)	293, 671
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	67, 365, 373, 488
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	3 cut(s)	98, 360, 406
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	2 cut(s)	338, 675
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	346
HspAI	GCGC	2 cut(s)	40, 95
Kzo9I	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
LpnPI	CCDG	6 cut(s)	80, 230, 287, 306, 473, 684
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	3 cut(s)	98, 210, 741
MaeII	ACGT	1 cut(s)	346
MalI	GATC	6 cut(s)	6, 269, 300, 371, 389, 441
MboI	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	139, 172, 232, 750, 754
MlyI	GAGTC	2 cut(s)	79, 322
MseI	TTAA	6 cut(s)	12, 171, 204, 717, 749, 753
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	293, 671
MwoI	GCNNNNNNNGC	1 cut(s)	730
NdeII	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
NheI	GCTAGC	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	501
PacI	TTAATTAA	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	56, 260
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	78, 322
PpsI	GAGTC	2 cut(s)	78, 322
PshBI	ATTAAT	1 cut(s)	753
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	6 cut(s)	12, 171, 204, 717, 749, 753
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	6 cut(s)	4, 267, 298, 369, 387, 439
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	79, 322
SetI	ASST	9 cut(s)	27, 103, 165, 211, 215, 306, 349, 731, 742
SfcI	CTRYAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	139, 172, 232, 750, 754
SspMI	CTAG	3 cut(s)	98, 210, 741
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	5 cut(s)	28, 263, 331, 501, 525
TasI	AATT	5 cut(s)	139, 172, 232, 750, 754
TfiI	GAWTC	2 cut(s)	56, 260
Tru1I	TTAA	6 cut(s)	12, 171, 204, 717, 749, 753
Tru9I	TTAA	6 cut(s)	12, 171, 204, 717, 749, 753
TscAI	CASTG	2 cut(s)	277, 471
TseI	GCWGC	1 cut(s)	213
TspDTI	ATGAA	7 cut(s)	71, 226, 471, 507, 546, 555, 694
TspRI	CASTG	2 cut(s)	277, 471
Van91I	CCANNNNNTGG	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	753
XspI	CTAG	3 cut(s)	98, 210, 741
ZraI	GACGTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.