Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

23653899 .. 23654917

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G222200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATCCAATCAAGGGTGAAAAGCTTCGAGCCATGAAGAGTTACAAGAAGCAGAACAACAGCCAAATTTTTTACAGTCTTATTGTTCATTTGCTTATTGCAATAGCATGCTGTTTACTTTGTTCCTACTCTCATTGGTTTCCTTTTCTCTACACTGCCAAACACTTGTTGTTTATGTCTCTTCCAAATTCTTGGTCCGGGTTCTTTAACCCCAGGTGCCTTTTCATTGTGGTCAATTTCATAGTTGTCTTCCTTATTGGAGAATCGCGGCTCAGCGGCAGGCAATCATCTCCCGCGAATGAGATGTACAACGAGTATGTTGAGAGAACTCGAAGTCTCAGGGCGCCAACCTCAATGTTTCAAGAGAAGAAAGAAGAGAGGACCGAACTGCCGATATTGAGTCAGAAGGAGGACAATGCGAAGATACTTGAAGAGAAGGAAGTTGATGAAACTAAAGAAGACAAGCATGAAGTTGATCAGGACGAAGACTTTAAAGAATGTGAGGGAACTGATGAAGAAGAAAAAGAAGAAGAAAAAGAGAAAAAAGAGGAAGAAATAGAACAAGAAAAAAAGGAGGAGGAGGAGGCAGCTGGAATTCCTGCTGAAGAACTAAACAAAAGAGTTGAAGCCTTTATTGCAAGGGTAAATAAGCAAAGGTCGCTGGAAGCTAGATTTTTGGTTTGTAGTAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

232

Amino Acids

27.08

Weight (kDa)

5.06

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	216, 343
AccII	CGCG	2 cut(s)	268, 296
AciI	CCGC	3 cut(s)	268, 276, 294
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	66, 187, 594
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	362, 431, 626
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	4 cut(s)	25, 590, 668, 692
AluI	AGCT	4 cut(s)	25, 590, 668, 692
Alw26I	GTCTC	2 cut(s)	183, 341
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	3 cut(s)	66, 187, 594
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	195, 381
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	195, 381
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	216, 343
BbsI	GAAGAC	3 cut(s)	241, 465, 492
BbvI	GCAGC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	183, 341
BfaI	CTAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	3 cut(s)	269, 277, 588
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	3 cut(s)	270, 278, 589
Bme1390I	CCNGG	2 cut(s)	199, 214
Bme18I	GGWCC	2 cut(s)	195, 381
BmgT120I	GGNCC	2 cut(s)	195, 381
BmiI	GGNNCC	3 cut(s)	6, 218, 345
BmrFI	CCNGG	2 cut(s)	199, 214
BpiI	GAAGAC	3 cut(s)	241, 465, 492
Bpu1102I	GCTNAGC	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	286, 352
BseRI	GAGGAG	3 cut(s)	590, 593, 596
BseXI	GCAGC	1 cut(s)	599
Bsh1236I	CGCG	2 cut(s)	268, 296
BshNI	GGYRCC	2 cut(s)	216, 343
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	183, 341
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	4, 475
Bsp1720I	GCTNAGC	1 cut(s)	272
BspACI	CCGC	3 cut(s)	268, 276, 294
BspCNI	CTCAG	2 cut(s)	285, 351
BspFNI	CGCG	2 cut(s)	268, 296
BspLI	GGNNCC	3 cut(s)	6, 218, 345
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	216, 343
BsrGI	TGTACA	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	4, 475
BssNI	GRCGYC	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	4 cut(s)	32, 186, 369, 426
BstACI	GRCGYC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	109, 281
BstDEI	CTNAG	2 cut(s)	272, 338
BstFNI	CGCG	2 cut(s)	268, 296
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	7, 478
BstMAI	GTCTC	2 cut(s)	183, 341
BstMBI	GATC	2 cut(s)	4, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 658
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	197, 212
BstUI	CGCG	2 cut(s)	268, 296
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	3 cut(s)	241, 465, 492
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	4
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	109, 281
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	195, 381
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	3 cut(s)	34, 108, 467
CviJI	RGCY	8 cut(s)	25, 32, 63, 271, 590, 629, 668, 692
CviKI_1	RGCY	8 cut(s)	25, 32, 63, 271, 590, 629, 668, 692
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	272, 338
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	2 cut(s)	6, 477
DpnII	GATC	2 cut(s)	4, 475
DraI	TTTAAA	1 cut(s)	493
Eam1104I	CTCTTC	4 cut(s)	32, 186, 369, 426
EarI	CTCTTC	4 cut(s)	32, 186, 369, 426
Eco47I	GGWCC	2 cut(s)	195, 381
Eco57I	CTGAAG	1 cut(s)	624
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	212
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
FaeI	CATG	3 cut(s)	37, 111, 470
FaiI	YATR	6 cut(s)	35, 109, 176, 242, 318, 468
FatI	CATG	3 cut(s)	33, 107, 466
FauI	CCCGC	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	269, 277, 588
Fsp4HI	GCNGC	3 cut(s)	269, 277, 588
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	3 cut(s)	269, 277, 588
HaeII	RGCGCY	1 cut(s)	347
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	37, 111, 470
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HindIII	AAGCTT	2 cut(s)	23, 690
HinfI	GANTC	2 cut(s)	263, 400
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	2 cut(s)	362, 479
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	400, 430
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	101, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 658
HpyF3I	CTNAG	2 cut(s)	272, 338
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	37, 111, 470
HspAI	GCGC	1 cut(s)	344
KasI	GGCGCC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	4, 475
LpnPI	CCDG	9 cut(s)	199, 211, 226, 265, 325, 464, 576, 612, 647
Lsp1109I	GCAGC	1 cut(s)	599
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	6, 477
MboI	GATC	2 cut(s)	4, 475
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	66, 187, 235, 594
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	9 cut(s)	361, 372, 403, 496, 541, 568, 571, 574, 577
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	207, 492
MspA1I	CMGCKG	2 cut(s)	276, 590
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	199, 214
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	2 cut(s)	268, 296
MwoI	GCNNNNNNNGC	2 cut(s)	635, 658
NarI	GGCGCC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	4, 475
NlaIII	CATG	3 cut(s)	37, 111, 470
NlaIV	GGNNCC	3 cut(s)	6, 218, 345
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	270, 278, 589
PleI	GAGTC	1 cut(s)	408
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	6, 218, 345
PspPI	GGNCC	2 cut(s)	195, 381
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	207, 492
SatI	GCNGC	3 cut(s)	269, 277, 588
Sau3AI	GATC	2 cut(s)	4, 475
Sau96I	GGNCC	2 cut(s)	195, 381
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	199, 214
SetI	ASST	7 cut(s)	27, 218, 353, 592, 659, 670, 694
SfoI	GGCGCC	1 cut(s)	345
SinI	GGWCC	2 cut(s)	195, 381
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	4 cut(s)	66, 187, 235, 594
SsiI	CCGC	3 cut(s)	268, 276, 294
SspDI	GGCGCC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	197, 212
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	28, 331
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	4 cut(s)	66, 187, 235, 594
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	2 cut(s)	271, 279
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	207, 492
Tru9I	TTAA	2 cut(s)	207, 492
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	587
TspDTI	ATGAA	7 cut(s)	50, 77, 214, 229, 462, 483, 528
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	195, 381
XapI	RAATTY	3 cut(s)	66, 187, 594
XceI	RCATGY	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.