Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001935.1

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Forward (+)

54728 .. 55204

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001935.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggtagtcaatttcattgtggtgttccttattggagaatcgaggatcagtggcaagcaatcctcatctccggccgatcaggtttacgatgagtatgttgcgaggactcgaagtcttaggggacgtccttccacgacagttcaagagatcaagaaagaagagaagatcgtagtgaaaatggatggcccgaaggaggacaatgctaatgggattgaagatcgcaaagaagttgatgaagtaccactcaaagaagagagtgatggtcaggatgaagatttcgaagagtgcgaggaaaatgttatcgaaaatgcaaaaaatgaagaagaagaagagaaagaaatggaagaagaacacgaacaagaagaagaggacgctgtagggataccggctgaggaactaaacaaaaggattgaagacttcattgcaagggttaataagcaaaggttgcttgaagctagatttttaattaatttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

158

Amino Acids

18.26

Weight (kDa)

4.38

Isoelectric Point (pI)

80.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	143, 215, 413, 452
AhdI	GACNNNNNGTC	1 cut(s)	111
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	2 cut(s)	72, 184
AseI	ATTAAT	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	176, 254
BciVI	GTATCC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	375
BmeRI	GACNNNNNGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	420
BseGI	GGATG	2 cut(s)	187, 274
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	381
BseX3I	CGGCCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 186
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	71, 386
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	74, 186
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	45, 76, 147, 165, 217
BspANI	GGCC	2 cut(s)	74, 186
BspCNI	CTCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	385
BssMI	GATC	5 cut(s)	45, 76, 147, 165, 217
BssNI	GRCGYC	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	5 cut(s)	153, 246, 276, 324, 360
BstACI	GRCGYC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	116, 390
BstF5I	GGATG	2 cut(s)	187, 274
BstKTI	GATC	5 cut(s)	48, 79, 150, 168, 220
BstMBI	GATC	5 cut(s)	45, 76, 147, 165, 217
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	420
BstZI	CGGCCG	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	74, 186
BtsCI	GGATG	2 cut(s)	187, 274
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	4 cut(s)	74, 186, 389, 455
CviKI_1	RGCY	4 cut(s)	74, 186, 389, 455
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	116, 390
DpnI	GATC	5 cut(s)	47, 78, 149, 167, 219
DpnII	GATC	5 cut(s)	45, 76, 147, 165, 217
DriI	GACNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	5 cut(s)	153, 246, 276, 324, 360
Eam1105I	GACNNNNNGTC	1 cut(s)	111
EarI	CTCTTC	5 cut(s)	153, 246, 276, 324, 360
EclXI	CGGCCG	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	72
FaiI	YATR	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	135
FokI	GGATG	2 cut(s)	194, 281
FspBI	CTAG	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	74, 186
HapII	CCGG	2 cut(s)	71, 386
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	38, 106
HpaII	CCGG	2 cut(s)	71, 386
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	3 cut(s)	143, 151, 266
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	138, 184
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	311, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	2 cut(s)	116, 390
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	45, 76, 147, 165, 217
LpnPI	CCDG	4 cut(s)	65, 84, 251, 399
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	124
MalI	GATC	5 cut(s)	47, 78, 149, 167, 219
MboI	GATC	5 cut(s)	45, 76, 147, 165, 217
MluCI	AATT	3 cut(s)	10, 465, 469
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	7 cut(s)	36, 73, 96, 187, 283, 361, 385
MseI	TTAA	3 cut(s)	432, 464, 468
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	2 cut(s)	71, 386
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	5 cut(s)	45, 76, 147, 165, 217
NspV	TTCGAA	1 cut(s)	279
PacI	TTAATTAA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	38
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PshBI	ATTAAT	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	432, 464, 468
Sau3AI	GATC	5 cut(s)	45, 76, 147, 165, 217
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	100
SetI	ASST	4 cut(s)	84, 127, 446, 457
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	10, 465, 469
SspMI	CTAG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	4 cut(s)	41, 109, 279, 303
TasI	AATT	3 cut(s)	10, 465, 469
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	432, 464, 468
Tru9I	TTAA	3 cut(s)	432, 464, 468
TscAI	CASTG	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	4, 249, 285, 333, 409
TspRI	CASTG	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	468
XspI	CTAG	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.