Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005407

Physical Location & Seq

Genomic Coordinates Reverse (-)

25867354 .. 25868103

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATCCCATCAAGGCTCAAAAGGTTCGAGCCATGAAGCTCTACAAGAAGAGTGATCCGTTTTTCCAGAGTCTCATTCTTCATTCTCTTCTTGCGCTAGCTTGCAGTTTGTTTTGTTCCTACTCTCATTCGTTTCCCAATTCCTTTTACGCTATCAAACACCTCTTGTTTAATTCTCTTCCCAATACTTGGTCGTGGTTCGTTAACCCTAGCTGCCTGTTCGTGGTGGTCAATTGCATTGTGGTGTTCCTTATTGGAGAATCGAGGATCATGAGTCGCAAGCAATCCTTGTCTCCGGTTGATCATGTTTACGATGAGTATGTTGCGAGGACTCGAAGTCTTAGGGGACGTCCCTCCACGACAGTTCAAGAGATCAAGAAACAAGAGAAGATCGTACTGATGACAATGGATGATCCGAAGGAGGACAATGCTAATGGCATTGAAGATCACACAGAGGTCAATGAAGTACTGCCACTGAAAGAAGATAGTGGTGATGGCCATGATGAAGATTTCGAAGAGTGCGAGGGAAATGTTACCGAAAATGAAATACATGATGAAGAAGAAGAAGAGAAAGAAATATTGGAAGAAGAAAACGAACAAGAAGACGATAAAGAACAAGAAAAAGAGGAGGAAGAGGAGGAGGCTATAGGGATACCAGCTGATGAACTAAACAAAAGAGTCGAAGACTTTATTGCAAGGGTTAATAAGCAAAGGTGGCTTGAAGCTAGATTTTTGGTGGGTAGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

250

Amino Acids

28.91

Weight (kDa)

4.6

Isoelectric Point (pI)

70.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	68 - 89	6.1e-07	Domain of unknown function (DUF4408)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50610 AT5G50710
fragaria_vesca	FvH4_4g23360 FvH4_5g08680
malus_domestica	MD06G1137900.v1.1 MD14G1153300.v1.1 MD16G1123500.v1.1
prunus_persica	Prupe.1G222200_v2.0.a1 Prupe.5G148200_v2.0.a1
pyrus_communis	pycom06g12910 pycom13g10690
rosa_chinensis	RchiOBHm_Chr4g0429751 RchiOBHm_Chr7g0189701
rosa_laevigata	RLG00000004596 RLG00000007046
rosa_multiflora	Rmu_sc0001924.1_g000018 Rmu_sc0001935.1_g000010
rosa_roxburghii	Rroxscaffold_3G00265250 Rroxscaffold_5G00371520
rosa_samantha	Rh4AG294100 Rh4BG300100 Rh4CG315800 Rh4DG297300 Rh7AG104400 Rh7BG106900 Rh7CG109000 Rh7DG107400
rosa_wichuraiana	Rw4G025450 Rw7G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	189
AclWI	GGATC	4 cut(s)	12, 50, 275, 407
AcoI	YGGCCR	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	2 cut(s)	396, 468
AfiI	CCNNNNNNNGG	2 cut(s)	189, 223
AgsI	TTSAA	3 cut(s)	368, 443, 722
AhdI	GACNNNNNGTC	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	6 cut(s)	40, 101, 213, 659, 725, 744
AluI	AGCT	6 cut(s)	40, 101, 213, 659, 725, 744
Alw26I	GTCTC	2 cut(s)	77, 297
AlwI	GGATC	4 cut(s)	12, 50, 275, 407
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	503
AsuII	TTCGAA	1 cut(s)	513
AsuNHI	GCTAGC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	609, 690
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	17, 488
BciVI	GTATCC	1 cut(s)	645
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	77, 297
BfaI	CTAG	4 cut(s)	98, 210, 726, 748
BfmI	CTRYAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	468
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	6
BmtI	GCTAGC	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	609, 690
Bpu14I	TTCGAA	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 223
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	189, 223
BseRI	GAGGAG	3 cut(s)	641, 650, 653
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	336, 360
BslI	CCNNNNNNNGG	2 cut(s)	189, 223
BsmAI	GTCTC	2 cut(s)	77, 297
BsmFI	GGGAC	2 cut(s)	336, 360
BsnI	GGCC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	513
Bsp143I	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
BspANI	GGCC	1 cut(s)	498
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	4 cut(s)	12, 50, 275, 407
BspT104I	TTCGAA	1 cut(s)	513
BssMI	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
BssNI	GRCGYC	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	6 cut(s)	44, 93, 183, 510, 561, 627
BstACI	GRCGYC	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	99, 103, 281
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	8 cut(s)	7, 58, 270, 304, 375, 393, 415, 448
BstMAI	GTCTC	2 cut(s)	77, 297
BstMBI	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	2 cut(s)	609, 690
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	99, 103, 281
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	395, 467
CviAII	CATG	5 cut(s)	34, 271, 305, 500, 551
CviQI	GTAC	2 cut(s)	395, 467
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	8 cut(s)	6, 57, 269, 303, 374, 392, 414, 447
DpnII	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
DriI	GACNNNNNGTC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	6 cut(s)	44, 93, 183, 510, 561, 627
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	6 cut(s)	44, 93, 183, 510, 561, 627
FaeI	CATG	5 cut(s)	37, 274, 308, 503, 554
FaiI	YATR	7 cut(s)	35, 272, 306, 321, 501, 552, 647
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	2 cut(s)	336, 360
FatI	CATG	5 cut(s)	33, 270, 304, 499, 550
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	4 cut(s)	98, 210, 726, 748
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	5 cut(s)	37, 274, 308, 503, 554
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	5 cut(s)	70, 260, 274, 331, 678
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	205, 310
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	4 cut(s)	67, 271, 368, 376
Hpy8I	GTNNAC	2 cut(s)	205, 310
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	105, 237, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	715
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	349
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	5 cut(s)	37, 274, 308, 503, 554
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
LpnPI	CCDG	4 cut(s)	80, 230, 309, 669
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	4 cut(s)	98, 210, 726, 748
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	8 cut(s)	6, 57, 269, 303, 374, 392, 414, 447
MboI	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	3 cut(s)	139, 172, 232
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	4 cut(s)	79, 283, 325, 687
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	3 cut(s)	171, 204, 702
MslI	CAYNNNNRTG	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	715
NdeII	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	37, 274, 308, 503, 554
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	513
PagI	TCATGA	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	4 cut(s)	78, 282, 325, 686
PpsI	GAGTC	4 cut(s)	78, 282, 325, 686
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	396, 468
RsaNI	GTAC	2 cut(s)	395, 467
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	171, 204, 702
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	8 cut(s)	4, 55, 267, 301, 372, 390, 412, 445
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	4 cut(s)	79, 283, 325, 687
SfcI	CTRYAG	1 cut(s)	645
SfuI	TTCGAA	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	139, 172, 232
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	4 cut(s)	98, 210, 726, 748
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	5 cut(s)	28, 263, 334, 513, 681
TasI	AATT	3 cut(s)	139, 172, 232
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	171, 204, 702
Tru9I	TTAA	3 cut(s)	171, 204, 702
TscAI	CASTG	1 cut(s)	480
TseI	GCWGC	1 cut(s)	213
TspDTI	ATGAA	7 cut(s)	50, 71, 477, 519, 558, 570, 678
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	189
XspI	CTAG	4 cut(s)	98, 210, 726, 748
ZraI	GACGTC	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.