Rh7BG106900

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005407
Physical Location & Seq
Reverse (-)
8031920 .. 8033054
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG106900.1

Sequence Viewer

Length: 513 bp
ATGAAGGGTTTTTTCTTTGGTTTTGTGCCAATGATGAGCTCAATCTTCTTGAGCTCCAAGTTTGTGTTCATACTAGGCAACCTCATTGTTGTTGCCCTTGTAGGAGAATCCAAAATCTTTTCCACAGTCTCTTCTCCACCTAATATTCATGTTGAATATGAGGAAAGTATCAAAAGGTGCCAAAGGTTTCAGCCCTCTTCAACCTACAAAGAGAAGGAACCTGAAGAGGTGAACTCTCTTGTTGAAGAAAGGGTAATACTGAAGAACTCTCTTATTGAAGAAAGGGTACTGAAGATGAGCTCTTATGGAGATGGAGATCAAGCTATAGAAGGAAAAGGGTGTAAGGAACAAAGTAAGGAATCAGTAGTGGAGGAGGTGAAAGAGGATATAGATGACGAAGATGAAGAGCTCAGTGTGCCTGAGGACCAGCAATTCAACAAAAGAGCTGATGATTTCATTGCAAGGGTCAATGAAAGAAGGAGATATGAACTGCTACTTTGTAATGGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

170

Amino Acids

19.5

Weight (kDa)

4.71

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AcuI CTGAAG 3 cut(s) 243, 281, 311
AfaI GTAC 1 cut(s) 288
AgsI TTSAA 5 cut(s) 155, 201, 245, 278, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 6 cut(s) 39, 54, 300, 323, 409, 446
AluI AGCT 6 cut(s) 39, 54, 300, 323, 409, 446
Alw21I GWGCWC 4 cut(s) 41, 56, 302, 411
Alw26I GTCTC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 241, 388
AvaII GGWCC 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 420
BanI GGYRCC 1 cut(s) 177
BanII GRGCYC 4 cut(s) 41, 56, 302, 411
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
Bbv12I GWGCWC 4 cut(s) 41, 56, 302, 411
BccI CCATC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 179, 219
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpuEI CTTGAG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 315
Bse21I CCTNAGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 315
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 411, 424
BseRI GAGGAG 1 cut(s) 386
BshNI GGYRCC 1 cut(s) 177
BsiHKAI GWGCWC 4 cut(s) 41, 56, 302, 411
BsmAI GTCTC 1 cut(s) 133
Bsp1286I GDGCHC 4 cut(s) 41, 56, 302, 411
Bsp143I GATC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 412, 423
BspLI GGNNCC 2 cut(s) 179, 219
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 456
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 4 cut(s) 136, 202, 219, 399
BstDEI CTNAG 2 cut(s) 410, 420
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 149
CviJI RGCY 7 cut(s) 39, 54, 193, 300, 323, 409, 446
CviKI_1 RGCY 7 cut(s) 39, 54, 193, 300, 323, 409, 446
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 410, 420
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 4 cut(s) 136, 202, 219, 399
EarI CTCTTC 4 cut(s) 136, 202, 219, 399
Ecl136II GAGCTC 4 cut(s) 39, 54, 300, 409
Eco24I GRGCYC 4 cut(s) 41, 56, 302, 411
Eco47I GGWCC 1 cut(s) 424
Eco53kI GAGCTC 4 cut(s) 39, 54, 300, 409
Eco57I CTGAAG 3 cut(s) 243, 281, 311
Eco81I CCTNAGG 1 cut(s) 420
EcoICRI GAGCTC 4 cut(s) 39, 54, 300, 409
EcoT38I GRGCYC 4 cut(s) 41, 56, 302, 411
FaeI CATG 1 cut(s) 152
FaiI YATR 7 cut(s) 71, 150, 159, 306, 326, 389, 486
FatI CATG 1 cut(s) 148
FriOI GRGCYC 4 cut(s) 41, 56, 302, 411
FspBI CTAG 1 cut(s) 74
Hin1II CATG 1 cut(s) 152
HinfI GANTC 2 cut(s) 107, 359
HphI GGTGA 2 cut(s) 241, 388
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 208, 323, 471
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 2 cut(s) 410, 420
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 316
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 234, 432, 440
MaeI CTAG 1 cut(s) 74
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MhlI GDGCHC 4 cut(s) 41, 56, 302, 411
MluCI AATT 1 cut(s) 431
MnlI CCTC 8 cut(s) 92, 154, 205, 220, 364, 367, 376, 415
MwoI GCNNNNNNNGC 1 cut(s) 415
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 179, 219
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 107, 359
Psp124BI GAGCTC 4 cut(s) 41, 56, 302, 411
PspN4I GGNNCC 2 cut(s) 179, 219
PspPI GGNCC 1 cut(s) 424
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SacI GAGCTC 4 cut(s) 41, 56, 302, 411
SapI GCTCTTC 1 cut(s) 399
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 424
SduI GDGCHC 4 cut(s) 41, 56, 302, 411
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 431
SspI AATATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 4 cut(s) 41, 56, 302, 411
TaaI ACNGT 1 cut(s) 127
TasI AATT 1 cut(s) 431
TfiI GAWTC 2 cut(s) 107, 359
TscAI CASTG 1 cut(s) 418
TspDTI ATGAA 7 cut(s) 17, 58, 137, 417, 445, 486, 501
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 424
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.