AT5G57510

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007226
Physical Location & Seq
Reverse (-)
23288885 .. 23289635
751 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57510.1

Sequence Viewer

Length: 393 bp
ATGACAAAGAGCAAAGACGGTTCGCTACTAAACCGGTTGAGACAAGCAGTGAATAAAGTAAAATTCGTGTTAAGTTTCAAGATAAATAGCCTCTGGGGTCTCGTACCGATGCTTGGTTCTTCCTCTTCTTCTTCGTCTCTTCGGTTAAGTTTCAACGATAGACCTGGTTTAACAGCGGCTTTTACAGAGAATGAACCGGACTCAACCGGTTCTTCAAGGGGAGCGTTGTATAGAACCGTGAGTTATGATCAATCTTCAGATGAAGACATTGACAACAAAGCTGAGATGTTCATAGCTAATTTCTACAGACAGCTTAAGATTGAGAGACAAATCTCTTTGGAACTTAAATATTGCCAGGGTAATAATCAGAGTTTCAACTACAGATCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

9.33

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 87 - 119 8.1e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 314
AgeI ACCGGT 2 cut(s) 33, 206
AgsI TTSAA 4 cut(s) 79, 154, 216, 376
AjnI CCWGG 2 cut(s) 163, 354
AluBI AGCT 3 cut(s) 281, 296, 313
AluI AGCT 3 cut(s) 281, 296, 313
Alw26I GTCTC 4 cut(s) 34, 104, 141, 319
ApoI RAATTY 1 cut(s) 62
AsiGI ACCGGT 2 cut(s) 33, 206
BbsI GAAGAC 1 cut(s) 270
BciT130I CCWGG 2 cut(s) 165, 356
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 4 cut(s) 34, 104, 141, 319
BfmI CTRYAG 2 cut(s) 304, 379
BfrI CTTAAG 1 cut(s) 314
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 165, 356
BmrFI CCNGG 2 cut(s) 165, 356
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 3 cut(s) 33, 196, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 2 cut(s) 33, 206
BseBI CCWGG 2 cut(s) 165, 356
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 273
BshTI ACCGGT 2 cut(s) 33, 206
BsiSI CCGG 3 cut(s) 34, 197, 207
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 4 cut(s) 34, 104, 141, 319
BsmBI CGTCTC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 247, 383
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 274
BspTI CTTAAG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 33, 206
BssAI RCCGGY 2 cut(s) 33, 206
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 247, 383
Bst2UI CCWGG 2 cut(s) 165, 356
Bst4CI ACNGT 2 cut(s) 20, 238
Bst6I CTCTTC 2 cut(s) 130, 144
BstAFI CTTAAG 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 282
BstKTI GATC 2 cut(s) 250, 386
BstMAI GTCTC 4 cut(s) 34, 104, 141, 319
BstMBI GATC 2 cut(s) 247, 383
BstNI CCWGG 2 cut(s) 165, 356
BstSCI CCNGG 2 cut(s) 163, 354
BstSFI CTRYAG 2 cut(s) 304, 379
BstV2I GAAGAC 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cfr10I RCCGGY 2 cut(s) 33, 206
CsiI ACCWGGT 1 cut(s) 163
Csp6I GTAC 1 cut(s) 104
CspAI ACCGGT 2 cut(s) 33, 206
CviJI RGCY 5 cut(s) 90, 179, 281, 296, 313
CviKI_1 RGCY 5 cut(s) 90, 179, 281, 296, 313
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 249, 385
DpnII GATC 2 cut(s) 247, 383
Eam1104I CTCTTC 2 cut(s) 130, 144
EarI CTCTTC 2 cut(s) 130, 144
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 163, 354
Esp3I CGTCTC 1 cut(s) 141
FaiI YATR 3 cut(s) 231, 246, 293
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HapII CCGG 3 cut(s) 34, 197, 207
HinfI GANTC 1 cut(s) 200
HpaII CCGG 3 cut(s) 34, 197, 207
Hpy188I TCNGA 2 cut(s) 259, 369
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 20, 238
HpyF3I CTNAG 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 383
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 8 cut(s) 47, 79, 150, 177, 210, 220, 341, 368
LweI GCATC 1 cut(s) 99
MabI ACCWGGT 1 cut(s) 163
MalI GATC 2 cut(s) 249, 385
MboI GATC 2 cut(s) 247, 383
MboII GAAGA 8 cut(s) 111, 117, 120, 123, 131, 204, 246, 275
MluCI AATT 2 cut(s) 62, 298
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 2 cut(s) 101, 133
MseI TTAA 6 cut(s) 71, 146, 170, 315, 345, 391
MspA1I CMGCKG 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 3 cut(s) 34, 197, 207
MspR9I CCNGG 2 cut(s) 165, 356
MvaI CCWGG 2 cut(s) 165, 356
NdeII GATC 2 cut(s) 247, 383
PinAI ACCGGT 2 cut(s) 33, 206
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 163, 354
PspGI CCWGG 2 cut(s) 163, 354
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 6 cut(s) 71, 146, 170, 315, 345, 391
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 247, 383
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 165, 356
SetI ASST 4 cut(s) 166, 283, 298, 315
SexAI ACCWGGT 1 cut(s) 163
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 2 cut(s) 304, 379
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 62, 298
SsiI CCGC 1 cut(s) 176
SspI AATATT 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 163, 354
TaaI ACNGT 2 cut(s) 20, 238
TasI AATT 2 cut(s) 62, 298
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 6 cut(s) 71, 146, 170, 315, 345, 391
Tru9I TTAA 6 cut(s) 71, 146, 170, 315, 345, 391
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 3 cut(s) 207, 276, 280
TspRI CASTG 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 314
XapI RAATTY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.