Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007226

Physical Location & Seq

Genomic Coordinates Reverse (-)

24876202 .. 24876727

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAACCGCTGGCGAATCTCTTCCATGCTCAGCCGATCTTCTTCCACTGTGCACCGCATAAGGAGCTTCAACGACCGGCCAGCTGGACTGACCGCAGCGTGTGACTCCGATGAGACCGCAGGCTCGCAGGAGGATTTCGGATCTTCTAGGGGATCACCTCATCTACAGAGGACCATAAGCTACCCGTCGGATCAAGATGATATCGATCAGAGAGCAGAGATTTTCTATTTTTTGTGGCTTTATTTGATTGCCCATATGGAGATACAGTATATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

92

Amino Acids

10.63

Weight (kDa)

5.23

Isoelectric Point (pI)

83.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57510
fragaria_vesca	FvH4_3g45900 FvH4_4g09360
malus_domestica	MD12G1161200.v1.1 MD13G1257600.v1.1
prunus_persica	Prupe.1G087800_v2.0.a1
pyrus_communis	pycom13g22090 pycom16g22060
rosa_chinensis	RchiOBHm_Chr4g0402691 RchiOBHm_Chr4g0402701
rosa_laevigata	RLG00000009053
rosa_multiflora	Rmu_sc0009850.1_g000001 Rmu_sc0009850.1_g000002 Rmu_sc0009851.1_g000001 Rmu_sc0009851.1_g000002
rosa_roxburghii	Rroxscaffold_5G00347430
rosa_rugosa	Rorug04G0037700
rosa_samantha	Rh4AG115300 Rh4BG107800 Rh4CG122100 Rh4CG122200 Rh4DG107600 Rh4DG107800
rosa_wichuraiana	Rw4G009190 Rw4G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	7, 55, 93, 117
AclWI	GGATC	3 cut(s)	148, 160, 198
AcoI	YGGCCR	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	3 cut(s)	66, 83, 180
AluI	AGCT	3 cut(s)	66, 83, 180
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	148, 160, 198
AoxI	GGCC	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	96
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	107
BsaXI	ACNNNNNCTCC	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	35, 140, 152, 190, 205
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	4 cut(s)	7, 55, 93, 117
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	204
BspPI	GGATC	3 cut(s)	148, 160, 198
BspTNI	GGTCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	5 cut(s)	35, 140, 152, 190, 205
Bst4CI	ACNGT	2 cut(s)	49, 267
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	4 cut(s)	11, 81, 121, 125
BstDEI	CTNAG	1 cut(s)	29
BstKTI	GATC	5 cut(s)	38, 143, 155, 193, 208
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	5 cut(s)	35, 140, 152, 190, 205
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	4 cut(s)	11, 81, 121, 125
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	204
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	7 cut(s)	33, 66, 79, 83, 123, 180, 238
CviKI_1	RGCY	7 cut(s)	33, 66, 79, 83, 123, 180, 238
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	5 cut(s)	37, 142, 154, 192, 207
DpnII	GATC	5 cut(s)	35, 140, 152, 190, 205
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	202
FaeI	CATG	1 cut(s)	28
FaiI	YATR	7 cut(s)	26, 59, 176, 255, 257, 270, 272
FatI	CATG	1 cut(s)	24
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	76
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	2 cut(s)	15, 104
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	109, 140, 190, 210
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	49, 267
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	35, 140, 152, 190, 205
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	69, 89, 93, 105, 113
Lsp1109I	GCAGC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	5 cut(s)	37, 142, 154, 192, 207
MboI	GATC	5 cut(s)	35, 140, 152, 190, 205
MboII	GAAGA	4 cut(s)	12, 30, 33, 135
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	3 cut(s)	124, 162, 168
MroXI	GAANNNNTTC	1 cut(s)	19
MspA1I	CMGCKG	2 cut(s)	9, 83
MspI	CCGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	5 cut(s)	35, 140, 152, 190, 205
NlaIII	CATG	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	83
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	5 cut(s)	35, 140, 152, 190, 205
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	4 cut(s)	68, 85, 160, 182
SfcI	CTRYAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	171
SsiI	CCGC	4 cut(s)	7, 55, 93, 117
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	49, 267
TaqI	TCGA	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	52
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.