Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009850.1

Orthogroup ID

OG0007226

Physical Location & Seq

Genomic Coordinates Forward (+)

10998 .. 11396

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009850.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgagcaacaatagctggtctttactcagccgcctaaggcgggctgtgaagaaggtaagcttccttctaaatctcaacattaaccgctggcgaatctcttccatgctcagccgttcttcttccactgtgcaccgcataaggagcttcaacgaccggccagctggactgaccgcagcgtgtgactccaatgagaccgcaggctcgcaggaggatttcggatcttctaggggatcacctcatctacagaggaccataagctacccgtcggatcaagatgatatcgatcagagagcagagatgttcatagctaatttccggcgccaacttcagattgaaagacaggtctctttggagctgagatactgcagaggaaatagttttgaaatggcatctccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

132

Amino Acids

15.13

Weight (kDa)

10.33

Isoelectric Point (pI)

79.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57510
fragaria_vesca	FvH4_3g45900 FvH4_4g09360
malus_domestica	MD12G1161200.v1.1 MD13G1257600.v1.1
prunus_persica	Prupe.1G087800_v2.0.a1
pyrus_communis	pycom13g22090 pycom16g22060
rosa_chinensis	RchiOBHm_Chr4g0402691 RchiOBHm_Chr4g0402701
rosa_laevigata	RLG00000009053
rosa_multiflora	Rmu_sc0009850.1_g000001 Rmu_sc0009850.1_g000002 Rmu_sc0009851.1_g000001 Rmu_sc0009851.1_g000002
rosa_roxburghii	Rroxscaffold_5G00347430
rosa_rugosa	Rorug04G0037700
rosa_samantha	Rh4AG115300 Rh4BG107800 Rh4CG122100 Rh4CG122200 Rh4DG107600 Rh4DG107800
rosa_wichuraiana	Rw4G009190 Rw4G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AciI	CCGC	6 cut(s)	31, 40, 85, 133, 171, 195
AclWI	GGATC	3 cut(s)	226, 238, 276
AcoI	YGGCCR	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	148, 335, 383
AluBI	AGCT	7 cut(s)	15, 60, 144, 161, 258, 308, 355
AluI	AGCT	7 cut(s)	15, 60, 144, 161, 258, 308, 355
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	185, 349
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	226, 238, 276
AoxI	GGCC	1 cut(s)	155
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	185, 349
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	242, 364
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	2 cut(s)	31, 174
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	2 cut(s)	32, 175
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	2 cut(s)	185, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	153
Bse21I	CCTNAGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	282
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	40, 121, 347
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	154, 316
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	185, 349
BsnI	GGCC	1 cut(s)	157
Bso31I	GGTCTC	2 cut(s)	185, 349
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	218, 230, 268, 283
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	6 cut(s)	31, 40, 85, 133, 171, 195
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	39, 120, 348
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	368
BspPI	GGATC	3 cut(s)	226, 238, 276
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	2 cut(s)	185, 349
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssMI	GATC	4 cut(s)	218, 230, 268, 283
BssNI	GRCGYC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	319
BstC8I	GCNNGC	5 cut(s)	42, 89, 159, 199, 203
BstDEI	CTNAG	4 cut(s)	26, 35, 107, 356
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	221, 233, 271, 286
BstMAI	GTCTC	2 cut(s)	185, 349
BstMBI	GATC	4 cut(s)	218, 230, 268, 283
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 141
BstSFI	CTRYAG	2 cut(s)	242, 364
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	5 cut(s)	42, 89, 159, 199, 203
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	282
CviAII	CATG	1 cut(s)	103
DdeI	CTNAG	4 cut(s)	26, 35, 107, 356
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	4 cut(s)	220, 232, 270, 285
DpnII	GATC	4 cut(s)	218, 230, 268, 283
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco31I	GGTCTC	2 cut(s)	185, 349
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	104, 137, 254, 305
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	31, 174
Fsp4HI	GCNGC	2 cut(s)	31, 174
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	2 cut(s)	31, 174
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	2 cut(s)	154, 316
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	2 cut(s)	93, 182
HpaII	CCGG	2 cut(s)	154, 316
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	218, 268, 288, 330
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	46, 74
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	130, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 141
HpyF3I	CTNAG	4 cut(s)	26, 35, 107, 356
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	218, 230, 268, 283
LmnI	GCTCC	2 cut(s)	141, 352
LpnPI	CCDG	8 cut(s)	73, 147, 167, 171, 183, 191, 326, 329
Lsp1109I	GCAGC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	220, 232, 270, 285
MboI	GATC	4 cut(s)	218, 230, 268, 283
MboII	GAAGA	5 cut(s)	61, 90, 108, 111, 213
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	310
Mly113I	GGCGCC	1 cut(s)	319
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	202, 240, 246, 362
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	87, 161
MspI	CCGG	2 cut(s)	154, 316
MwoI	GCNNNNNNNGC	2 cut(s)	12, 141
NarI	GGCGCC	1 cut(s)	319
NdeII	GATC	4 cut(s)	218, 230, 268, 283
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	32, 175
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	31, 174
Sau3AI	GATC	4 cut(s)	218, 230, 268, 283
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	132
SfcI	CTRYAG	2 cut(s)	242, 364
SfoI	GGCGCC	1 cut(s)	320
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	6 cut(s)	31, 40, 85, 133, 171, 195
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	310
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.