Rh4BG107800

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007226
Physical Location & Seq
Reverse (-)
18344219 .. 18345109
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG107800.1

Sequence Viewer

Length: 405 bp
ATGGACATGAGCAACAATAGCTGGTCTTTACTCAGCCGCCTAAGGAGGGCTGTGAAGAAGGTAAGCTTCCTTCTAAATCTCAACATGAACCGCTGGCGAATCGCTTCCATGCTCAGCCGTTCTTCTTCCACTGTGCACCGCATAAGGAGCTTCAACGACCGGCCAGCTGGACTGACCGCAGCGAATGACTCCGATGAGACCGCGGGCTCGGAGGAGGATTCCGGGTCTTCTAGGGGATCACGTCATCTACAGAGGACCATAAGCTACCCGTCGGATCAAGATGATATCGATCAGAGAGCAGAGATGTTCATAGCTAATTTCCGGCGCCAACTTCAGATTGAAAGACAGGTCTCTTTGCAGCTGAGATACTGCAGAGGAAATAGTTTTGAAATGGCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

134

Amino Acids

15.39

Weight (kDa)

10.31

Isoelectric Point (pI)

73.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 93 - 124 1.1e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccII CGCG 1 cut(s) 203
AciI CCGC 6 cut(s) 37, 91, 139, 177, 201, 203
AclWI GGATC 2 cut(s) 244, 282
AcoI YGGCCR 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 154, 341, 389
AjiI CACGTC 1 cut(s) 242
AluBI AGCT 7 cut(s) 21, 66, 150, 167, 264, 314, 361
AluI AGCT 7 cut(s) 21, 66, 150, 167, 264, 314, 361
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 191, 355
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 2 cut(s) 244, 282
AoxI GGCC 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 179, 358
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 255
AxyI CCTNAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 324
BanII GRGCYC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 191, 370
BceAI ACGGC 1 cut(s) 102
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 191, 355
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 2 cut(s) 248, 370
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 3 cut(s) 37, 180, 359
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 3 cut(s) 38, 181, 360
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 255
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 191, 355
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 3 cut(s) 46, 127, 353
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 191, 370
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 324
BshVI ATCGAT 1 cut(s) 288
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 160, 222, 322
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 191, 355
BsnI GGCC 1 cut(s) 163
Bso31I GGTCTC 2 cut(s) 191, 355
Bsp1286I GDGCHC 2 cut(s) 138, 209
Bsp143I GATC 3 cut(s) 236, 274, 289
Bsp1720I GCTNAGC 1 cut(s) 113
BspACI CCGC 6 cut(s) 37, 91, 139, 177, 201, 203
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 3 cut(s) 45, 126, 354
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 326
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 2 cut(s) 244, 282
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 2 cut(s) 191, 355
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 236, 274, 289
BssNI GRCGYC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 95, 165, 205
BstDEI CTNAG 4 cut(s) 32, 41, 113, 362
BstDSI CCRYGG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 239, 277, 292
BstMAI GTCTC 2 cut(s) 191, 355
BstMBI GATC 3 cut(s) 236, 274, 289
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 18, 147
BstSCI CCNGG 1 cut(s) 221
BstSFI CTRYAG 2 cut(s) 248, 370
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 191, 370
BstV2I GAAGAC 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 163
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 95, 165, 205
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 255
Cfr42I CCGCGG 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 288
CviAII CATG 3 cut(s) 7, 85, 109
DdeI CTNAG 4 cut(s) 32, 41, 113, 362
DinI GGCGCC 1 cut(s) 326
DpnI GATC 3 cut(s) 238, 276, 291
DpnII GATC 3 cut(s) 236, 274, 289
EaeI YGGCCR 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 2 cut(s) 191, 355
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 41
EcoRV GATATC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 209
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
FaeI CATG 3 cut(s) 10, 88, 112
FaiI YATR 6 cut(s) 8, 86, 110, 143, 260, 311
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 3 cut(s) 6, 84, 108
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 37, 180, 359
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 37, 180, 359
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 37, 180, 359
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 163
HapII CCGG 3 cut(s) 160, 222, 322
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 3 cut(s) 10, 88, 112
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 3 cut(s) 99, 188, 218
HpaII CCGG 3 cut(s) 160, 222, 322
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 5 cut(s) 193, 211, 274, 294, 336
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 52, 80
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 136, 358, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 147
HpyF3I CTNAG 4 cut(s) 32, 41, 113, 362
HpySE526I ACGT 1 cut(s) 241
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 3 cut(s) 10, 88, 112
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 3 cut(s) 236, 274, 289
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 8 cut(s) 7, 79, 153, 173, 177, 235, 332, 335
Lsp1109I GCAGC 2 cut(s) 191, 370
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 241
MalI GATC 3 cut(s) 238, 276, 291
MboI GATC 3 cut(s) 236, 274, 289
MboII GAAGA 4 cut(s) 67, 114, 117, 219
MhlI GDGCHC 2 cut(s) 138, 209
MluCI AATT 1 cut(s) 316
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 5 cut(s) 39, 205, 208, 246, 368
MroXI GAANNNNTTC 1 cut(s) 103
MspA1I CMGCKG 4 cut(s) 93, 167, 203, 361
MspI CCGG 3 cut(s) 160, 222, 322
MspR9I CCNGG 1 cut(s) 223
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 18, 147
NarI GGCGCC 1 cut(s) 325
NciI CCSGG 1 cut(s) 223
NdeII GATC 3 cut(s) 236, 274, 289
NlaIII CATG 3 cut(s) 10, 88, 112
NlaIV GGNNCC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 99, 218
PkrI GCNGC 3 cut(s) 38, 181, 360
PleI GAGTC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 255
PstI CTGCAG 1 cut(s) 374
PvuII CAGCTG 2 cut(s) 167, 361
SacII CCGCGG 1 cut(s) 204
SatI GCNGC 3 cut(s) 37, 180, 359
Sau3AI GATC 3 cut(s) 236, 274, 289
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 2 cut(s) 138, 209
SfcI CTRYAG 2 cut(s) 248, 370
SfoI GGCGCC 1 cut(s) 326
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SinI GGWCC 1 cut(s) 255
Sse9I AATT 1 cut(s) 316
SsiI CCGC 6 cut(s) 37, 91, 139, 177, 201, 203
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 316
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 99, 218
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 179, 358
TspDTI ATGAA 2 cut(s) 101, 298
TspRI CASTG 1 cut(s) 136
VneI GTGCAC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.