Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007226

Physical Location & Seq

Genomic Coordinates Forward (+)

5622000 .. 5623385

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGATATTTTCTACAACTCTAAATGGTTAGTGGGCAATGGTCGATCAATTGATTTTTGGCATGGTAATTGGCTTAATGGTTCAGTTGTTGATAGATTGGGTATTGTGCATCCGCTTGGCAAATTATTATGTGCCAAAGTTTCTGATTTCATCAGAGATGGCTCTTGGTATTGCTCTACAAATTTGATTGCTGATCTTTCTGCACTTTGGTCAGAAATTTCAGCTGTTAGACTTCCTTATTCAGACATGGAGGATAAGCTGGTGTGGTTGGATTCTTCTGATGGGAGTTTATCTTTATCTATAGCCTATGAGTTCAAGAGGAGTAAACAGGCAATTGTTCTTTGGGATAGATGGGTTTGGCGTCAATGCTTTCGTCCTCGAAACTCTGTTACTCTATGGAAATTTCTTCATGGTAAGCTTTTAACAGATGATCTCTTACTTCAGCGAGGCTTTTCTTTTGCTTCTATGTGCTCTCTCTGTCATGCATCTGCTGAGACTGCCCACCACCTTTTTTTTGAGTGCTCTTTCTCTATGAAGGTATGGTCTGCAGTTTTATCTTGGTTTAAAGTCAGTATTCATTTCCTGGATATATATGATTTCTTCTCTTACCCACTGCAACATGGTTTTGGTACTCAATTGCAATTGCTATGGTGGGGAATGATGGGAGCTGGCTTCTACTCTCTTTGGGAGGCTAGAAATTCTATCCGTTTTGATGAGCGTCACTTAACTACTGATTATTTGATTCGCTCTATCAAGCAGCAAATTCGCGAGGTTGATTCTTGGGGTTTAGGAATTATGCGTAACTCAGTAGATGAGCTTTGTATTTTCAGTGCTCTTAGAATCAGCGGTAGAGCCTCAAGATCACATCAAATTCGTGAGGTAAATTGGCATGCTCCTTGTGCTTTTCAATTAAAGGTTAATACAGATGGTGCTGCTCGTGGGACGCCTGGACTCGCGGGCTATGGAGGTATTTTTCGTGATCACTTGGGTAATTGTATGGGTTGTTTTGCTGGTTCCTTGGGTATTGCTACTGCCCTAGAAGCAGAGCTTCAAGCCATTATTCATGCAGTTTCAATAGCATCAGGAAAAGGATGGACTTCTCTCTGGATTGAGTGTGATTCAGCGGTAGCAATTCACTTTCTTGCCAATAAAAATTACTCAGTCCCTTGGCGTCTAAGTGTTGATTGGGTCAATTGTTGTACCATTCTCTCCTCTATGCAGATTCAGTTTTCACATATTTATCGAGAAGGGAATCAAGTGGCTGATTGCTTAGCTAACTATGGGGTGGATCATGAGGGGCATTATTGGTGGGACTCTTGCCCTCCTTGTGCATCAGCTGCCTTTGTTCACAATCTGCAAGGGTTACCGAATTTCCGTATTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

461

Amino Acids

52.34

Weight (kDa)

6.8

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	100 - 181	8e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	307 - 427	1.8e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57510
fragaria_vesca	FvH4_3g45900 FvH4_4g09360
malus_domestica	MD12G1161200.v1.1 MD13G1257600.v1.1
prunus_persica	Prupe.1G087800_v2.0.a1
pyrus_communis	pycom13g22090 pycom16g22060
rosa_chinensis	RchiOBHm_Chr4g0402691 RchiOBHm_Chr4g0402701
rosa_laevigata	RLG00000009053
rosa_multiflora	Rmu_sc0009850.1_g000001 Rmu_sc0009850.1_g000002 Rmu_sc0009851.1_g000001 Rmu_sc0009851.1_g000002
rosa_roxburghii	Rroxscaffold_5G00347430
rosa_rugosa	Rorug04G0037700
rosa_samantha	Rh4AG115300 Rh4BG107800 Rh4CG122100 Rh4CG122200 Rh4DG107600 Rh4DG107800
rosa_wichuraiana	Rw4G009190 Rw4G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	768, 956
AciI	CCGC	4 cut(s)	113, 846, 956, 1124
AclWI	GGATC	1 cut(s)	1296
AcsI	RAATTY	7 cut(s)	181, 216, 401, 697, 762, 870, 1369
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	3 cut(s)	361, 944, 1171
AfaI	GTAC	2 cut(s)	631, 1201
AgsI	TTSAA	4 cut(s)	316, 908, 1052, 1074
AjnI	CCWGG	2 cut(s)	582, 946
AluBI	AGCT	9 cut(s)	224, 259, 418, 668, 817, 1048, 1274, 1337, 1383
AluI	AGCT	9 cut(s)	224, 259, 418, 668, 817, 1048, 1274, 1337, 1383
Alw21I	GWGCWC	3 cut(s)	473, 524, 835
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	1296
ApeKI	GCWGC	3 cut(s)	757, 932, 1337
ApoI	RAATTY	7 cut(s)	181, 216, 401, 697, 762, 870, 1369
BauI	CACGAG	1 cut(s)	936
Bbv12I	GWGCWC	3 cut(s)	473, 524, 835
BbvI	GCAGC	3 cut(s)	769, 919, 1324
BccI	CCATC	6 cut(s)	152, 275, 345, 655, 920, 1086
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	2 cut(s)	584, 948
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	2 cut(s)	693, 1037
BfmI	CTRYAG	2 cut(s)	300, 546
BisI	GCNGC	3 cut(s)	758, 933, 1338
BlpI	GCTNAGC	1 cut(s)	1270
BlsI	GCNGC	3 cut(s)	759, 934, 1339
Bme1390I	CCNGG	2 cut(s)	584, 948
BmiI	GGNNCC	1 cut(s)	1015
BmrFI	CCNGG	2 cut(s)	584, 948
BmsI	GCATC	4 cut(s)	118, 494, 1088, 1340
Bpu1102I	GCTNAGC	1 cut(s)	1270
BpuEI	CTTGAG	1 cut(s)	841
BsaHI	GRCGYC	3 cut(s)	361, 944, 1171
BsaJI	CCNNGG	2 cut(s)	1017, 1166
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	584, 948
BseDI	CCNNGG	2 cut(s)	1017, 1166
BseGI	GGATG	2 cut(s)	109, 1097
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	3 cut(s)	483, 819, 1173
BseRI	GAGGAG	2 cut(s)	334, 1201
BseXI	GCAGC	3 cut(s)	769, 919, 1324
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	2 cut(s)	768, 956
BsiHKAI	GWGCWC	3 cut(s)	473, 524, 835
BslFI	GGGAC	3 cut(s)	955, 1148, 1325
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	3 cut(s)	955, 1148, 1325
Bsp1286I	GDGCHC	3 cut(s)	473, 524, 835
Bsp143I	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
Bsp1720I	GCTNAGC	1 cut(s)	1270
Bsp68I	TCGCGA	1 cut(s)	768
BspACI	CCGC	4 cut(s)	113, 846, 956, 1124
BspCNI	CTCAG	3 cut(s)	484, 818, 1172
BspFNI	CGCG	2 cut(s)	768, 956
BspHI	TCATGA	1 cut(s)	1291
BspLI	GGNNCC	1 cut(s)	1015
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	1296
BsrDI	GCAATG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	1017, 1166
BssMI	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
BssNI	GRCGYC	3 cut(s)	361, 944, 1171
BssSI	CACGAG	1 cut(s)	936
BssT1I	CCWWGG	2 cut(s)	1017, 1166
Bst2BI	CACGAG	1 cut(s)	936
Bst2UI	CCWGG	2 cut(s)	584, 948
BstACI	GRCGYC	3 cut(s)	361, 944, 1171
BstAPI	GCANNNNNTGC	1 cut(s)	1337
BstC8I	GCNNGC	3 cut(s)	670, 891, 958
BstDEI	CTNAG	6 cut(s)	492, 805, 836, 1159, 1175, 1270
BstEII	GGTNACC	1 cut(s)	1362
BstF5I	GGATG	2 cut(s)	109, 1097
BstFNI	CGCG	2 cut(s)	768, 956
BstKTI	GATC	6 cut(s)	47, 196, 433, 863, 982, 1291
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
BstMWI	GCNNNNNNNGC	4 cut(s)	497, 899, 1040, 1337
BstNI	CCWGG	2 cut(s)	584, 948
BstNSI	RCATGY	1 cut(s)	893
BstPI	GGTNACC	1 cut(s)	1362
BstSCI	CCNGG	2 cut(s)	582, 946
BstSFI	CTRYAG	2 cut(s)	300, 546
BstUI	CGCG	2 cut(s)	768, 956
BstV1I	GCAGC	3 cut(s)	769, 919, 1324
BtsCI	GGATG	2 cut(s)	109, 1097
BtsI	GCAGTG	1 cut(s)	611
BtsIMutI	CAGTG	2 cut(s)	611, 835
BtuMI	TCGCGA	1 cut(s)	768
Cac8I	GCNNGC	3 cut(s)	670, 891, 958
CciI	TCATGA	1 cut(s)	1291
CseI	GACGC	4 cut(s)	350, 707, 952, 1160
Csp6I	GTAC	2 cut(s)	630, 1200
CviAII	CATG	8 cut(s)	62, 247, 410, 482, 620, 890, 1064, 1292
CviQI	GTAC	2 cut(s)	630, 1200
DdeI	CTNAG	6 cut(s)	492, 805, 836, 1159, 1175, 1270
DpnI	GATC	6 cut(s)	46, 195, 432, 862, 981, 1290
DpnII	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
DraI	TTTAAA	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	1017, 1166
Eco57I	CTGAAG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	1362
EcoO65I	GGTNACC	1 cut(s)	1362
EcoRII	CCWGG	2 cut(s)	582, 946
EcoT14I	CCWWGG	2 cut(s)	1017, 1166
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	1017, 1166
FaeI	CATG	8 cut(s)	65, 250, 413, 485, 623, 893, 1067, 1295
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FaqI	GGGAC	3 cut(s)	955, 1148, 1325
FatI	CATG	8 cut(s)	61, 246, 409, 481, 619, 889, 1063, 1291
FauI	CCCGC	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	3 cut(s)	758, 933, 1338
FokI	GGATG	2 cut(s)	96, 1104
Fsp4HI	GCNGC	3 cut(s)	758, 933, 1338
FspBI	CTAG	2 cut(s)	693, 1037
GluI	GCNGC	3 cut(s)	758, 933, 1338
HgaI	GACGC	4 cut(s)	350, 707, 952, 1160
Hin1I	GRCGYC	3 cut(s)	361, 944, 1171
Hin1II	CATG	8 cut(s)	65, 250, 413, 485, 623, 893, 1067, 1295
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	9 cut(s)	272, 742, 776, 840, 951, 1118, 1222, 1252, 1313
Hpy166II	GTNNAC	2 cut(s)	326, 1348
Hpy188I	TCNGA	5 cut(s)	145, 155, 214, 244, 280
Hpy188III	TCNNGA	9 cut(s)	316, 767, 858, 875, 977, 1083, 1105, 1244, 1292
Hpy8I	GTNNAC	2 cut(s)	326, 1348
HpyAV	CCTTC	2 cut(s)	529, 1241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	497, 899, 1040, 1337
HpyF3I	CTNAG	6 cut(s)	492, 805, 836, 1159, 1175, 1270
Hsp92I	GRCGYC	3 cut(s)	361, 944, 1171
Hsp92II	CATG	8 cut(s)	65, 250, 413, 485, 623, 893, 1067, 1295
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
LmnI	GCTCC	2 cut(s)	665, 898
Lsp1109I	GCAGC	3 cut(s)	769, 919, 1324
LweI	GCATC	4 cut(s)	118, 494, 1088, 1340
MaeI	CTAG	2 cut(s)	693, 1037
MaeIII	GTNAC	4 cut(s)	388, 719, 800, 1362
MalI	GATC	6 cut(s)	46, 195, 432, 862, 981, 1290
MboI	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
MboII	GAAGA	3 cut(s)	267, 398, 592
MfeI	CAATTG	5 cut(s)	48, 333, 635, 641, 1192
MhlI	GDGCHC	3 cut(s)	473, 524, 835
MlyI	GAGTC	2 cut(s)	945, 1307
MmeI	TCCRAC	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	6 cut(s)	75, 422, 564, 725, 911, 918
MspA1I	CMGCKG	4 cut(s)	224, 846, 1124, 1337
MspR9I	CCNGG	2 cut(s)	584, 948
MunI	CAATTG	5 cut(s)	48, 333, 635, 641, 1192
MvaI	CCWGG	2 cut(s)	584, 948
MvnI	CGCG	2 cut(s)	768, 956
MwoI	GCNNNNNNNGC	4 cut(s)	497, 899, 1040, 1337
NdeII	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
NlaIII	CATG	8 cut(s)	65, 250, 413, 485, 623, 893, 1067, 1295
NlaIV	GGNNCC	1 cut(s)	1015
NmuCI	GTSAC	1 cut(s)	719
NruI	TCGCGA	1 cut(s)	768
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	893
PaeI	GCATGC	1 cut(s)	893
PagI	TCATGA	1 cut(s)	1291
PfeI	GAWTC	7 cut(s)	272, 742, 776, 840, 1118, 1222, 1252
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	3 cut(s)	759, 934, 1339
PleI	GAGTC	2 cut(s)	945, 1307
PpsI	GAGTC	2 cut(s)	945, 1307
Psp6I	CCWGG	2 cut(s)	582, 946
PspEI	GGTNACC	1 cut(s)	1362
PspGI	CCWGG	2 cut(s)	582, 946
PspN4I	GGNNCC	1 cut(s)	1015
PstI	CTGCAG	1 cut(s)	550
PvuII	CAGCTG	2 cut(s)	224, 1337
RruI	TCGCGA	1 cut(s)	768
RsaI	GTAC	2 cut(s)	631, 1201
RsaNI	GTAC	2 cut(s)	630, 1200
SaqAI	TTAA	6 cut(s)	75, 422, 564, 725, 911, 918
SatI	GCNGC	3 cut(s)	758, 933, 1338
Sau3AI	GATC	6 cut(s)	44, 193, 430, 860, 979, 1288
SchI	GAGTC	2 cut(s)	945, 1307
ScrFI	CCNGG	2 cut(s)	584, 948
SduI	GDGCHC	3 cut(s)	473, 524, 835
SfaNI	GCATC	4 cut(s)	118, 494, 1088, 1340
SfcI	CTRYAG	2 cut(s)	300, 546
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
SphI	GCATGC	1 cut(s)	893
SsiI	CCGC	4 cut(s)	113, 846, 956, 1124
SspMI	CTAG	2 cut(s)	693, 1037
StyD4I	CCNGG	2 cut(s)	582, 946
StyI	CCWWGG	2 cut(s)	1017, 1166
TaqI	TCGA	3 cut(s)	43, 379, 1243
TfiI	GAWTC	7 cut(s)	272, 742, 776, 840, 1118, 1222, 1252
Tru1I	TTAA	6 cut(s)	75, 422, 564, 725, 911, 918
Tru9I	TTAA	6 cut(s)	75, 422, 564, 725, 911, 918
TscAI	CASTG	2 cut(s)	618, 835
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	3 cut(s)	757, 932, 1337
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	5 cut(s)	139, 398, 548, 566, 1052
TspGWI	ACGGA	2 cut(s)	695, 1364
TspRI	CASTG	2 cut(s)	618, 835
XapI	RAATTY	7 cut(s)	181, 216, 401, 697, 762, 870, 1369
XceI	RCATGY	1 cut(s)	893
XspI	CTAG	2 cut(s)	693, 1037
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.