Rh4CG122200

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007226
Physical Location & Seq
Reverse (-)
23423879 .. 23424277
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG122200.1

Sequence Viewer

Length: 399 bp
ATGAGCAACAATAGCTGGTCTTTACTCAGCCGCCTAAGGAGGGCTGTGAAGAAGGTAAGCTTCCTTCTAAATCTCAACATGAACCGCTGGCGAATCTCTTCCATGCTCAGCCGTTCTTCTTCCACTGTGCACCGCATAAGGAGCTTCAACGACCGGCCAGCTGGACTGACCGCAGCGTGTGACTCCAATGAGACCGCAGGCTCCAAGGAGGATTTCGGATCTTCTAGGGGATCACCTCATCTACAGAGGACAATAAGCTACCCGTCGGATCAAGATGATATCGATCAGAGAGCAGAGATGTTCATAGCTAATTTCCGGCGCCAACTTCAGATTGAAAGACAGGTCTCTTTGGAGCTGAGATACTGCAGAGGAAATAGTTTTGAAATGGCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

132

Amino Acids

15.15

Weight (kDa)

10.42

Isoelectric Point (pI)

73.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 91 - 122 8.5e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 5 cut(s) 31, 85, 133, 171, 195
AclWI GGATC 3 cut(s) 226, 238, 276
AcoI YGGCCR 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 3 cut(s) 148, 335, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 7 cut(s) 15, 60, 144, 161, 258, 308, 355
AluI AGCT 7 cut(s) 15, 60, 144, 161, 258, 308, 355
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 185, 349
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 3 cut(s) 226, 238, 276
AoxI GGCC 1 cut(s) 155
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 185, 349
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 2 cut(s) 242, 364
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 2 cut(s) 31, 174
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 2 cut(s) 32, 175
BmiI GGNNCC 2 cut(s) 202, 320
Bpu1102I GCTNAGC 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 2 cut(s) 185, 349
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 40, 121, 347
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 154, 316
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 185, 349
BsnI GGCC 1 cut(s) 157
Bso31I GGTCTC 2 cut(s) 185, 349
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 4 cut(s) 218, 230, 268, 283
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 5 cut(s) 31, 85, 133, 171, 195
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 3 cut(s) 39, 120, 348
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 202, 320
BspMAI CTGCAG 1 cut(s) 368
BspPI GGATC 3 cut(s) 226, 238, 276
BspT107I GGYRCC 1 cut(s) 318
BspTNI GGTCTC 2 cut(s) 185, 349
BsrFI RCCGGY 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 4 cut(s) 218, 230, 268, 283
BssNI GRCGYC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 3 cut(s) 89, 159, 199
BstDEI CTNAG 4 cut(s) 26, 35, 107, 356
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 4 cut(s) 221, 233, 271, 286
BstMAI GTCTC 2 cut(s) 185, 349
BstMBI GATC 4 cut(s) 218, 230, 268, 283
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 12, 141
BstSFI CTRYAG 2 cut(s) 242, 364
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 89, 159, 199
CfoI GCGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 153
ClaI ATCGAT 1 cut(s) 282
CviAII CATG 2 cut(s) 79, 103
DdeI CTNAG 4 cut(s) 26, 35, 107, 356
DinI GGCGCC 1 cut(s) 320
DpnI GATC 4 cut(s) 220, 232, 270, 285
DpnII GATC 4 cut(s) 218, 230, 268, 283
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 2 cut(s) 185, 349
Eco32I GATATC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 35
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 320
EheI GGCGCC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 82, 106
FaiI YATR 4 cut(s) 80, 104, 137, 305
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 2 cut(s) 78, 102
Fnu4HI GCNGC 2 cut(s) 31, 174
Fsp4HI GCNGC 2 cut(s) 31, 174
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 320
GluI GCNGC 2 cut(s) 31, 174
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 154, 316
HhaI GCGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 2 cut(s) 82, 106
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 2 cut(s) 93, 182
HpaII CCGG 2 cut(s) 154, 316
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 4 cut(s) 218, 268, 288, 330
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 46, 74
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 130, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 141
HpyF3I CTNAG 4 cut(s) 26, 35, 107, 356
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 2 cut(s) 82, 106
HspAI GCGC 1 cut(s) 319
KasI GGCGCC 1 cut(s) 318
Kzo9I GATC 4 cut(s) 218, 230, 268, 283
LmnI GCTCC 3 cut(s) 141, 206, 352
LpnPI CCDG 7 cut(s) 73, 147, 167, 171, 183, 326, 329
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 220, 232, 270, 285
MboI GATC 4 cut(s) 218, 230, 268, 283
MboII GAAGA 5 cut(s) 61, 90, 108, 111, 213
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 310
Mly113I GGCGCC 1 cut(s) 319
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 33, 202, 240, 246, 362
MroXI GAANNNNTTC 1 cut(s) 97
MspA1I CMGCKG 2 cut(s) 87, 161
MspI CCGG 2 cut(s) 154, 316
MwoI GCNNNNNNNGC 2 cut(s) 12, 141
NarI GGCGCC 1 cut(s) 319
NdeII GATC 4 cut(s) 218, 230, 268, 283
NlaIII CATG 2 cut(s) 82, 106
NlaIV GGNNCC 2 cut(s) 202, 320
NmuCI GTSAC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 32, 175
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 202, 320
PstI CTGCAG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 161
SatI GCNGC 2 cut(s) 31, 174
Sau3AI GATC 4 cut(s) 218, 230, 268, 283
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 132
SfcI CTRYAG 2 cut(s) 242, 364
SfoI GGCGCC 1 cut(s) 320
Sse9I AATT 1 cut(s) 310
SsiI CCGC 5 cut(s) 31, 85, 133, 171, 195
SspDI GGCGCC 1 cut(s) 318
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 310
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 95, 292
TspRI CASTG 1 cut(s) 130
VneI GTGCAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.