Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007226

Physical Location & Seq

Genomic Coordinates Reverse (-)

23420692 .. 23421578

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGCAACATTACCTGGTCTTTACTCAGCCGCCTTAGGAGGGCTGTGAAGAAGGTAAGCTTCCTTCTAAATCTCAACATGAACCGCTGGCAAATCGCTTCCATGCTCAGCCGTTCTTCTTCCACTGTGCACTGCATAAGGAGCTTCAACGACTGGCCAGCTGGACTGACCGCAGCGTGTGACTCCGATGAGACCGCAGGCTCGAAGGAGGATTCCGGGTCTTCTAGGGGATCACGTCATCTACAGAGGCTACCCGTCGGATCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

89

Amino Acids

9.9

Weight (kDa)

11.14

Isoelectric Point (pI)

83.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57510
fragaria_vesca	FvH4_3g45900 FvH4_4g09360
malus_domestica	MD12G1161200.v1.1 MD13G1257600.v1.1
prunus_persica	Prupe.1G087800_v2.0.a1
pyrus_communis	pycom13g22090 pycom16g22060
rosa_chinensis	RchiOBHm_Chr4g0402691 RchiOBHm_Chr4g0402701
rosa_laevigata	RLG00000009053
rosa_multiflora	Rmu_sc0009850.1_g000001 Rmu_sc0009850.1_g000002 Rmu_sc0009851.1_g000001 Rmu_sc0009851.1_g000002
rosa_roxburghii	Rroxscaffold_5G00347430
rosa_rugosa	Rorug04G0037700
rosa_samantha	Rh4AG115300 Rh4BG107800 Rh4CG122100 Rh4CG122200 Rh4DG107600 Rh4DG107800
rosa_wichuraiana	Rw4G009190 Rw4G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	31, 85, 171, 195
AclWI	GGATC	2 cut(s)	238, 268
AcoI	YGGCCR	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	60, 144, 161
AluI	AGCT	3 cut(s)	60, 144, 161
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	185
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	238, 268
AoxI	GGCC	1 cut(s)	155
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	31, 174
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	2 cut(s)	32, 175
Bme1390I	CCNGG	2 cut(s)	16, 217
BmgBI	CACGTC	1 cut(s)	236
BmrFI	CCNGG	2 cut(s)	16, 217
BpiI	GAAGAC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	40, 121
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	230, 260
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	4 cut(s)	31, 85, 171, 195
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	39, 120
BspPI	GGATC	2 cut(s)	238, 268
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	230, 260
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	89, 159, 199
BstDEI	CTNAG	3 cut(s)	26, 35, 107
BstKTI	GATC	2 cut(s)	233, 263
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	230, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	14, 215
BstSFI	CTRYAG	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	123, 130
Cac8I	GCNNGC	3 cut(s)	89, 159, 199
CsiI	ACCWGGT	1 cut(s)	14
CviAII	CATG	2 cut(s)	79, 103
CviJI	RGCY	9 cut(s)	30, 44, 60, 111, 144, 157, 161, 201, 250
CviKI_1	RGCY	9 cut(s)	30, 44, 60, 111, 144, 157, 161, 201, 250
DdeI	CTNAG	3 cut(s)	26, 35, 107
DpnI	GATC	2 cut(s)	232, 262
DpnII	GATC	2 cut(s)	230, 260
EaeI	YGGCCR	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	82, 106
FaiI	YATR	3 cut(s)	80, 104, 137
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	2 cut(s)	78, 102
Fnu4HI	GCNGC	2 cut(s)	31, 174
Fsp4HI	GCNGC	2 cut(s)	31, 174
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	2 cut(s)	31, 174
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	2 cut(s)	82, 106
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	2 cut(s)	182, 212
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	187, 260
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	46, 74, 199
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	130, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	26, 35, 107
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	82, 106
Kzo9I	GATC	2 cut(s)	230, 260
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	7 cut(s)	28, 73, 139, 147, 171, 183, 229
Lsp1109I	GCAGC	1 cut(s)	185
MabI	ACCWGGT	1 cut(s)	14
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	232, 262
MboI	GATC	2 cut(s)	230, 260
MboII	GAAGA	4 cut(s)	61, 108, 111, 213
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	33, 202, 240
Mox20I	TGGCCA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	157
Msp20I	TGGCCA	1 cut(s)	157
MspA1I	CMGCKG	2 cut(s)	87, 161
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	16, 217
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	230, 260
NlaIII	CATG	2 cut(s)	82, 106
NmuCI	GTSAC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	32, 175
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	161
SatI	GCNGC	2 cut(s)	31, 174
Sau3AI	GATC	2 cut(s)	230, 260
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	16, 217
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	6 cut(s)	17, 57, 62, 146, 163, 238
SexAI	ACCWGGT	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	242
SsiI	CCGC	4 cut(s)	31, 85, 171, 195
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	14, 215
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	203
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	2 cut(s)	130, 137
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	130, 137
VneI	GTGCAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.