Rh4DG107600

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007226
Physical Location & Seq
Reverse (-)
16518747 .. 16519148
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG107600.1

Sequence Viewer

Length: 402 bp
ATGAGCAACATTACCTGGTCTTTACTCAGCCGCCTAAGGAGGGCTGTGAAGAAGGTAAGCTTCCTTCTAAATCTCAACATGAACCGCTGGCGAATCGCTTCCATGCTCAGCCGTTCTTTTTCCACTGTGCACTGCATAAGGAGCTTCAACGACTGGCCAGCTGGACTGACCGCAGCGTGTGACTCCGATGAGACCGCAGCCTCGGAGGAGGATTCCGGGTCTTCTAGGGGATCACGTCATCTACAGAGGACCATAAGCTTCCCGTCGGATCAAGATGATATCGATCAGAGAGCAGAGATGTTCATAGCTAATTTCCGGCGCCAACTTCAGATTGAAAGACAGGTCTCTTTGGAGCTGAGATACTGCAGAGGAAATAGTTTTGAAATGGCATCTCCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

133

Amino Acids

15.34

Weight (kDa)

9.48

Isoelectric Point (pI)

75.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 91 - 122 8.6e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 4 cut(s) 31, 85, 171, 195
AclWI GGATC 2 cut(s) 238, 276
AcoI YGGCCR 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 3 cut(s) 148, 335, 383
AjiI CACGTC 1 cut(s) 236
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 6 cut(s) 60, 144, 161, 258, 308, 355
AluI AGCT 6 cut(s) 60, 144, 161, 258, 308, 355
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 185, 349
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 2 cut(s) 238, 276
AoxI GGCC 1 cut(s) 155
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 173, 197
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 249
AxyI CCTNAGG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 185, 209
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 16
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 185, 349
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 2 cut(s) 242, 364
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 3 cut(s) 31, 174, 198
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 3 cut(s) 32, 175, 199
Bme1390I CCNGG 2 cut(s) 16, 217
Bme18I GGWCC 1 cut(s) 249
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 2 cut(s) 16, 217
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 217
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 2 cut(s) 185, 349
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 40, 121, 347
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 221, 384
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 2 cut(s) 185, 209
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 216, 316
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 185, 349
BsnI GGCC 1 cut(s) 157
Bso31I GGTCTC 2 cut(s) 185, 349
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 230, 268, 283
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 4 cut(s) 31, 85, 171, 195
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 3 cut(s) 39, 120, 348
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 320
BspMAI CTGCAG 1 cut(s) 368
BspPI GGATC 2 cut(s) 238, 276
BspT107I GGYRCC 1 cut(s) 318
BspTNI GGTCTC 2 cut(s) 185, 349
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 230, 268, 283
BssNI GRCGYC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 89, 159
BstDEI CTNAG 4 cut(s) 26, 35, 107, 356
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 233, 271, 286
BstMAI GTCTC 2 cut(s) 185, 349
BstMBI GATC 3 cut(s) 230, 268, 283
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 14, 215
BstSFI CTRYAG 2 cut(s) 242, 364
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 185, 209
BstV2I GAAGAC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 282
BtrI CACGTC 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 123, 130
Cac8I GCNNGC 2 cut(s) 89, 159
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 14
CviAII CATG 2 cut(s) 79, 103
DdeI CTNAG 4 cut(s) 26, 35, 107, 356
DinI GGCGCC 1 cut(s) 320
DpnI GATC 3 cut(s) 232, 270, 285
DpnII GATC 3 cut(s) 230, 268, 283
EaeI YGGCCR 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 185, 349
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 280
EgeI GGCGCC 1 cut(s) 320
EheI GGCGCC 1 cut(s) 320
FaeI CATG 2 cut(s) 82, 106
FaiI YATR 5 cut(s) 80, 104, 137, 254, 305
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 2 cut(s) 78, 102
Fnu4HI GCNGC 3 cut(s) 31, 174, 198
Fsp4HI GCNGC 3 cut(s) 31, 174, 198
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 320
GluI GCNGC 3 cut(s) 31, 174, 198
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 216, 316
HhaI GCGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 2 cut(s) 82, 106
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 58, 256
HinfI GANTC 3 cut(s) 93, 182, 212
HpaII CCGG 2 cut(s) 216, 316
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 5 cut(s) 187, 205, 268, 288, 330
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 46, 74
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 130, 135, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 4 cut(s) 26, 35, 107, 356
HpySE526I ACGT 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 2 cut(s) 82, 106
HspAI GCGC 1 cut(s) 319
KasI GGCGCC 1 cut(s) 318
Kzo9I GATC 3 cut(s) 230, 268, 283
LmnI GCTCC 2 cut(s) 141, 352
LpnPI CCDG 8 cut(s) 28, 73, 139, 147, 171, 229, 326, 329
Lsp1109I GCAGC 2 cut(s) 185, 209
LweI GCATC 1 cut(s) 398
MabI ACCWGGT 1 cut(s) 14
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 232, 270, 285
MboI GATC 3 cut(s) 230, 268, 283
MboII GAAGA 2 cut(s) 61, 213
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 1 cut(s) 310
MluNI TGGCCA 1 cut(s) 157
Mly113I GGCGCC 1 cut(s) 319
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 33, 199, 202, 211, 240, 362
Mox20I TGGCCA 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 97
MscI TGGCCA 1 cut(s) 157
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 2 cut(s) 87, 161
MspI CCGG 2 cut(s) 216, 316
MspR9I CCNGG 2 cut(s) 16, 217
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 141
NarI GGCGCC 1 cut(s) 319
NciI CCSGG 1 cut(s) 217
NdeII GATC 3 cut(s) 230, 268, 283
NlaIII CATG 2 cut(s) 82, 106
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 93, 212
PkrI GCNGC 3 cut(s) 32, 175, 199
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 1 cut(s) 249
PstI CTGCAG 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 161
SatI GCNGC 3 cut(s) 31, 174, 198
Sau3AI GATC 3 cut(s) 230, 268, 283
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 16, 217
SduI GDGCHC 1 cut(s) 132
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 2 cut(s) 242, 364
SfoI GGCGCC 1 cut(s) 320
SinI GGWCC 1 cut(s) 249
Sse9I AATT 1 cut(s) 310
SsiI CCGC 4 cut(s) 31, 85, 171, 195
SspDI GGCGCC 1 cut(s) 318
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 14, 215
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 282, 397
TasI AATT 1 cut(s) 310
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 93, 212
TscAI CASTG 2 cut(s) 130, 137
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 173, 197
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 95, 292
TspRI CASTG 2 cut(s) 130, 137
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.