FvH4_3g45900

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007226
Physical Location & Seq
Forward (+)
38065608 .. 38066804
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45900.t1

Sequence Viewer

Length: 552 bp
ATGAGCAACAACAACAGCTGGTATTTGCTGAGCCGCCTAAGGAGGGCTGTGAAGAAGGTAAGCTTTCTCCTAAATCTCAACATGAACCGCTGGCGAATCGCCTCCATGCTCAGCCGTTCTTCTTCCGCTGTACAACGCATAAGGAGCTTCAACGACCGGCCAGCTGGACTGACCGCAGCCTGTGATTCCGATGAGAACTCGGAGGAGGATTCTGTGTCTTCTACGGGATCATCACGTCATCTTCAGAGAACCATAAGCTACCCGTCGGATCAAGATGATATCGATCAGAGAGCAGAGATGTTCATAGCTAATTTCCGCCGCCAACTTCAGATTGAAAGGCAGGTCTCTTTGGAGCTGAGATACTGCAGAGGAAATAGTTTAGATATGGGGATAGATGTGATAAATGACGATTCTTACACCTCAATAAGAAGCCTGATGATTCATGTGTCTCTGCCGCGCATTACTTTGCATGTTGTTTCTGGTGCTGGTATGAGTCCTAAAGATAAAGACAAAGGAAAGATGTACCTTTGCTTGTTTTTGCCTAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

184

Amino Acids

20.86

Weight (kDa)

9.33

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 91 - 122 1.5e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccII CGCG 1 cut(s) 457
AciI CCGC 7 cut(s) 34, 88, 126, 174, 316, 319, 455
AclWI GGATC 2 cut(s) 235, 276
AcoI YGGCCR 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 227, 311
AfaI GTAC 2 cut(s) 132, 524
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 151, 335
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 7 cut(s) 18, 63, 147, 164, 258, 308, 355
AluI AGCT 7 cut(s) 18, 63, 147, 164, 258, 308, 355
Alw26I GTCTC 2 cut(s) 349, 453
AlwI GGATC 2 cut(s) 235, 276
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 459
AxyI CCTNAGG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 349, 453
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 4 cut(s) 34, 177, 319, 455
BlpI GCTNAGC 2 cut(s) 29, 110
BlsI GCNGC 4 cut(s) 35, 178, 320, 456
BmgBI CACGTC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 210
Bpu1102I GCTNAGC 2 cut(s) 29, 110
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 349
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 156
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 20, 124, 347
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 349, 453
BsnI GGCC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 349
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 227, 268, 283
Bsp1720I GCTNAGC 2 cut(s) 29, 110
BspACI CCGC 7 cut(s) 34, 88, 126, 174, 316, 319, 455
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 3 cut(s) 21, 123, 348
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 235, 276
BspTNI GGTCTC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 156
BssMI GATC 3 cut(s) 227, 268, 283
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 92, 162
BstDEI CTNAG 4 cut(s) 29, 38, 110, 356
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 3 cut(s) 230, 271, 286
BstMAI GTCTC 2 cut(s) 349, 453
BstMBI GATC 3 cut(s) 227, 268, 283
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 473
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 1 cut(s) 282
BtrI CACGTC 1 cut(s) 236
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 92, 162
CfoI GCGC 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 2 cut(s) 131, 523
CviAII CATG 4 cut(s) 82, 106, 443, 470
CviQI GTAC 2 cut(s) 131, 523
DdeI CTNAG 4 cut(s) 29, 38, 110, 356
DpnI GATC 3 cut(s) 229, 270, 285
DpnII GATC 3 cut(s) 227, 268, 283
EaeI YGGCCR 1 cut(s) 158
EciI GGCGGA 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 349
Eco32I GATATC 1 cut(s) 280
Eco57I CTGAAG 2 cut(s) 227, 311
Eco81I CCTNAGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 280
FaeI CATG 4 cut(s) 85, 109, 446, 473
FaiI YATR 9 cut(s) 83, 107, 140, 254, 305, 386, 444, 471, 491
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 4 cut(s) 81, 105, 442, 469
Fnu4HI GCNGC 4 cut(s) 34, 177, 319, 455
Fsp4HI GCNGC 4 cut(s) 34, 177, 319, 455
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 458
GluI GCNGC 4 cut(s) 34, 177, 319, 455
HaeIII GGCC 1 cut(s) 160
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 459
Hin1II CATG 4 cut(s) 85, 109, 446, 473
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 6 cut(s) 96, 185, 209, 410, 439, 493
HpaII CCGG 1 cut(s) 157
Hpy188I TCNGA 6 cut(s) 190, 202, 246, 268, 288, 330
Hpy188III TCNNGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 366, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 4 cut(s) 29, 38, 110, 356
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 4 cut(s) 85, 109, 446, 473
HspAI GCGC 1 cut(s) 457
Kzo9I GATC 3 cut(s) 227, 268, 283
LmnI GCTCC 2 cut(s) 144, 352
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 235
MalI GATC 3 cut(s) 229, 270, 285
MboI GATC 3 cut(s) 227, 268, 283
MboII GAAGA 5 cut(s) 64, 111, 114, 210, 233
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 36, 112, 196, 199, 362, 430
MspA1I CMGCKG 4 cut(s) 18, 90, 128, 164
MspI CCGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 3 cut(s) 227, 268, 283
NlaIII CATG 4 cut(s) 85, 109, 446, 473
NspI RCATGY 1 cut(s) 473
PfeI GAWTC 5 cut(s) 96, 185, 209, 410, 439
PkrI GCNGC 4 cut(s) 35, 178, 320, 456
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PstI CTGCAG 1 cut(s) 368
PvuII CAGCTG 2 cut(s) 18, 164
RsaI GTAC 2 cut(s) 132, 524
RsaNI GTAC 2 cut(s) 131, 523
SatI GCNGC 4 cut(s) 34, 177, 319, 455
Sau3AI GATC 3 cut(s) 227, 268, 283
SchI GAGTC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 364
Sse9I AATT 1 cut(s) 310
SsiI CCGC 7 cut(s) 34, 88, 126, 174, 316, 319, 455
SspMI CTAG 1 cut(s) 543
TaiI ACGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 310
TatI WGTACW 1 cut(s) 130
TauI GCSGC 3 cut(s) 36, 321, 457
TfiI GAWTC 5 cut(s) 96, 185, 209, 410, 439
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 98, 292, 431
XceI RCATGY 1 cut(s) 473
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.