MD13G1257600.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007226
Physical Location & Seq
Reverse (-)
30227836 .. 30228219
384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1257600.v1.1.491

Sequence Viewer

Length: 384 bp
ATGAAGACGGACAAGTGGTCTTTATTGAGCCGCCTTAGGAAGGCCGTGAAGAAGGTAAGCTTACTACTAAACCTCAACGTGAATCGCTGGCGAATCGCTTCGGTGATCGGCCGTACTATTTCTGGCGACCACCGGTTGATGAGCTTCAATGACCGTCCGGGGCTGAGAGCGGCGTGTAGCGATGAGAACAGCTCCGAGGAGGACTCAGGGTCTTCTAGGGGATATCTTCAGAGGAACATAATCTATCCATTGGATCAAGATGATATTGACCAAAGAGCAGAGATGTTCATAGGGAATTTCCGTCGCCAACTTCAGGTGGAGAGACAAATTTCGTTGGAGCTTCGGTATTGCAGAGAAAATATTTTTGACTTGAAGTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

128

Amino Acids

14.83

Weight (kDa)

9.56

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 86 - 117 6e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 2 cut(s) 31, 170
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 295, 327
AcuI CTGAAG 2 cut(s) 212, 296
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 40, 313
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 148, 373
AhdI GACNNNNNGTC 3 cut(s) 16, 208, 373
AluBI AGCT 4 cut(s) 60, 144, 192, 340
AluI AGCT 4 cut(s) 60, 144, 192, 340
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 261
AoxI GGCC 2 cut(s) 42, 109
ApoI RAATTY 2 cut(s) 295, 327
AsiGI ACCGGT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 11, 204
BceAI ACGGC 2 cut(s) 29, 96
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 31, 171
BlsI GCNGC 2 cut(s) 32, 172
Bme1390I CCNGG 1 cut(s) 159
BmeRI GACNNNNNGTC 3 cut(s) 16, 208, 373
BmrFI CCNGG 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 11, 204
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 188, 220
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 158, 195
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 313
Bse118I RCCGGY 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 158, 195
BseLI CCNNNNNNNGG 2 cut(s) 40, 313
BseMII CTCAG 2 cut(s) 155, 219
BseRI GAGGAG 1 cut(s) 212
BseX3I CGGCCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 44, 111
BshTI ACCGGT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 133, 158
BslI CCNNNNNNNGG 2 cut(s) 40, 313
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 2 cut(s) 44, 111
Bsp143I GATC 2 cut(s) 105, 253
BspACI CCGC 2 cut(s) 31, 170
BspANI GGCC 2 cut(s) 44, 111
BspCNI CTCAG 2 cut(s) 156, 218
BspPI GGATC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 158, 195
BssMI GATC 2 cut(s) 105, 253
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 35, 164, 205
BstENI CCTNNNNNAGG 1 cut(s) 38
BstKTI GATC 2 cut(s) 108, 256
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 2 cut(s) 105, 253
BstMCI CGRYCG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 157
BstV2I GAAGAC 2 cut(s) 11, 204
BstZI CGGCCG 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 2 cut(s) 44, 111
BtgZI GCGATG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 132
Csp6I GTAC 1 cut(s) 114
CspAI ACCGGT 1 cut(s) 132
CviJI RGCY 8 cut(s) 30, 44, 60, 111, 144, 163, 192, 340
CviKI_1 RGCY 8 cut(s) 30, 44, 60, 111, 144, 163, 192, 340
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 3 cut(s) 35, 164, 205
DpnI GATC 2 cut(s) 107, 255
DpnII GATC 2 cut(s) 105, 253
DriI GACNNNNNGTC 3 cut(s) 16, 208, 373
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1105I GACNNNNNGTC 3 cut(s) 16, 208, 373
EclXI CGGCCG 1 cut(s) 109
Eco32I GATATC 1 cut(s) 224
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 212, 296
Eco81I CCTNAGG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 224
FaiI YATR 2 cut(s) 239, 290
FalI AAGNNNNNCTT 2 cut(s) 44, 76
Fnu4HI GCNGC 2 cut(s) 31, 171
Fsp4HI GCNGC 2 cut(s) 31, 171
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 31, 171
HaeIII GGCC 2 cut(s) 44, 111
HapII CCGG 2 cut(s) 133, 158
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 3 cut(s) 82, 93, 203
HpaII CCGG 2 cut(s) 133, 158
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 196, 231
Hpy188III TCNNGA 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 34, 46
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 351
HpyF3I CTNAG 3 cut(s) 35, 164, 205
HpySE526I ACGT 1 cut(s) 78
Kzo9I GATC 2 cut(s) 105, 253
LmnI GCTCC 2 cut(s) 197, 337
LpnPI CCDG 6 cut(s) 73, 108, 146, 171, 192, 299
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 78
MalI GATC 2 cut(s) 107, 255
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 105, 253
MboII GAAGA 4 cut(s) 16, 61, 204, 218
MluCI AATT 2 cut(s) 295, 327
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 4 cut(s) 83, 190, 193, 225
MroXI GAANNNNTTC 1 cut(s) 97
MspI CCGG 2 cut(s) 133, 158
MspR9I CCNGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 105, 253
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 82, 93
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 2 cut(s) 32, 172
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SatI GCNGC 2 cut(s) 31, 171
Sau3AI GATC 2 cut(s) 105, 253
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 159
SetI ASST 8 cut(s) 57, 62, 75, 81, 146, 194, 318, 342
Sse9I AATT 2 cut(s) 295, 327
SsiI CCGC 2 cut(s) 31, 170
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 81
TasI AATT 2 cut(s) 295, 327
TauI GCSGC 2 cut(s) 33, 173
TfiI GAWTC 2 cut(s) 82, 93
TspDTI ATGAA 2 cut(s) 17, 277
TspGWI ACGGA 2 cut(s) 23, 290
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 295, 327
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.