RLG00000009053

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007226
Physical Location & Seq
Forward (+)
45719341 .. 45722620
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009053

Sequence Viewer

Length: 1242 bp
ATGGACATGAGCAACATTAGCTGGTCTTTACTCAGCCGCCTAAGGAGGGCTGTGAAGAAGGTAAGCTTCCTTCTAAATCTCAGCATGAACCGCTGGCGAATCGCTTCCATGCTTAGCCGTTCTTCTTCCACTGTGCACTGCATCAGGAGCTTCAACGACTGGCCAGCTGGACTGACCGCAGCGTGTGACTCCGATGAGACCGCAGGCTCGGAGGAGGATTTCGGATCTTCTAGGGGATCACGTCATCTACAGAGGACCATAAGCTACCCGTCGGATCGAGATGATATCGATCAGAGAGCAGAGATGTTCATAGCTAATTTCCGGCGCCAACTTCAGATTGAAAGACAGGGCTCCGAGCAATTACTTCTTCTTCAAATGCTTACTAAGGAAAATACTGTTGGTGCCAATTTCGTCATCAACGGGTCAACGAAAGTTCTGTTGAAATCCAAGTGTAAAGTGTATGGCCTCAGGCTTCCTTCGATTGATGTTGGGCCTCCAAGCTCCTTGTTGGGTGAAACTGATAGTCTCGTCTCGGACTTCCTTCACCTGATGTTGGGCCTCCAAGCTACCTTGTTGGGTGAAACTGATAGTCTCGTCTCGGACTTCCTTCAACTAATACTTCCTTCACCTGATGCTGGGCTTCCAATCTCCTTGTTAGGTGAGACTGATAGTCTCATCTCGGGCTTCCTTCACCTGATGTTGGGCCTCCAAGCTACCTTGTTAGGTGAAACTGATAGCCTCGCCTCTGGCTTCCTTCACCTAATGTTGGGCCTCCAAGATACCTTGTTGGGTGAAGCTGATAGCCTCACCTCGGGCTTCTCTAGTCTCAGGCTCCCTTCACCTAACGTCTCGGGATTCCTCCACTTGACATTGGGCATCCAATCTGTGACTTGGGTGTATATCAACCTCCTATTAAGCATCCAGTCTGGCTTGGGCGTACAATATCCTCCACCTGACGCTGGGCATCCACTGCCTCGAGTTGGCAGACCTCTATGGAAAGGACCTGCAAATGTGAAGAGATGGAAGAGTGGTATTTATAGGAGAAGGATGACTGAGATGGTAAAGGAAGGCATGGGTTCTTCCCAAAAATCAGGGTGTCGGCCCCATAATTTCTGCTTCCTGACACTCCATCAGACAGAGTTGGTGACAGGTGTCATCAACTCTGTGGTCTCTTCCTTTCACGTCACTCTTGGGCCATGCCCACAGACCATACTCATCATCAGAGCACGACACCTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

414

Amino Acids

45.31

Weight (kDa)

8.52

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 93 - 118 5.9e-08 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1012
AccB1I GGYRCC 2 cut(s) 324, 401
AciI CCGC 4 cut(s) 37, 91, 177, 201
AclWI GGATC 3 cut(s) 232, 244, 282
AcoI YGGCCR 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 8 cut(s) 46, 553, 635, 700, 766, 811, 959, 980
AgsI TTSAA 5 cut(s) 154, 341, 374, 442, 611
AhdI GACNNNNNGTC 1 cut(s) 669
AjiI CACGTC 2 cut(s) 242, 1183
AjnI CCWGG 1 cut(s) 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
Alw21I GWGCWC 2 cut(s) 138, 1228
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 3 cut(s) 232, 244, 282
Ama87I CYCGRG 4 cut(s) 679, 811, 850, 975
AoxI GGCC 9 cut(s) 161, 463, 491, 556, 703, 769, 1100, 1193, 1236
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 8 cut(s) 255, 491, 556, 703, 769, 1001, 1101, 1193
AvaI CYCGRG 4 cut(s) 679, 811, 850, 975
AvaII GGWCC 2 cut(s) 255, 1001
AxyI CCTNAGG 2 cut(s) 41, 467
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 163
BanI GGYRCC 2 cut(s) 324, 401
BanII GRGCYC 1 cut(s) 353
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
Bbv12I GWGCWC 2 cut(s) 138, 1228
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 1014, 1051, 1137
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 1235
BfaI CTAG 3 cut(s) 231, 822, 1240
BfmI CTRYAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 1012
BisI GCNGC 2 cut(s) 37, 180
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 2 cut(s) 38, 181
Bme1390I CCNGG 1 cut(s) 1235
Bme18I GGWCC 2 cut(s) 255, 1001
BmeRI GACNNNNNGTC 1 cut(s) 669
BmeT110I CYCGRG 4 cut(s) 679, 811, 850, 975
BmgBI CACGTC 2 cut(s) 242, 1183
BmgT120I GGNCC 8 cut(s) 255, 491, 556, 703, 769, 1001, 1101, 1193
BmiI GGNNCC 5 cut(s) 326, 352, 403, 833, 1103
BmrFI CCNGG 1 cut(s) 1235
BmsI GCATC 5 cut(s) 150, 622, 885, 927, 973
BoxI GACNNNNGTC 1 cut(s) 1151
Bpu1102I GCTNAGC 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 191, 1174
BsaJI CCNNGG 1 cut(s) 810
Bsc4I CCNNNNNNNGG 8 cut(s) 46, 553, 635, 700, 766, 811, 959, 980
Bse1I ACTGG 2 cut(s) 164, 922
Bse21I CCTNAGG 2 cut(s) 41, 467
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 1235
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 810
BseGI GGATG 4 cut(s) 876, 918, 964, 1053
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 8 cut(s) 46, 553, 635, 700, 766, 811, 959, 980
BseMII CTCAG 5 cut(s) 46, 94, 481, 841, 1044
BseNI ACTGG 2 cut(s) 164, 922
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 191
BseYI CCCAGC 2 cut(s) 635, 959
BshFI GGCC 9 cut(s) 163, 465, 493, 558, 705, 771, 1102, 1195, 1238
BshNI GGYRCC 2 cut(s) 324, 401
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 138, 1228
BsiHKCI CYCGRG 4 cut(s) 679, 811, 850, 975
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 8 cut(s) 46, 553, 635, 700, 766, 811, 959, 980
BsmBI CGTCTC 3 cut(s) 535, 601, 853
BsnI GGCC 9 cut(s) 163, 465, 493, 558, 705, 771, 1102, 1195, 1238
Bso31I GGTCTC 2 cut(s) 191, 1174
BsoBI CYCGRG 4 cut(s) 679, 811, 850, 975
Bsp1286I GDGCHC 3 cut(s) 138, 353, 1228
Bsp143I GATC 4 cut(s) 224, 236, 274, 289
Bsp1720I GCTNAGC 1 cut(s) 113
BspACI CCGC 4 cut(s) 37, 91, 177, 201
BspANI GGCC 9 cut(s) 163, 465, 493, 558, 705, 771, 1102, 1195, 1238
BspCNI CTCAG 5 cut(s) 45, 93, 480, 840, 1045
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 5 cut(s) 326, 352, 403, 833, 1103
BspMI ACCTGC 1 cut(s) 1012
BspPI GGATC 3 cut(s) 232, 244, 282
BspT107I GGYRCC 2 cut(s) 324, 401
BspTNI GGTCTC 2 cut(s) 191, 1174
BsrI ACTGG 2 cut(s) 164, 922
BssECI CCNNGG 1 cut(s) 810
BssMI GATC 4 cut(s) 224, 236, 274, 289
BssNI GRCGYC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 1235
Bst4CI ACNGT 2 cut(s) 133, 397
Bst6I CTCTTC 3 cut(s) 1010, 1019, 1177
BstACI GRCGYC 1 cut(s) 325
BstAPI GCANNNNNTGC 1 cut(s) 970
BstC8I GCNNGC 3 cut(s) 95, 165, 205
BstDEI CTNAG 8 cut(s) 32, 41, 80, 113, 384, 467, 827, 1053
BstF5I GGATG 4 cut(s) 876, 918, 964, 1053
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 4 cut(s) 227, 239, 277, 292
BstMBI GATC 4 cut(s) 224, 236, 274, 289
BstMWI GCNNNNNNNGC 4 cut(s) 18, 90, 147, 970
BstNI CCWGG 1 cut(s) 1235
BstPAI GACNNNNGTC 1 cut(s) 1151
BstSCI CCNGG 1 cut(s) 1233
BstSFI CTRYAG 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 288
Bsu36I CCTNAGG 2 cut(s) 41, 467
BsuRI GGCC 9 cut(s) 163, 465, 493, 558, 705, 771, 1102, 1195, 1238
BsuTUI ATCGAT 1 cut(s) 288
BtrI CACGTC 2 cut(s) 242, 1183
BtsCI GGATG 4 cut(s) 876, 918, 964, 1053
BtsI GCAGTG 2 cut(s) 136, 968
BtsIMutI CAGTG 3 cut(s) 129, 136, 968
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 3 cut(s) 95, 165, 205
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 8 cut(s) 255, 491, 556, 703, 769, 1001, 1101, 1193
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 965
Csp6I GTAC 1 cut(s) 938
CviAII CATG 5 cut(s) 7, 85, 109, 1072, 1197
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 8 cut(s) 32, 41, 80, 113, 384, 467, 827, 1053
DinI GGCGCC 1 cut(s) 326
DpnI GATC 4 cut(s) 226, 238, 276, 291
DpnII GATC 4 cut(s) 224, 236, 274, 289
DriI GACNNNNNGTC 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 3 cut(s) 1010, 1019, 1177
Eam1105I GACNNNNNGTC 1 cut(s) 669
EarI CTCTTC 3 cut(s) 1010, 1019, 1177
Eco24I GRGCYC 1 cut(s) 353
Eco31I GGTCTC 2 cut(s) 191, 1174
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 255, 1001
Eco57I CTGAAG 1 cut(s) 317
Eco81I CCTNAGG 2 cut(s) 41, 467
Eco88I CYCGRG 4 cut(s) 679, 811, 850, 975
EcoO109I RGGNCCY 1 cut(s) 1001
EcoRII CCWGG 1 cut(s) 1233
EcoRV GATATC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 353
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
Esp3I CGTCTC 3 cut(s) 535, 601, 853
FaeI CATG 5 cut(s) 10, 88, 112, 1075, 1200
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 5 cut(s) 6, 84, 108, 1071, 1196
Fnu4HI GCNGC 2 cut(s) 37, 180
FokI GGATG 4 cut(s) 863, 905, 951, 1060
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 37, 180
FspBI CTAG 3 cut(s) 231, 822, 1240
GlaI GCGC 1 cut(s) 326
GluI GCNGC 2 cut(s) 37, 180
GsaI CCCAGC 2 cut(s) 639, 963
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 9 cut(s) 163, 465, 493, 558, 705, 771, 1102, 1195, 1238
HapII CCGG 1 cut(s) 322
HgaI GACGC 1 cut(s) 965
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 5 cut(s) 10, 88, 112, 1075, 1200
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 3 cut(s) 99, 188, 855
HpaII CCGG 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 136, 426
Hpy188III TCNNGA 4 cut(s) 145, 278, 852, 1120
Hpy8I GTNNAC 2 cut(s) 136, 426
Hpy99I CGWCG 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 133, 397
HpyCH4IV ACGT 3 cut(s) 241, 846, 1182
HpyCH4V TGCA 3 cut(s) 136, 141, 1007
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 90, 147, 970
HpyF3I CTNAG 8 cut(s) 32, 41, 80, 113, 384, 467, 827, 1053
HpySE526I ACGT 3 cut(s) 241, 846, 1182
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 5 cut(s) 10, 88, 112, 1075, 1200
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 4 cut(s) 224, 236, 274, 289
LmnI GCTCC 4 cut(s) 147, 356, 506, 837
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 5 cut(s) 150, 622, 885, 927, 973
MaeI CTAG 3 cut(s) 231, 822, 1240
MaeII ACGT 3 cut(s) 241, 846, 1182
MaeIII GTNAC 4 cut(s) 185, 886, 1144, 1183
MalI GATC 4 cut(s) 226, 238, 276, 291
MboI GATC 4 cut(s) 224, 236, 274, 289
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 3 cut(s) 138, 353, 1228
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 4 cut(s) 316, 359, 406, 1108
MluNI TGGCCA 1 cut(s) 163
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 252
Mox20I TGGCCA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 103
MscI TGGCCA 1 cut(s) 163
MseI TTAA 1 cut(s) 914
Msp20I TGGCCA 1 cut(s) 163
MspA1I CMGCKG 2 cut(s) 93, 167
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 1235
MvaI CCWGG 1 cut(s) 1235
MwoI GCNNNNNNNGC 4 cut(s) 18, 90, 147, 970
NarI GGCGCC 1 cut(s) 325
NdeII GATC 4 cut(s) 224, 236, 274, 289
NlaIII CATG 5 cut(s) 10, 88, 112, 1075, 1200
NlaIV GGNNCC 5 cut(s) 326, 352, 403, 833, 1103
NmuCI GTSAC 4 cut(s) 185, 886, 1144, 1183
PaeR7I CTCGAG 1 cut(s) 975
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 99, 855
PkrI GCNGC 2 cut(s) 38, 181
PleI GAGTC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 1001
PshAI GACNNNNGTC 1 cut(s) 1151
Psp5II RGGWCCY 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 1233
PspFI CCCAGC 2 cut(s) 635, 959
PspGI CCWGG 1 cut(s) 1233
PspN4I GGNNCC 5 cut(s) 326, 352, 403, 833, 1103
PspPI GGNCC 8 cut(s) 255, 491, 556, 703, 769, 1001, 1101, 1193
PspPPI RGGWCCY 1 cut(s) 1001
PspXI VCTCGAGB 1 cut(s) 975
PsuI RGATCY 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
SaqAI TTAA 1 cut(s) 914
SatI GCNGC 2 cut(s) 37, 180
Sau3AI GATC 4 cut(s) 224, 236, 274, 289
Sau96I GGNCC 8 cut(s) 255, 491, 556, 703, 769, 1001, 1101, 1193
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 1235
SduI GDGCHC 3 cut(s) 138, 353, 1228
SfaNI GCATC 5 cut(s) 150, 622, 885, 927, 973
SfcI CTRYAG 1 cut(s) 248
SfoI GGCGCC 1 cut(s) 326
Sfr274I CTCGAG 1 cut(s) 975
SinI GGWCC 2 cut(s) 255, 1001
SlaI CTCGAG 1 cut(s) 975
SmlI CTYRAG 1 cut(s) 975
SmoI CTYRAG 1 cut(s) 975
Sse9I AATT 4 cut(s) 316, 359, 406, 1108
SsiI CCGC 4 cut(s) 37, 91, 177, 201
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 3 cut(s) 231, 822, 1240
StyD4I CCNGG 1 cut(s) 1233
TaaI ACNGT 2 cut(s) 133, 397
TaiI ACGT 3 cut(s) 244, 849, 1185
TaqI TCGA 4 cut(s) 277, 288, 479, 976
TasI AATT 4 cut(s) 316, 359, 406, 1108
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 99, 855
Tru1I TTAA 1 cut(s) 914
Tru9I TTAA 1 cut(s) 914
TscAI CASTG 3 cut(s) 136, 143, 975
TseFI GTSAC 4 cut(s) 185, 886, 1144, 1183
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 4 cut(s) 185, 886, 1144, 1183
TspDTI ATGAA 2 cut(s) 101, 298
TspRI CASTG 3 cut(s) 136, 143, 975
VneI GTGCAC 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 255, 1001
XhoI CTCGAG 1 cut(s) 975
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 3 cut(s) 231, 822, 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.