MD12G1161200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0007226
Physical Location & Seq
Forward (+)
24181521 .. 24181904
384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1161200.v1.1.491

Sequence Viewer

Length: 384 bp
ATGCACATGGACAAGTGGTCTTTGCTGAGTCGCCTAAGGAAGGCCGTGAGGAAGGTAAGCTTCCTACTAAACCTCAACGTGAATCGCTGGCGAATTGTTTCGATGATCGGCCGTACTGTTTCTAGCAACCACCGATTGATGAGCTTCAACGACCACCCAGGGCTGAAAGTGGCGTGTGGCGATGAGACCAGCTCCGAGGAGCACTCGGGGTCTTCTAGGGGAAATCTTCAGAGGACAATAAGCTATCCATCGGATCAAGATGATATTGATCAAAGAGCAGAGATGTTCATAGCGAATTTCCGCCGCCAACTTCGGGTGGAGAGACAAATTTCGTTAGAGCTTCGGTATGGCAGAGGAAATAGTTTTGACTTGAAGTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

128

Amino Acids

14.75

Weight (kDa)

10.32

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 86 - 116 5.9e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 301, 304
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 295, 327
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 40, 313
AgsI TTSAA 2 cut(s) 148, 373
AhdI GACNNNNNGTC 2 cut(s) 16, 373
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 5 cut(s) 60, 144, 192, 243, 340
AluI AGCT 5 cut(s) 60, 144, 192, 243, 340
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 179, 316
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 42, 109
ApoI RAATTY 2 cut(s) 295, 327
Asp700I GAANNNNTTC 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 1 cut(s) 256
BceAI ACGGC 2 cut(s) 29, 96
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 179, 316
BfaI CTAG 2 cut(s) 123, 216
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 159
BmeRI GACNNNNNGTC 2 cut(s) 16, 373
BmeT110I CYCGRG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 188, 220
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 157, 158, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 313
Bse21I CCTNAGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 157, 158, 195
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 40, 313
BseMII CTCAG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 212
BseX3I CGGCCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 44, 111
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 40, 313
BsmAI GTCTC 2 cut(s) 179, 316
BsnI GGCC 2 cut(s) 44, 111
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 105, 253, 268
BspACI CCGC 2 cut(s) 301, 304
BspANI GGCC 2 cut(s) 44, 111
BspCNI CTCAG 1 cut(s) 18
BspPI GGATC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 157, 158, 195
BssMI GATC 3 cut(s) 105, 253, 268
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 26, 35
BstENI CCTNNNNNAGG 1 cut(s) 38
BstKTI GATC 3 cut(s) 108, 256, 271
BstMAI GTCTC 2 cut(s) 179, 316
BstMBI GATC 3 cut(s) 105, 253, 268
BstMCI CGRYCG 1 cut(s) 112
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 204
BstZI CGGCCG 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 2 cut(s) 44, 111
BtgZI GCGATG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 7
CviJI RGCY 8 cut(s) 44, 60, 111, 144, 163, 192, 243, 340
CviKI_1 RGCY 8 cut(s) 44, 60, 111, 144, 163, 192, 243, 340
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 26, 35
DpnI GATC 3 cut(s) 107, 255, 270
DpnII GATC 3 cut(s) 105, 253, 268
DriI GACNNNNNGTC 2 cut(s) 16, 373
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1105I GACNNNNNGTC 2 cut(s) 16, 373
EciI GGCGGA 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 290, 348
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 1 cut(s) 6
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 304
FspBI CTAG 2 cut(s) 123, 216
GluI GCNGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 44, 111
Hin1II CATG 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 2 cut(s) 28, 82
Hpy188I TCNGA 3 cut(s) 196, 231, 253
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 34, 46
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 26, 35
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 105, 253, 268
LmnI GCTCC 2 cut(s) 197, 199
LpnPI CCDG 4 cut(s) 73, 144, 171, 202
MaeI CTAG 2 cut(s) 123, 216
MaeII ACGT 1 cut(s) 78
MalI GATC 3 cut(s) 107, 255, 270
MboI GATC 3 cut(s) 105, 253, 268
MboII GAAGA 2 cut(s) 204, 218
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 3 cut(s) 93, 295, 327
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 5 cut(s) 42, 83, 190, 225, 347
MroXI GAANNNNTTC 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
NdeII GATC 3 cut(s) 105, 253, 268
NlaIII CATG 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 3 cut(s) 105, 253, 268
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 204
SetI ASST 8 cut(s) 57, 62, 75, 81, 146, 194, 245, 342
Sse9I AATT 3 cut(s) 93, 295, 327
SsiI CCGC 2 cut(s) 301, 304
SspMI CTAG 2 cut(s) 123, 216
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 93, 295, 327
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 277
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 295, 327
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 2 cut(s) 123, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.