Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007226

Physical Location & Seq

Genomic Coordinates Reverse (-)

6539460 .. 6539843

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G087800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGCATGGACAAGTGGTCTTTGCTAAGCCGCCTAAGGAACGCCGTGAAGAAGGTGAGCTTCCTACTACATCTCAACGTCAACCGCTGGCGAATCGCTTCGATGATCGGCCGTACTGCTTCGGGCAACCACCGGTTGAGGAGCTTCAACGACCGCCCGGGCCTGACGGCGGCGTGTGCTGATGATGAGACCAGCTCCGAGGATTCGGGGTCTTCTAGGGGACATCTCCAGAGGACTATAAGCTATCCCTCGGATCAAGATGATATTGATCAAAGAGCTGAGATGTTCATAGCTAATTTCCGCCGCCAACTTCAGATGGAAAGACAGATTTCATTAGAGCTTCGATATTGCAGAGGAAATAGTTTCGACTTGAAGTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

9.76

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57510
fragaria_vesca	FvH4_3g45900 FvH4_4g09360
malus_domestica	MD12G1161200.v1.1 MD13G1257600.v1.1
prunus_persica	Prupe.1G087800_v2.0.a1
pyrus_communis	pycom13g22090 pycom16g22060
rosa_chinensis	RchiOBHm_Chr4g0402691 RchiOBHm_Chr4g0402701
rosa_laevigata	RLG00000009053
rosa_multiflora	Rmu_sc0009850.1_g000001 Rmu_sc0009850.1_g000002 Rmu_sc0009851.1_g000001 Rmu_sc0009851.1_g000002
rosa_roxburghii	Rroxscaffold_5G00347430
rosa_rugosa	Rorug04G0037700
rosa_samantha	Rh4AG115300 Rh4BG107800 Rh4CG122100 Rh4CG122200 Rh4DG107600 Rh4DG107800
rosa_wichuraiana	Rw4G009190 Rw4G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	31, 85, 154, 170, 301, 304
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	148, 373
AhdI	GACNNNNNGTC	2 cut(s)	16, 373
AluBI	AGCT	7 cut(s)	60, 144, 195, 243, 278, 293, 340
AluI	AGCT	7 cut(s)	60, 144, 195, 243, 278, 293, 340
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	109, 160
AsiGI	ACCGGT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	2 cut(s)	158, 159
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	204
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	3 cut(s)	29, 96, 183
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	158, 159
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	31, 171, 304
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	32, 172, 305
Bme1390I	CCNGG	2 cut(s)	158, 159
BmeRI	GACNNNNNGTC	2 cut(s)	16, 373
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	158, 159
BpiI	GAAGAC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	158, 159
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	157, 198, 249
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	132
Bse21I	CCTNAGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	157, 198, 249
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	109
Bsh1285I	CGRYCG	2 cut(s)	112, 154
BshFI	GGCC	2 cut(s)	111, 162
BshTI	ACCGGT	1 cut(s)	132
BsiEI	CGRYCG	2 cut(s)	112, 154
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	133, 158
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	111, 162
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	105, 253, 268
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	31, 85, 154, 170, 301, 304
BspANI	GGCC	2 cut(s)	111, 162
BspCNI	CTCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	157, 198, 249
BssMI	GATC	3 cut(s)	105, 253, 268
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	26, 35, 279
BstKTI	GATC	3 cut(s)	108, 256, 271
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	105, 253, 268
BstMCI	CGRYCG	2 cut(s)	112, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	156, 157
BstV2I	GAAGAC	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	111, 162
Cac8I	GCNNGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	160
Cfr9I	CCCGGG	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	114
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	3 cut(s)	26, 35, 279
DpnI	GATC	3 cut(s)	107, 255, 270
DpnII	GATC	3 cut(s)	105, 253, 268
DriI	GACNNNNNGTC	2 cut(s)	16, 373
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Eam1105I	GACNNNNNGTC	2 cut(s)	16, 373
EciI	GGCGGA	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	296
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	157
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 239, 290
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	31, 171, 304
Fsp4HI	GCNGC	3 cut(s)	31, 171, 304
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	3 cut(s)	31, 171, 304
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	111, 162
HapII	CCGG	2 cut(s)	133, 158
Hin1II	CATG	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	93, 203
HpaII	CCGG	2 cut(s)	133, 158
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	199, 253, 315
Hpy188III	TCNNGA	2 cut(s)	229, 257
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	26, 35, 279
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	105, 253, 268
LmnI	GCTCC	2 cut(s)	141, 200
LpnPI	CCDG	6 cut(s)	73, 146, 171, 176, 205, 242
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	78
MalI	GATC	3 cut(s)	107, 255, 270
MboI	GATC	3 cut(s)	105, 253, 268
MboII	GAAGA	2 cut(s)	61, 204
MluCI	AATT	1 cut(s)	295
MnlI	CCTC	5 cut(s)	132, 193, 225, 259, 347
MroXI	GAANNNNTTC	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	2 cut(s)	133, 158
MspR9I	CCNGG	2 cut(s)	158, 159
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	2 cut(s)	158, 159
NdeII	GATC	3 cut(s)	105, 253, 268
NlaIII	CATG	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	93, 203
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	32, 172, 305
PspPI	GGNCC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SatI	GCNGC	3 cut(s)	31, 171, 304
Sau3AI	GATC	3 cut(s)	105, 253, 268
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	158, 159
SetI	ASST	9 cut(s)	57, 62, 81, 146, 197, 245, 280, 295, 342
SmaI	CCCGGG	1 cut(s)	159
SrfI	GCCCGGGC	1 cut(s)	159
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	6 cut(s)	31, 85, 154, 170, 301, 304
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	156, 157
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	101, 343, 366
TasI	AATT	1 cut(s)	295
TauI	GCSGC	3 cut(s)	33, 173, 306
TfiI	GAWTC	2 cut(s)	93, 203
TspDTI	ATGAA	2 cut(s)	277, 321
TspMI	CCCGGG	1 cut(s)	157
XmaI	CCCGGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.