FvH4_4g09360

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007226
Physical Location & Seq
Forward (+)
11085396 .. 11086356
961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09360.t1

Sequence Viewer

Length: 399 bp
ATGAGCAACAACAACAGCTGGTATTTGCTGAGCCGCCTAAGGAGGGCTGTGAAGAAGGTAAGCTTTCTCCTAAATCTCAACGTGAACCGCTGGCAAATCGCCTCCATGCTCAGCCGTTCTTCTTCCGCTGTACACCGCATAAGGAGCTTCAACGACCGGTCAGCTGGACTGACCGCAGCCTGTGATTCCGATGAGAACTCGGAGGAGGATTCTGTGTCTTCTAGGGGATCATCACGTCATCTTCAGAGAACCATAAGCTACCCGTCGGATCAAGATGATATCGATCAGAGAGCTGAGATGTTCATAGCTAATTTCCGCCGCCAACTTCAGATTGAAAGGCAAGTCTCTTTGGAGCTGAGATACTGCAGAGGAAATAGTTTAGATATGGTATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

133

Amino Acids

15.22

Weight (kDa)

9.57

Isoelectric Point (pI)

78.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 91 - 122 8.5e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 34, 88, 126, 136, 174, 316, 319
AclWI GGATC 2 cut(s) 235, 276
AcuI CTGAAG 2 cut(s) 227, 311
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 43
AgeI ACCGGT 1 cut(s) 156
AgsI TTSAA 2 cut(s) 151, 335
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 8 cut(s) 18, 63, 147, 164, 258, 293, 308, 355
AluI AGCT 8 cut(s) 18, 63, 147, 164, 258, 293, 308, 355
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 235, 276
ApeKI GCWGC 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 156
AxyI CCTNAGG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 364
BisI GCNGC 3 cut(s) 34, 177, 319
BlpI GCTNAGC 2 cut(s) 29, 110
BlsI GCNGC 3 cut(s) 35, 178, 320
BmgBI CACGTC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 210
Bpu1102I GCTNAGC 2 cut(s) 29, 110
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 156
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 4 cut(s) 20, 124, 285, 347
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 349
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 227, 268, 283
Bsp1720I GCTNAGC 2 cut(s) 29, 110
BspACI CCGC 7 cut(s) 34, 88, 126, 136, 174, 316, 319
BspCNI CTCAG 4 cut(s) 21, 123, 286, 348
BspDI ATCGAT 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 368
BspPI GGATC 2 cut(s) 235, 276
BsrFI RCCGGY 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 156
BssMI GATC 3 cut(s) 227, 268, 283
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 5 cut(s) 29, 38, 110, 294, 356
BstKTI GATC 3 cut(s) 230, 271, 286
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 227, 268, 283
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 282
BtrI CACGTC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 1 cut(s) 131
CspAI ACCGGT 1 cut(s) 156
CviAII CATG 1 cut(s) 106
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 5 cut(s) 29, 38, 110, 294, 356
DpnI GATC 3 cut(s) 229, 270, 285
DpnII GATC 3 cut(s) 227, 268, 283
EciI GGCGGA 1 cut(s) 305
Eco32I GATATC 1 cut(s) 280
Eco57I CTGAAG 2 cut(s) 227, 311
Eco81I CCTNAGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 280
FaeI CATG 1 cut(s) 109
FaiI YATR 5 cut(s) 107, 140, 254, 305, 386
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 34, 177, 319
Fsp4HI GCNGC 3 cut(s) 34, 177, 319
FspBI CTAG 1 cut(s) 222
GluI GCNGC 3 cut(s) 34, 177, 319
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 185, 209
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 85, 133
Hpy188I TCNGA 6 cut(s) 190, 202, 246, 268, 288, 330
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 85, 133
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 81, 235
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 5 cut(s) 29, 38, 110, 294, 356
HpySE526I ACGT 2 cut(s) 81, 235
Hsp92II CATG 1 cut(s) 109
Kzo9I GATC 3 cut(s) 227, 268, 283
LmnI GCTCC 2 cut(s) 144, 352
LpnPI CCDG 5 cut(s) 4, 76, 150, 170, 193
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 222
MaeII ACGT 2 cut(s) 81, 235
MalI GATC 3 cut(s) 229, 270, 285
MboI GATC 3 cut(s) 227, 268, 283
MboII GAAGA 5 cut(s) 64, 111, 114, 210, 233
MluCI AATT 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 36, 112, 196, 199, 362
MspA1I CMGCKG 4 cut(s) 18, 90, 128, 164
MspI CCGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 3 cut(s) 227, 268, 283
NlaIII CATG 1 cut(s) 109
PfeI GAWTC 2 cut(s) 185, 209
PinAI ACCGGT 1 cut(s) 156
PkrI GCNGC 3 cut(s) 35, 178, 320
PstI CTGCAG 1 cut(s) 368
PvuII CAGCTG 2 cut(s) 18, 164
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SatI GCNGC 3 cut(s) 34, 177, 319
Sau3AI GATC 3 cut(s) 227, 268, 283
SfcI CTRYAG 1 cut(s) 364
Sse9I AATT 1 cut(s) 310
SsiI CCGC 7 cut(s) 34, 88, 126, 136, 174, 316, 319
SspMI CTAG 1 cut(s) 222
TaiI ACGT 2 cut(s) 84, 238
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 310
TatI WGTACW 1 cut(s) 130
TauI GCSGC 2 cut(s) 36, 321
TfiI GAWTC 2 cut(s) 185, 209
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 292
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.