pycom13g22090

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0007226
Physical Location & Seq
Reverse (-)
19200665 .. 19201048
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g22090.1

Sequence Viewer

Length: 384 bp
ATGAAGATGGACAAGTGGTCTTTATTAAGCCGCCTTAGGAAGGCCGTGAAGAAGGTAAGCTTACTACTGAACCTCAACGTGAGTCGCTGGCGAATCGCTTCGGTGATCGGCCGTACTATTTCTGGCAACCACCGGTTGATGAGCTTCAATGGCTGCCCGGGGCTGAGAGCGGCTTGTACCGATGAGAACAGCTCCGAGGAGGACTCGGGGTCTTCTAGGGGACATCTTCAGAGGAACATAAGCTATCCATCGGATCAAGATGATATTGACCAAAGAGCAGAGATGTTCATAGCGAATTTCCGCCGCCAACTTCAGGTGGAGAGGCAAATTTCGTTGGAGCTTCGGTATTGCAGAGAAAATAGTTTTGACTTGAAGTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

128

Amino Acids

14.65

Weight (kDa)

9.65

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 86 - 117 2.7e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 4 cut(s) 31, 170, 301, 304
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 295, 327
AcuI CTGAAG 2 cut(s) 212, 296
AfaI GTAC 2 cut(s) 115, 178
AfiI CCNNNNNNNGG 2 cut(s) 40, 313
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 148, 373
AhdI GACNNNNNGTC 3 cut(s) 16, 208, 373
AluBI AGCT 5 cut(s) 60, 144, 192, 243, 340
AluI AGCT 5 cut(s) 60, 144, 192, 243, 340
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 2 cut(s) 157, 205
AoxI GGCC 2 cut(s) 42, 109
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 295, 327
AsiGI ACCGGT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 97
AsuC2I CCSGG 2 cut(s) 158, 159
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 2 cut(s) 157, 205
AxyI CCTNAGG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 256
BceAI ACGGC 2 cut(s) 29, 96
BcnI CCSGG 2 cut(s) 158, 159
BfaI CTAG 1 cut(s) 216
BisI GCNGC 4 cut(s) 31, 154, 171, 304
BlsI GCNGC 4 cut(s) 32, 155, 172, 305
Bme1390I CCNGG 2 cut(s) 158, 159
BmeRI GACNNNNNGTC 3 cut(s) 16, 208, 373
BmeT110I CYCGRG 2 cut(s) 157, 205
BmrFI CCNGG 2 cut(s) 158, 159
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 188, 220
BpuMI CCSGG 2 cut(s) 158, 159
BsaJI CCNNGG 3 cut(s) 157, 158, 195
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 313
Bse118I RCCGGY 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 157, 158, 195
BseLI CCNNNNNNNGG 2 cut(s) 40, 313
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 212
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 44, 111
BshTI ACCGGT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 112
BsiHKCI CYCGRG 2 cut(s) 157, 205
BsiSI CCGG 2 cut(s) 133, 158
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 40, 313
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 44, 111
BsoBI CYCGRG 2 cut(s) 157, 205
Bsp143I GATC 2 cut(s) 105, 253
BspACI CCGC 4 cut(s) 31, 170, 301, 304
BspANI GGCC 2 cut(s) 44, 111
BspCNI CTCAG 1 cut(s) 156
BspPI GGATC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 157, 158, 195
BssMI GATC 2 cut(s) 105, 253
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 35, 164
BstENI CCTNNNNNAGG 1 cut(s) 38
BstKTI GATC 2 cut(s) 108, 256
BstMBI GATC 2 cut(s) 105, 253
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 156, 157
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 204
BstZI CGGCCG 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 2 cut(s) 44, 111
Cac8I GCNNGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 157
Csp6I GTAC 2 cut(s) 114, 177
CspAI ACCGGT 1 cut(s) 132
CviQI GTAC 2 cut(s) 114, 177
DdeI CTNAG 2 cut(s) 35, 164
DpnI GATC 2 cut(s) 107, 255
DpnII GATC 2 cut(s) 105, 253
DriI GACNNNNNGTC 3 cut(s) 16, 208, 373
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1105I GACNNNNNGTC 3 cut(s) 16, 208, 373
EciI GGCGGA 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 109
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 212, 296
Eco81I CCTNAGG 1 cut(s) 35
Eco88I CYCGRG 2 cut(s) 157, 205
EcoNI CCTNNNNNAGG 1 cut(s) 38
FaiI YATR 2 cut(s) 239, 290
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 234
Fnu4HI GCNGC 4 cut(s) 31, 154, 171, 304
Fsp4HI GCNGC 4 cut(s) 31, 154, 171, 304
FspBI CTAG 1 cut(s) 216
GluI GCNGC 4 cut(s) 31, 154, 171, 304
HaeIII GGCC 2 cut(s) 44, 111
HapII CCGG 2 cut(s) 133, 158
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 3 cut(s) 82, 93, 203
HpaII CCGG 2 cut(s) 133, 158
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 196, 231, 253
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 34, 46
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 35, 164
HpySE526I ACGT 1 cut(s) 78
Kzo9I GATC 2 cut(s) 105, 253
LmnI GCTCC 2 cut(s) 197, 337
LpnPI CCDG 5 cut(s) 73, 108, 146, 171, 299
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 78
MalI GATC 2 cut(s) 107, 255
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 105, 253
MboII GAAGA 4 cut(s) 16, 61, 204, 218
MluCI AATT 2 cut(s) 295, 327
MlyI GAGTC 2 cut(s) 91, 197
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 83, 190, 193, 225, 315
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 1 cut(s) 26
MspI CCGG 2 cut(s) 133, 158
MspR9I CCNGG 2 cut(s) 158, 159
MwoI GCNNNNNNNGC 1 cut(s) 150
NciI CCSGG 2 cut(s) 158, 159
NdeII GATC 2 cut(s) 105, 253
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 93
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 4 cut(s) 32, 155, 172, 305
PleI GAGTC 2 cut(s) 90, 197
PpsI GAGTC 2 cut(s) 90, 197
RsaI GTAC 2 cut(s) 115, 178
RsaNI GTAC 2 cut(s) 114, 177
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 4 cut(s) 31, 154, 171, 304
Sau3AI GATC 2 cut(s) 105, 253
SchI GAGTC 2 cut(s) 91, 197
ScrFI CCNGG 2 cut(s) 158, 159
SetI ASST 9 cut(s) 57, 62, 75, 81, 146, 194, 245, 318, 342
SmaI CCCGGG 1 cut(s) 159
Sse9I AATT 2 cut(s) 295, 327
SsiI CCGC 4 cut(s) 31, 170, 301, 304
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 156, 157
TaiI ACGT 1 cut(s) 81
TasI AATT 2 cut(s) 295, 327
TauI GCSGC 3 cut(s) 33, 173, 306
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 17, 277
TspMI CCCGGG 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 295, 327
XmaI CCCGGG 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.