AT5G58080
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
23501605 .. 23504169
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58080.1

Sequence Viewer

Length: 1908 bp
ATGGAGTTTGGAAGCACTGAAGATGGAAGGCATGACAAGTTTCCTGTAGGAATGAGGGTTCTTGCTGTGGATGACAATCCAACCTGCCTTCGGAAACTCGAAGAGTTGCTGCTTCGTTGCAAGTATCATGTGACAAAGACAATGGAGTCGAGGAAAGCTCTGGAAATGCTGAGAGAAAACAGCAACATGTTTGATCTGGTGATAAGCGATGTAGAGATGCCAGACACGGATGGTTTTAAGTTGCTTGAAATTGGTCTTGAAATGGACCTTCCTGTCATCATGTTGTCAGCTCATAGCGACTATGACAGCGTTATGAAAGGTATTATACATGGCGCTTGCGATTATCTGGTCAAGCCTGTTGGACTCAAGGAGCTTCAGAATATATGGCATCATGTTGTGAAGAAGAACATTAAATCTTACGCAAAACTGCTCCCACCTTCTGAATCTGATTCCGTCCCAAGCGCCAGCAGGAAACGGAAAGACAAAGTCAATGACAGTGGTGATGAAGATGACAGTGACAGAGAAGAGGATGATGGTGAGGGGAGTGAACAGGATGGTGACGGGTCAGGTACGCGGAAGAAGCCACGTGTTGTTTGGTCTCAGGAGCTTCACCAGAAGTTTGTCAGTGCCGTTCAGCAATTGGGCCTCGACAAGGCTGTTCCCAAAAAAATACTTGATCTCATGAGTATAGAAGGTCTCACTAGGGAAAACGTAGCCAGTCATTTGCAGAAGTACAGACTGTACTTGAAAAAGATAGACGAAGGTCAGCAGCAAAATATGACCCCAGATGCATTTGGAACAAGAGATTCATCTTACTTTCAGATGGCTCAACTTGATGGACTTAGAGATTTTACTGCCGCAAGACAAATTCCAAGCTCAGGACTCTTATCGCGTTCCCATCTCACCAAACTCCAACCCCCTATGTATTCATCGATAAATCTCCAAGGAATGAACTCCTCCAGCTTCATCCAACAGGGGCATCACCAGAACTCAAGCAATTCAGCTAATCCGTTTGGAACATATCACAGTACTCTGTCACCAAGAATCCAGAACGTGAATCTGTTTCAGCGAACTTCATCTCCACTAGAACCCCTCCAGTTTCCTAGAAGCAAGTCATACATTGGAGATTTTAAAGGCTTAGGGGACAGAGCTATTGGCGGTAGCTTCCTAGATACTTGTATGCCATTTGGTAGCTCTAGCACCTCTTTACCAAGTGCTTCCACCAATCCTCTAATGTTGCAAGCAAACTATACACAACCCCTGCATATAGCCTCAGATGGAATTCAGCCTTGCATCGAGGGAACTCCGTCCAACTCTGCCTCCCCAAACATCAGTTTCCAAGGCTTATCTAGATTTCCTGGTCATAGCTGGCAAGGGAATTTGAACACAACCAGATTCCCACCGAGTTCCTTACCACTAAATCTTGCTTTCTTGCCGGATCAAGTGACATGTGCAGGGAACAATCTGGGAGATTGTACTTCTTTGGTTTCTGCAGAGAATCCTGGTGGAGAGATGCAGTGTGATCCTCAATTACTTGGCGGCTTCATGCAGAACGTGAATCCGTTAGGCGGACAGAAATGGGAGCAACAGAACTGCACCATGCTGAACAATCCATTCGGTAACATTGAGTATCCTCTACCCGCAGATAACATGGTTTTCAGAGACAACAATTCAACCAGAAGCAAAGGCTTGGATGAGTCACTGATGAACCCAATAGACAACAGTCAAGAGTATGTTGGAAAAGCTACTACAATGCTGGATCCAGAGATGAAGTCGGGAAAGCCAGAGAATGACAACCAGCATGATGTATTCGATGACATAATGAATGAGATGATGAAACAGGAGGAGAATAACGGAATGGTGCCAGTGGCTACTAGATTTGGCTTTGATTCATTTCCTCCACCTTAG

Protein Analysis

635

Amino Acids

70.41

Weight (kDa)

5.21

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 20 - 127 3.2e-21 Response regulator receiver domain
Myb_DNA-binding PF00249 196 - 246 3.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 145, 272
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 1861
AccII CGCG 2 cut(s) 574, 892
AciI CCGC 6 cut(s) 574, 858, 1158, 1539, 1569, 1641
AclWI GGATC 4 cut(s) 1446, 1517, 1754, 1767
AcsI RAATTY 3 cut(s) 867, 1281, 1378
AcuI CTGAAG 2 cut(s) 39, 359
AcvI CACGTG 1 cut(s) 587
AfaI GTAC 5 cut(s) 571, 734, 743, 1030, 1477
AfiI CCNNNNNNNGG 4 cut(s) 90, 652, 878, 1568
AflIII ACRYGT 3 cut(s) 186, 586, 1448
AgsI TTSAA 5 cut(s) 248, 260, 748, 1384, 1674
AjnI CCWGG 2 cut(s) 1357, 1501
AloI GAACNNNNNNTCC 4 cut(s) 42, 74, 1063, 1095
Alw26I GTCTC 3 cut(s) 603, 701, 1656
AlwI GGATC 4 cut(s) 1446, 1517, 1754, 1767
AoxI GGCC 1 cut(s) 643
ApeKI GCWGC 2 cut(s) 109, 769
ApoI RAATTY 3 cut(s) 867, 1281, 1378
AspLEI GCGC 2 cut(s) 335, 464
AspS9I GGNCC 2 cut(s) 265, 643
AsuHPI GGTGA 8 cut(s) 211, 512, 548, 569, 602, 895, 974, 1029
AvaII GGWCC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 1759
BanI GGYRCC 1 cut(s) 1861
BbrPI CACGTG 1 cut(s) 587
BbvI GCAGC 2 cut(s) 96, 781
BccI CCATC 8 cut(s) 17, 224, 527, 548, 817, 830, 906, 1271
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 1359, 1503
BciVI GTATCC 1 cut(s) 1641
BcoDI GTCTC 3 cut(s) 603, 701, 1656
BfaI CTAG 7 cut(s) 702, 1085, 1104, 1169, 1197, 1350, 1875
BfmI CTRYAG 2 cut(s) 45, 1491
BfoI RGCGCY 2 cut(s) 336, 465
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 1641
BisI GCNGC 4 cut(s) 110, 770, 858, 1540
BlsI GCNGC 4 cut(s) 111, 771, 859, 1541
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 1359, 1503
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 265, 643
BmiI GGNNCC 2 cut(s) 1761, 1863
BmrFI CCNGG 2 cut(s) 1359, 1503
BmsI GCATC 6 cut(s) 207, 397, 778, 988, 1302, 1503
BoxI GACNNNNGTC 2 cut(s) 762, 1722
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 2 cut(s) 943, 1079
Bpu10I CCTNAGC 2 cut(s) 877, 1138
BpuEI CTTGAG 2 cut(s) 350, 976
Bsa29I ATCGAT 1 cut(s) 932
BsaAI YACGTR 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 603, 701
BsaJI CCNNGG 2 cut(s) 943, 1339
BsaXI ACNNNNNCTCC 4 cut(s) 1063, 1093, 1304, 1334
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 652, 878, 1568
Bse1I ACTGG 3 cut(s) 717, 1096, 1865
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 1359, 1503
BseCI ATCGAT 1 cut(s) 932
BseDI CCNNGG 2 cut(s) 943, 1339
BseGI GGATG 6 cut(s) 76, 235, 535, 559, 966, 1699
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 4 cut(s) 90, 652, 878, 1568
BseMII CTCAG 4 cut(s) 161, 614, 891, 1287
BseNI ACTGG 3 cut(s) 717, 1096, 1865
BseRI GAGGAG 2 cut(s) 946, 1859
BseXI GCAGC 2 cut(s) 96, 781
BsgI GTGCAG 2 cut(s) 1473, 1579
Bsh1236I CGCG 2 cut(s) 574, 892
BshFI GGCC 1 cut(s) 645
BshNI GGYRCC 1 cut(s) 1861
BshVI ATCGAT 1 cut(s) 932
BsiSI CCGG 1 cut(s) 1436
BslFI GGGAC 2 cut(s) 440, 1157
BslI CCNNNNNNNGG 4 cut(s) 90, 652, 878, 1568
BsmAI GTCTC 3 cut(s) 603, 701, 1656
BsmFI GGGAC 2 cut(s) 440, 1157
BsnI GGCC 1 cut(s) 645
Bso31I GGTCTC 2 cut(s) 603, 701
Bsp143I GATC 5 cut(s) 193, 676, 1438, 1522, 1759
BspACI CCGC 6 cut(s) 574, 858, 1158, 1539, 1569, 1641
BspANI GGCC 1 cut(s) 645
BspCNI CTCAG 4 cut(s) 162, 613, 890, 1286
BspDI ATCGAT 1 cut(s) 932
BspFNI CGCG 2 cut(s) 574, 892
BspHI TCATGA 1 cut(s) 681
BspLI GGNNCC 2 cut(s) 1761, 1863
BspMAI CTGCAG 1 cut(s) 1495
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 4 cut(s) 1446, 1517, 1754, 1767
BspT107I GGYRCC 1 cut(s) 1861
BspTNI GGTCTC 2 cut(s) 603, 701
BsrI ACTGG 3 cut(s) 717, 1096, 1865
BssECI CCNNGG 2 cut(s) 943, 1339
BssMI GATC 5 cut(s) 193, 676, 1438, 1522, 1759
BssT1I CCWWGG 2 cut(s) 943, 1339
Bst2UI CCWGG 2 cut(s) 1359, 1503
Bst4CI ACNGT 5 cut(s) 497, 515, 741, 1028, 1724
Bst6I CTCTTC 2 cut(s) 96, 519
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 4 cut(s) 337, 466, 1242, 1370
BstDEI CTNAG 7 cut(s) 170, 600, 842, 877, 1138, 1273, 1905
BstENI CCTNNNNNAGG 1 cut(s) 650
BstF5I GGATG 6 cut(s) 76, 235, 535, 559, 966, 1699
BstFNI CGCG 2 cut(s) 574, 892
BstH2I RGCGCY 2 cut(s) 336, 465
BstHHI GCGC 2 cut(s) 335, 464
BstKTI GATC 5 cut(s) 196, 679, 1441, 1525, 1762
BstMAI GTCTC 3 cut(s) 603, 701, 1656
BstMBI GATC 5 cut(s) 193, 676, 1438, 1522, 1759
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 2 cut(s) 1359, 1503
BstNSI RCATGY 2 cut(s) 190, 1452
BstPAI GACNNNNGTC 2 cut(s) 762, 1722
BstSCI CCNGG 2 cut(s) 1357, 1501
BstSFI CTRYAG 2 cut(s) 45, 1491
BstUI CGCG 2 cut(s) 574, 892
BstV1I GCAGC 2 cut(s) 96, 781
BstX2I RGATCY 1 cut(s) 1759
BstYI RGATCY 1 cut(s) 1759
Bsu15I ATCGAT 1 cut(s) 932
BsuI GTATCC 1 cut(s) 1641
BsuRI GGCC 1 cut(s) 645
BsuTUI ATCGAT 1 cut(s) 932
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 6 cut(s) 76, 235, 535, 559, 966, 1699
BtsI GCAGTG 1 cut(s) 1523
BtsIMutI CAGTG 7 cut(s) 15, 502, 520, 631, 1523, 1700, 1872
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 4 cut(s) 337, 466, 1242, 1370
CciI TCATGA 1 cut(s) 681
CfoI GCGC 2 cut(s) 335, 464
Cfr13I GGNCC 2 cut(s) 265, 643
ClaI ATCGAT 1 cut(s) 932
Csp6I GTAC 5 cut(s) 570, 733, 742, 1029, 1476
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviQI GTAC 5 cut(s) 570, 733, 742, 1029, 1476
DdeI CTNAG 7 cut(s) 170, 600, 842, 877, 1138, 1273, 1905
DpnI GATC 5 cut(s) 195, 678, 1440, 1524, 1761
DpnII GATC 5 cut(s) 193, 676, 1438, 1522, 1759
DraI TTTAAA 1 cut(s) 1132
DrdI GACNNNNNNGTC 2 cut(s) 145, 272
DseDI GACNNNNNNGTC 2 cut(s) 145, 272
Eam1104I CTCTTC 2 cut(s) 96, 519
EarI CTCTTC 2 cut(s) 96, 519
EciI GGCGGA 1 cut(s) 1584
Eco130I CCWWGG 2 cut(s) 943, 1339
Eco31I GGTCTC 2 cut(s) 603, 701
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 39, 359
Eco72I CACGTG 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 1281
EcoRII CCWGG 2 cut(s) 1357, 1501
EcoT14I CCWWGG 2 cut(s) 943, 1339
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 2 cut(s) 943, 1339
FaqI GGGAC 2 cut(s) 440, 1157
FauI CCCGC 1 cut(s) 1648
Fnu4HI GCNGC 4 cut(s) 110, 770, 858, 1540
FokI GGATG 6 cut(s) 83, 242, 542, 566, 953, 1706
Fsp4HI GCNGC 4 cut(s) 110, 770, 858, 1540
FspBI CTAG 7 cut(s) 702, 1085, 1104, 1169, 1197, 1350, 1875
GlaI GCGC 2 cut(s) 334, 463
GluI GCNGC 4 cut(s) 110, 770, 858, 1540
GsuI CTGGAG 2 cut(s) 943, 1079
HaeII RGCGCY 2 cut(s) 336, 465
HaeIII GGCC 1 cut(s) 645
HapII CCGG 1 cut(s) 1436
HhaI GCGC 2 cut(s) 335, 464
Hin6I GCGC 2 cut(s) 333, 462
HinP1I GCGC 2 cut(s) 333, 462
HpaII CCGG 1 cut(s) 1436
HphI GGTGA 8 cut(s) 211, 512, 548, 569, 602, 895, 974, 1029
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 7 cut(s) 93, 378, 442, 448, 822, 1276, 1661
Hpy8I GTNNAC 1 cut(s) 548
HpyAV CCTTC 6 cut(s) 21, 98, 278, 447, 686, 755
HpyCH4III ACNGT 5 cut(s) 497, 515, 741, 1028, 1724
HpyCH4IV ACGT 4 cut(s) 586, 711, 1053, 1554
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 7 cut(s) 170, 600, 842, 877, 1138, 1273, 1905
HpySE526I ACGT 4 cut(s) 586, 711, 1053, 1554
HspAI GCGC 2 cut(s) 333, 462
Kzo9I GATC 5 cut(s) 193, 676, 1438, 1522, 1759
LmnI GCTCC 4 cut(s) 370, 435, 604, 1582
Lsp1109I GCAGC 2 cut(s) 96, 781
LweI GCATC 6 cut(s) 207, 397, 778, 988, 1302, 1503
MaeI CTAG 7 cut(s) 702, 1085, 1104, 1169, 1197, 1350, 1875
MaeII ACGT 4 cut(s) 586, 711, 1053, 1554
MaeIII GTNAC 7 cut(s) 130, 515, 557, 1035, 1444, 1619, 1698
MalI GATC 5 cut(s) 195, 678, 1440, 1524, 1761
MboI GATC 5 cut(s) 193, 676, 1438, 1522, 1759
MboII GAAGA 7 cut(s) 32, 113, 412, 415, 518, 536, 589
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 1759
MluCI AATT 8 cut(s) 249, 638, 867, 997, 1281, 1378, 1529, 1669
MlyI GAGTC 4 cut(s) 155, 357, 876, 1706
MmeI TCCRAC 6 cut(s) 104, 340, 937, 994, 1335, 1717
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 3 cut(s) 237, 411, 1131
MspI CCGG 1 cut(s) 1436
MspR9I CCNGG 2 cut(s) 1359, 1503
MunI CAATTG 1 cut(s) 638
MvaI CCWGG 2 cut(s) 1359, 1503
MvnI CGCG 2 cut(s) 574, 892
MwoI GCNNNNNNNGC 1 cut(s) 580
NdeII GATC 5 cut(s) 193, 676, 1438, 1522, 1759
NlaIV GGNNCC 2 cut(s) 1761, 1863
NmuCI GTSAC 6 cut(s) 130, 515, 557, 1035, 1444, 1698
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 2 cut(s) 190, 1452
PagI TCATGA 1 cut(s) 681
PciI ACATGT 2 cut(s) 186, 1448
PfeI GAWTC 9 cut(s) 443, 449, 806, 1044, 1057, 1395, 1498, 1558, 1889
PflFI GACNNNGTC 1 cut(s) 485
PkrI GCNGC 4 cut(s) 111, 771, 859, 1541
PleI GAGTC 4 cut(s) 154, 357, 876, 1705
PmaCI CACGTG 1 cut(s) 587
PmlI CACGTG 1 cut(s) 587
PpsI GAGTC 4 cut(s) 154, 357, 876, 1705
Ppu21I YACGTR 1 cut(s) 587
PscI ACATGT 2 cut(s) 186, 1448
PshAI GACNNNNGTC 2 cut(s) 762, 1722
Psp6I CCWGG 2 cut(s) 1357, 1501
PspCI CACGTG 1 cut(s) 587
PspGI CCWGG 2 cut(s) 1357, 1501
PspN4I GGNNCC 2 cut(s) 1761, 1863
PspPI GGNCC 2 cut(s) 265, 643
PstI CTGCAG 1 cut(s) 1495
PsuI RGATCY 1 cut(s) 1759
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 5 cut(s) 571, 734, 743, 1030, 1477
RsaNI GTAC 5 cut(s) 570, 733, 742, 1029, 1476
SaqAI TTAA 3 cut(s) 237, 411, 1131
SatI GCNGC 4 cut(s) 110, 770, 858, 1540
Sau3AI GATC 5 cut(s) 193, 676, 1438, 1522, 1759
Sau96I GGNCC 2 cut(s) 265, 643
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 4 cut(s) 155, 357, 876, 1706
ScrFI CCNGG 2 cut(s) 1359, 1503
SfaNI GCATC 6 cut(s) 207, 397, 778, 988, 1302, 1503
SfcI CTRYAG 2 cut(s) 45, 1491
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 2 cut(s) 365, 991
SmoI CTYRAG 2 cut(s) 365, 991
Sse9I AATT 8 cut(s) 249, 638, 867, 997, 1281, 1378, 1529, 1669
SsiI CCGC 6 cut(s) 574, 858, 1158, 1539, 1569, 1641
SspMI CTAG 7 cut(s) 702, 1085, 1104, 1169, 1197, 1350, 1875
StyD4I CCNGG 2 cut(s) 1357, 1501
StyI CCWWGG 2 cut(s) 943, 1339
TaaI ACNGT 5 cut(s) 497, 515, 741, 1028, 1724
TaiI ACGT 4 cut(s) 589, 714, 1056, 1557
TaqI TCGA 6 cut(s) 99, 149, 648, 932, 1296, 1812
TasI AATT 8 cut(s) 249, 638, 867, 997, 1281, 1378, 1529, 1669
TatI WGTACW 4 cut(s) 732, 741, 1028, 1475
TauI GCSGC 2 cut(s) 860, 1542
TfiI GAWTC 9 cut(s) 443, 449, 806, 1044, 1057, 1395, 1498, 1558, 1889
Tru1I TTAA 3 cut(s) 237, 411, 1131
Tru9I TTAA 3 cut(s) 237, 411, 1131
TscAI CASTG 7 cut(s) 22, 502, 520, 631, 1523, 1707, 1872
TseFI GTSAC 6 cut(s) 130, 515, 557, 1035, 1444, 1698
TseI GCWGC 2 cut(s) 109, 769
Tsp45I GTSAC 6 cut(s) 130, 515, 557, 1035, 1444, 1698
TspGWI ACGGA 7 cut(s) 242, 442, 490, 999, 1296, 1551, 1869
TspRI CASTG 7 cut(s) 22, 502, 520, 631, 1523, 1707, 1872
Tth111I GACNNNGTC 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 650
XapI RAATTY 3 cut(s) 867, 1281, 1378
XbaI TCTAGA 1 cut(s) 1349
XceI RCATGY 2 cut(s) 190, 1452
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XspI CTAG 7 cut(s) 702, 1085, 1104, 1169, 1197, 1350, 1875
ZrmI AGTACT 1 cut(s) 1030
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.