FvH4_6g29050
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
22411162 .. 22414221
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29050.t1

Sequence Viewer

Length: 1833 bp
ATGGATGCTAGAGACCAACTAGGAGGTTCTGTTGGGGATCAGAATGGGGAGATGGATCGGTTTCCGGATGGTATGCGTGTCCTGGCTGTTGATGACGACGTAACTTACCTCAAAATCTTGGAGGCTTCCTTACGTAAATGCAATTATGAAGTAACTACCGTCAATCAAGCAAAGCAGGCACTCGAAATTCTAAGGGAAAACAAAAACAAGTTTGACCTGGTAATCAGTGATGTATGGATGCCGGAGATGAATGGCTTTCAGCTCCTCCAGCAGTTAGCGCACGAAATGGACCTACCTGTAGTCATGGTGTCAAGCAGTGGTGATAATGAGCTTGTTAAGAAGGGAATCTTGAATGGTGCTTGTTGCTATCTGGTGAAACCTGTTAACATTGAAGTGTTCAAGACTATTTGGCAACATGTTTTCCGGAGGAAAAATTTGAACTCCAAGGACCGATGCAAGTCTTTTGATCAAGACAAGCTCTGCAATGGAGCAGGAGAATGTGAAGAAGGGACTTCAGCATCAAGTAGTTCAGAAAACATTGGAGAACACAGAATAAAAAGAAAATACCAAAATGAAGATGATGAAGGCGGCGAAGATGAAGATGAGAATGAGGAACGATCAACCCCGAAGAAGCGTCGGATAGTTTGGACAGAAGCGATGAAAAAACAGTTTGATGACGTTTATAAATATCTGGGACCAGAAAAGGCTGTACCTATGAATATTCAAAAGCTGATGAATGTTGAAGGTCTCACAAGAAGTCATGTGGCTAGCCATCTACAGAAATATAGGGAACAACTAAGAAAAGGCAGCAGTAATCAGGTAAAGCAGAGAGCTAGAATGGTTGTTGATTTGGGGAGAAAAGATTCTTCTTCTTACATGCCACACATGAGTCCAGTTGATGAATCTGGAGTGAGACAACTCTCGAATGCTGTTCCTTTATCCTCATACATACCTCCTCGGATGCTTTCTAGATCAAACTTCCCCACTGGTATTATAGTGAATCCTTCTTCTCATCTGCTGAGACCTGGTCAGTCCCAGAATTTGTGCAGCTCACTCAACACTTCGACATTACAAGGCAACCCACAGCAAAAACTTGGGCCACTAGTGACTGATTTCTATTCGTCTCATGGAATGAATTCATTGCATCCCAAATTGCTTGACAATGCCCTTTGTAGATCCTCCAATTTTGTGGATAACAATGGATGTTGTGAAAGTTGGCAGGGTGGTATGCAGGGTTGTGAACAGTTATACCAAACTGCTTTGCTCAGGAGTGAGGATTCCAATTTTGGTACATTGCCTGTTAACAACTTCGGTGTTTCTTCAAGTACACCTCTGATCGAGAACACTCCAAATGACTTCTATTCTGTAGGTGTTAGAGAAAACGTACATATAGAAAACCAAGGCCCTGTTGCACCAACCACATATTGCACATCAGATATATGGTGGGAAGATCATACGCAAGATTACAACCATGACAGGAACATTCCTTACCTCGTTTCTAATGATGTTGTAGATCCACTATGCCTGACCTTGGATCAAAATGATGCAGTTTGCCATAGAAGCATGGAGTCATCTTCGTTTGACCAGTTCAATGGGGATAATGCTACTATTGTACAGTGCGCTGAGGTTGAGAATTCGACCATGCAGACAAAGATTGAACCTAATGAGCAAGAAAAGTCGAATGATGGCTTGGTTCAAAATAGTCTTGAGTTACTGGATAACCAGGTTGAGTTTGGTTTTCTGGATGGAGAGTTTGTATTTGATGCTATACAGAAACAGAAGGAGAACGAAGATTACAATTTTCTGGATGGAGGGTTGGAATTTCGTCCTTAG

Protein Analysis

611

Amino Acids

68.76

Weight (kDa)

4.91

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 27 - 133 7.2e-23 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AccIII TCCGGA 2 cut(s) 64, 423
AciI CCGC 1 cut(s) 588
AclWI GGATC 5 cut(s) 45, 63, 1170, 1508, 1542
AcsI RAATTY 6 cut(s) 186, 433, 1039, 1135, 1633, 1820
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 5 cut(s) 711, 1291, 1327, 1386, 1614
AfiI CCNNNNNNNGG 1 cut(s) 1531
AflIII ACRYGT 1 cut(s) 415
AhlI ACTAGT 1 cut(s) 1102
AjnI CCWGG 4 cut(s) 81, 216, 1024, 1722
AjuI GAANNNNNNNTTGG 2 cut(s) 1673, 1705
AluBI AGCT 6 cut(s) 262, 331, 478, 730, 833, 1050
AluI AGCT 6 cut(s) 262, 331, 478, 730, 833, 1050
Alw26I GTCTC 5 cut(s) 6, 752, 907, 1015, 1128
AlwI GGATC 5 cut(s) 45, 63, 1170, 1508, 1542
Aor13HI TCCGGA 2 cut(s) 64, 423
AoxI GGCC 2 cut(s) 1097, 1402
ApeKI GCWGC 2 cut(s) 807, 1047
ApoI RAATTY 6 cut(s) 186, 433, 1039, 1135, 1633, 1820
Asp700I GAANNNNTTC 2 cut(s) 862, 1135
AspLEI GCGC 2 cut(s) 280, 1622
AspS9I GGNCC 5 cut(s) 289, 448, 695, 1097, 1403
AsuHPI GGTGA 2 cut(s) 332, 385
AsuNHI GCTAGC 1 cut(s) 767
AvaII GGWCC 3 cut(s) 289, 448, 695
BbvCI CCTCAGC 1 cut(s) 1623
BbvI GCAGC 2 cut(s) 819, 1059
BccI CCATC 6 cut(s) 46, 62, 780, 1679, 1739, 1802
BciT130I CCWGG 4 cut(s) 83, 218, 1026, 1724
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 5 cut(s) 6, 752, 907, 1015, 1128
BcuI ACTAGT 1 cut(s) 1102
BfaI CTAG 6 cut(s) 9, 20, 768, 834, 969, 1103
BfmI CTRYAG 3 cut(s) 297, 776, 1365
BisI GCNGC 3 cut(s) 589, 808, 1048
BlsI GCNGC 3 cut(s) 590, 809, 1049
Bme1390I CCNGG 4 cut(s) 83, 218, 1026, 1724
Bme18I GGWCC 3 cut(s) 289, 448, 695
BmgT120I GGNCC 5 cut(s) 289, 448, 695, 1097, 1403
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 4 cut(s) 83, 218, 1026, 1724
BmsI GCATC 7 cut(s) 228, 443, 527, 951, 1153, 1534, 1753
BmtI GCTAGC 1 cut(s) 771
BpmI CTGGAG 2 cut(s) 251, 927
Bpu10I CCTNAGC 2 cut(s) 1265, 1623
BpuEI CTTGAG 1 cut(s) 1727
BsaAI YACGTR 1 cut(s) 134
BsaI GGTCTC 3 cut(s) 6, 752, 1015
BsaJI CCNNGG 4 cut(s) 444, 956, 1399, 1530
BsaWI WCCGGW 2 cut(s) 64, 423
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 1740, 1770
Bsc4I CCNNNNNNNGG 1 cut(s) 1531
Bse1I ACTGG 4 cut(s) 893, 991, 1585, 1719
Bse3DI GCAATG 3 cut(s) 490, 1139, 1292
BseAI TCCGGA 2 cut(s) 64, 423
BseBI CCWGG 4 cut(s) 83, 218, 1026, 1724
BseDI CCNNGG 4 cut(s) 444, 956, 1399, 1530
BseGI GGATG 8 cut(s) 10, 73, 243, 966, 1144, 1208, 1750, 1813
BseLI CCNNNNNNNGG 1 cut(s) 1531
BseMI GCAATG 3 cut(s) 490, 1139, 1292
BseMII CTCAG 3 cut(s) 1010, 1279, 1614
BseNI ACTGG 4 cut(s) 893, 991, 1585, 1719
BseRI GAGGAG 2 cut(s) 254, 945
BseXI GCAGC 2 cut(s) 819, 1059
BsgI GTGCAG 1 cut(s) 1066
BshFI GGCC 2 cut(s) 1099, 1404
BsiSI CCGG 3 cut(s) 65, 242, 424
BslFI GGGAC 3 cut(s) 523, 708, 1018
BslI CCNNNNNNNGG 1 cut(s) 1531
BsmAI GTCTC 5 cut(s) 6, 752, 907, 1015, 1128
BsmBI CGTCTC 1 cut(s) 1128
BsmFI GGGAC 3 cut(s) 523, 708, 1018
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 2 cut(s) 1099, 1404
Bso31I GGTCTC 3 cut(s) 6, 752, 1015
Bsp13I TCCGGA 2 cut(s) 64, 423
Bsp1407I TGTACA 1 cut(s) 1612
BspACI CCGC 1 cut(s) 588
BspANI GGCC 2 cut(s) 1099, 1404
BspCNI CTCAG 3 cut(s) 1011, 1278, 1615
BspEI TCCGGA 2 cut(s) 64, 423
BspLI GGNNCC 1 cut(s) 696
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 5 cut(s) 45, 63, 1170, 1508, 1542
BspTNI GGTCTC 3 cut(s) 6, 752, 1015
BsrDI GCAATG 3 cut(s) 490, 1139, 1292
BsrGI TGTACA 1 cut(s) 1612
BsrI ACTGG 4 cut(s) 893, 991, 1585, 1719
BssECI CCNNGG 4 cut(s) 444, 956, 1399, 1530
BssT1I CCWWGG 3 cut(s) 444, 1399, 1530
Bst2UI CCWGG 4 cut(s) 83, 218, 1026, 1724
Bst4CI ACNGT 4 cut(s) 160, 669, 1245, 1617
BstAUI TGTACA 1 cut(s) 1612
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 177, 769
BstDEI CTNAG 6 cut(s) 191, 797, 1019, 1265, 1623, 1830
BstF5I GGATG 8 cut(s) 10, 73, 243, 966, 1144, 1208, 1750, 1813
BstHHI GCGC 2 cut(s) 280, 1622
BstMAI GTCTC 5 cut(s) 6, 752, 907, 1015, 1128
BstMWI GCNNNNNNNGC 4 cut(s) 176, 268, 277, 1560
BstNI CCWGG 4 cut(s) 83, 218, 1026, 1724
BstNSI RCATGY 2 cut(s) 419, 880
BstSCI CCNGG 4 cut(s) 81, 216, 1024, 1722
BstSFI CTRYAG 3 cut(s) 297, 776, 1365
BstSNI TACGTA 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 819, 1059
BstX2I RGATCY 2 cut(s) 1175, 1513
BstXI CCANNNNNNTGG 2 cut(s) 1189, 1592
BstYI RGATCY 2 cut(s) 1175, 1513
BsuRI GGCC 2 cut(s) 1099, 1404
BtgZI GCGATG 1 cut(s) 671
BtsCI GGATG 8 cut(s) 10, 73, 243, 966, 1144, 1208, 1750, 1813
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 4 cut(s) 232, 322, 984, 1622
Cac8I GCNNGC 2 cut(s) 177, 769
CfoI GCGC 2 cut(s) 280, 1622
Cfr13I GGNCC 5 cut(s) 289, 448, 695, 1097, 1403
CseI GACGC 1 cut(s) 623
CsiI ACCWGGT 3 cut(s) 216, 1024, 1722
Csp6I GTAC 5 cut(s) 710, 1290, 1326, 1385, 1613
CviAII CATG 9 cut(s) 304, 416, 761, 877, 886, 1127, 1472, 1564, 1642
CviQI GTAC 5 cut(s) 710, 1290, 1326, 1385, 1613
DdeI CTNAG 6 cut(s) 191, 797, 1019, 1265, 1623, 1830
Eco105I TACGTA 1 cut(s) 134
Eco130I CCWWGG 3 cut(s) 444, 1399, 1530
Eco31I GGTCTC 3 cut(s) 6, 752, 1015
Eco47I GGWCC 3 cut(s) 289, 448, 695
Eco57I CTGAAG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 1403
EcoRI GAATTC 2 cut(s) 1135, 1633
EcoRII CCWGG 4 cut(s) 81, 216, 1024, 1722
EcoT14I CCWWGG 3 cut(s) 444, 1399, 1530
ErhI CCWWGG 3 cut(s) 444, 1399, 1530
Esp3I CGTCTC 1 cut(s) 1128
FaeI CATG 9 cut(s) 307, 419, 764, 880, 889, 1130, 1475, 1567, 1645
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 3 cut(s) 523, 708, 1018
FatI CATG 9 cut(s) 303, 415, 760, 876, 885, 1126, 1471, 1563, 1641
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 589, 808, 1048
FokI GGATG 8 cut(s) 17, 80, 250, 973, 1131, 1215, 1757, 1820
Fsp4HI GCNGC 3 cut(s) 589, 808, 1048
FspBI CTAG 6 cut(s) 9, 20, 768, 834, 969, 1103
GlaI GCGC 2 cut(s) 279, 1621
GluI GCNGC 3 cut(s) 589, 808, 1048
GsuI CTGGAG 2 cut(s) 251, 927
HaeIII GGCC 2 cut(s) 1099, 1404
HapII CCGG 3 cut(s) 65, 242, 424
HgaI GACGC 1 cut(s) 623
HhaI GCGC 2 cut(s) 280, 1622
Hin1II CATG 9 cut(s) 307, 419, 764, 880, 889, 1130, 1475, 1567, 1645
Hin6I GCGC 2 cut(s) 278, 1620
HinP1I GCGC 2 cut(s) 278, 1620
HincII GTYRAC 2 cut(s) 385, 1303
HindII GTYRAC 2 cut(s) 385, 1303
HinfI GANTC 7 cut(s) 345, 863, 889, 902, 1000, 1277, 1568
HpaI GTTAAC 2 cut(s) 385, 1303
HpaII CCGG 3 cut(s) 65, 242, 424
HphI GGTGA 2 cut(s) 332, 385
Hpy166II GTNNAC 4 cut(s) 385, 1241, 1303, 1328
Hpy188I TCNGA 6 cut(s) 42, 532, 639, 960, 1335, 1435
Hpy8I GTNNAC 4 cut(s) 385, 1241, 1303, 1328
Hpy99I CGWCG 2 cut(s) 101, 639
HpyAV CCTTC 6 cut(s) 334, 500, 578, 737, 1014, 1774
HpyCH4III ACNGT 4 cut(s) 160, 669, 1245, 1617
HpyCH4IV ACGT 4 cut(s) 99, 133, 678, 1383
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 268, 277, 1560
HpyF3I CTNAG 6 cut(s) 191, 797, 1019, 1265, 1623, 1830
HpySE526I ACGT 4 cut(s) 99, 133, 678, 1383
Hsp92II CATG 9 cut(s) 307, 419, 764, 880, 889, 1130, 1475, 1567, 1645
HspAI GCGC 2 cut(s) 278, 1620
Kpn2I TCCGGA 2 cut(s) 64, 423
Ksp22I TGATCA 1 cut(s) 466
KspAI GTTAAC 2 cut(s) 385, 1303
LmnI GCTCC 2 cut(s) 267, 488
Lsp1109I GCAGC 2 cut(s) 819, 1059
LweI GCATC 7 cut(s) 228, 443, 527, 951, 1153, 1534, 1753
MabI ACCWGGT 3 cut(s) 216, 1024, 1722
MaeI CTAG 6 cut(s) 9, 20, 768, 834, 969, 1103
MaeII ACGT 4 cut(s) 99, 133, 678, 1383
MaeIII GTNAC 4 cut(s) 100, 151, 1105, 1710
MflI RGATCY 2 cut(s) 1175, 1513
MlyI GAGTC 2 cut(s) 898, 1577
MmeI TCCRAC 2 cut(s) 617, 1797
MroI TCCGGA 2 cut(s) 64, 423
MroXI GAANNNNTTC 2 cut(s) 862, 1135
MseI TTAA 3 cut(s) 336, 384, 1302
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 3 cut(s) 65, 242, 424
MspR9I CCNGG 4 cut(s) 83, 218, 1026, 1724
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 4 cut(s) 83, 218, 1026, 1724
MwoI GCNNNNNNNGC 4 cut(s) 176, 268, 277, 1560
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 9 cut(s) 307, 419, 764, 880, 889, 1130, 1475, 1567, 1645
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 1 cut(s) 1105
NspI RCATGY 2 cut(s) 419, 880
PciI ACATGT 1 cut(s) 415
PctI GAATGC 1 cut(s) 931
PdmI GAANNNNTTC 2 cut(s) 862, 1135
PfeI GAWTC 5 cut(s) 345, 863, 902, 1000, 1277
PflFI GACNNNGTC 1 cut(s) 1026
PkrI GCNGC 3 cut(s) 590, 809, 1049
PleI GAGTC 2 cut(s) 897, 1576
PpsI GAGTC 2 cut(s) 897, 1576
Ppu21I YACGTR 1 cut(s) 134
PscI ACATGT 1 cut(s) 415
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 4 cut(s) 81, 216, 1024, 1722
PspGI CCWGG 4 cut(s) 81, 216, 1024, 1722
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 5 cut(s) 289, 448, 695, 1097, 1403
PsrI GAACNNNNNNTAC 4 cut(s) 1472, 1504, 1778, 1810
PsuI RGATCY 2 cut(s) 1175, 1513
PsyI GACNNNGTC 1 cut(s) 1026
RsaI GTAC 5 cut(s) 711, 1291, 1327, 1386, 1614
RsaNI GTAC 5 cut(s) 710, 1290, 1326, 1385, 1613
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 3 cut(s) 336, 384, 1302
SatI GCNGC 3 cut(s) 589, 808, 1048
Sau96I GGNCC 5 cut(s) 289, 448, 695, 1097, 1403
SchI GAGTC 2 cut(s) 898, 1577
ScrFI CCNGG 4 cut(s) 83, 218, 1026, 1724
SexAI ACCWGGT 3 cut(s) 216, 1024, 1722
SfaNI GCATC 7 cut(s) 228, 443, 527, 951, 1153, 1534, 1753
SfcI CTRYAG 3 cut(s) 297, 776, 1365
SinI GGWCC 3 cut(s) 289, 448, 695
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 1706
SmoI CTYRAG 1 cut(s) 1706
SnaBI TACGTA 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 1102
SsiI CCGC 1 cut(s) 588
SspI AATATT 1 cut(s) 721
SspMI CTAG 6 cut(s) 9, 20, 768, 834, 969, 1103
StyD4I CCNGG 4 cut(s) 81, 216, 1024, 1722
StyI CCWWGG 3 cut(s) 444, 1399, 1530
TaaI ACNGT 4 cut(s) 160, 669, 1245, 1617
TaiI ACGT 4 cut(s) 102, 136, 681, 1386
TaqI TCGA 6 cut(s) 183, 923, 1064, 1338, 1637, 1679
TaqII GACCGA 1 cut(s) 465
TatI WGTACW 2 cut(s) 1325, 1612
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 5 cut(s) 345, 863, 902, 1000, 1277
Tru1I TTAA 3 cut(s) 336, 384, 1302
Tru9I TTAA 3 cut(s) 336, 384, 1302
TscAI CASTG 4 cut(s) 232, 322, 991, 1622
TseFI GTSAC 1 cut(s) 1105
TseI GCWGC 2 cut(s) 807, 1047
Tsp45I GTSAC 1 cut(s) 1105
TspRI CASTG 4 cut(s) 232, 322, 991, 1622
Tth111I GACNNNGTC 1 cut(s) 1026
VpaK11BI GGWCC 3 cut(s) 289, 448, 695
XapI RAATTY 6 cut(s) 186, 433, 1039, 1135, 1633, 1820
XbaI TCTAGA 1 cut(s) 968
XceI RCATGY 2 cut(s) 419, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 1730
XmnI GAANNNNTTC 2 cut(s) 862, 1135
XspI CTAG 6 cut(s) 9, 20, 768, 834, 969, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.