Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376609.1

Orthogroup ID

OG0004285

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1148

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 863 bp

tgaagagctcaagaatatctggcaacatgtagtccggaaaaagttcgactccaaggaccaaaaaaagtcttccaatcaggacaagagcaatggcattggagaaggtgtacaaggggcttcaccaacaggtagttcagatcagaatgggaaactgagcaagaaaagaaaggaccaaaatggagacgaggaagaagaaagtgaagatgatgaacatgagactgaggactcatcgagtcagaagaagcctcgggtagtttggtatggggagttacacagaaagtttgtggcagctgtaaatcagttgggagttgaaagggctgttccgaagaaaattcttgacctgatggatgttgaaggattatcaagggaaaatgtggcgagccatctacagaaatatcggcaataccttaaaagaataagcagtggcatggttggttctttgggaggaaaagagtcctcttatgtgcgcatgggtgtgttagatggatctagagatctacaatccttgagatcagggagaatctctagtactactttatcaacatacacatctggtgggatgcttagtagattaaactcgccggctggtttgagcacaggaggaattacttcttccggtctgggacaacctggtcactcccaaaacgtgagcaactatattaatccttttgcaaagctccagccaactgtgcctccaaaccaaagttcaaattcattccaagcgactccagcattattacagctcaatcagttgcagcagagcaagtgcatcacccacaatgggaagtcctatcccgacaatgattcaacaaactatacaatatcatctacgtttcggaattcaggagtgtcttctagtccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

287

Amino Acids

31.28

Weight (kDa)

9.11

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58080
fragaria_vesca	FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_6g29050
malus_domestica	MD15G1155800.v1.1
prunus_persica	Prupe.7G259300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086131 RchiOBHm_Chr2g0133831
rosa_laevigata	RLG00000015746 RLG00000019368
rosa_multiflora	Rmu_co8376609.1_g000001 Rmu_sc0001782.1_g000042 Rmu_sc0004510.1_g000003
rosa_roxburghii	Rroxscaffold_2G00110780 Rroxscaffold_2G00154780
rosa_rugosa	Rorug01G0465900 Rorug01G0465900 Rorug02G0313900
rosa_samantha	Rh2AG015600 Rh2AG367400 Rh2BG015700 Rh2BG372800 Rh2CG016600 Rh2CG350700 Rh2DG017700 Rh2DG389900
rosa_wichuraiana	Rw2G001360 Rw2G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
Acc16I	TGCGCA	1 cut(s)	468
AccIII	TCCGGA	1 cut(s)	34
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	3 cut(s)	331, 710, 839
AfaI	GTAC	2 cut(s)	109, 530
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	312, 354, 709, 808
AjnI	CCWGG	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 689, 721
AluBI	AGCT	4 cut(s)	8, 291, 677, 743
AluI	AGCT	4 cut(s)	8, 291, 677, 743
Alw21I	GWGCWC	2 cut(s)	10, 597
Alw26I	GTCTC	2 cut(s)	175, 210
AlwI	GGATC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	247
Aor13HI	TCCGGA	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	288, 755
ApoI	RAATTY	3 cut(s)	331, 710, 839
AseI	ATTAAT	1 cut(s)	661
Asp700I	GAANNNNTTC	2 cut(s)	42, 608
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	56, 170
AsuHPI	GGTGA	2 cut(s)	112, 764
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	2 cut(s)	56, 170
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	2 cut(s)	61, 844
Bbv12I	GWGCWC	2 cut(s)	10, 597
BbvI	GCAGC	2 cut(s)	300, 767
BccI	CCATC	3 cut(s)	338, 391, 477
BciT130I	CCWGG	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	175, 210
BfaI	CTAG	3 cut(s)	490, 526, 856
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	2 cut(s)	289, 756
BlsI	GCNGC	2 cut(s)	290, 757
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	2 cut(s)	56, 170
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	56, 170
BmrFI	CCNGG	1 cut(s)	631
BmsI	GCATC	2 cut(s)	550, 778
BpiI	GAAGAC	2 cut(s)	61, 844
BpmI	CTGGAG	2 cut(s)	663, 712
BpuEI	CTTGAG	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	52, 246
BsaWI	WCCGGW	2 cut(s)	34, 615
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse118I	RCCGGY	1 cut(s)	581
Bse3DI	GCAATG	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	2 cut(s)	52, 246
BseGI	GGATG	2 cut(s)	353, 565
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	144, 211
BseXI	GCAGC	2 cut(s)	300, 767
BsiHKAI	GWGCWC	2 cut(s)	10, 597
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	35, 582, 616
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	2 cut(s)	175, 210
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	637
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	10, 597
Bsp13I	TCCGGA	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	137, 486, 494, 510
BspCNI	CTCAG	2 cut(s)	145, 212
BspEI	TCCGGA	1 cut(s)	34
BspPI	GGATC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	52, 246
BssMI	GATC	4 cut(s)	137, 486, 494, 510
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	1 cut(s)	689
BstAUI	TGTACA	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	380, 583
BstDEI	CTNAG	3 cut(s)	153, 220, 564
BstF5I	GGATG	2 cut(s)	353, 565
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	140, 489, 497, 513
BstMAI	GTCTC	2 cut(s)	175, 210
BstMBI	GATC	4 cut(s)	137, 486, 494, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 729
BstNI	CCWGG	1 cut(s)	631
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	300, 767
BstV2I	GAAGAC	2 cut(s)	61, 844
BstX2I	RGATCY	2 cut(s)	486, 494
BstYI	RGATCY	2 cut(s)	486, 494
BtsCI	GGATG	2 cut(s)	353, 565
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	380, 583
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	56, 170
CsiI	ACCWGGT	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	108, 529
CviAII	CATG	4 cut(s)	27, 213, 428, 470
CviQI	GTAC	2 cut(s)	108, 529
DdeI	CTNAG	3 cut(s)	153, 220, 564
DpnI	GATC	4 cut(s)	139, 488, 496, 512
DpnII	GATC	4 cut(s)	137, 486, 494, 510
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	56, 170
Eco53kI	GAGCTC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	4 cut(s)	30, 216, 431, 473
FaiI	YATR	9 cut(s)	28, 214, 262, 429, 463, 471, 545, 658, 817
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	4 cut(s)	26, 212, 427, 469
Fnu4HI	GCNGC	2 cut(s)	289, 756
FokI	GGATG	2 cut(s)	360, 572
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	289, 756
FspAI	RTGCGCAY	1 cut(s)	468
FspBI	CTAG	3 cut(s)	490, 526, 856
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	289, 756
GsuI	CTGGAG	2 cut(s)	663, 712
HapII	CCGG	3 cut(s)	35, 582, 616
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	30, 216, 431, 473
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HinfI	GANTC	7 cut(s)	48, 225, 233, 453, 520, 725, 804
HpaII	CCGG	3 cut(s)	35, 582, 616
HphI	GGTGA	2 cut(s)	112, 764
Hpy166II	GTNNAC	2 cut(s)	108, 861
Hpy188I	TCNGA	5 cut(s)	137, 142, 238, 325, 838
Hpy188III	TCNNGA	7 cut(s)	11, 35, 78, 336, 490, 795, 844
Hpy8I	GTNNAC	2 cut(s)	108, 861
HpyAV	CCTTC	2 cut(s)	96, 348
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	2 cut(s)	646, 831
HpyCH4V	TGCA	3 cut(s)	672, 755, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 729
HpyF3I	CTNAG	3 cut(s)	153, 220, 564
HpySE526I	ACGT	2 cut(s)	646, 831
Hsp92II	CATG	4 cut(s)	30, 216, 431, 473
HspAI	GCGC	1 cut(s)	467
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	581
KroNI	GCCGGC	1 cut(s)	583
Kzo9I	GATC	4 cut(s)	137, 486, 494, 510
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	2 cut(s)	300, 767
LweI	GCATC	2 cut(s)	550, 778
MabI	ACCWGGT	1 cut(s)	629
MaeI	CTAG	3 cut(s)	490, 526, 856
MaeII	ACGT	2 cut(s)	646, 831
MaeIII	GTNAC	2 cut(s)	268, 633
MalI	GATC	4 cut(s)	139, 488, 496, 512
MboI	GATC	4 cut(s)	137, 486, 494, 510
MboII	GAAGA	9 cut(s)	15, 61, 201, 204, 213, 251, 338, 604, 844
MflI	RGATCY	2 cut(s)	486, 494
MhlI	GDGCHC	2 cut(s)	10, 597
MluCI	AATT	4 cut(s)	331, 604, 710, 839
MlyI	GAGTC	5 cut(s)	42, 219, 242, 462, 719
MnlI	CCTC	7 cut(s)	179, 215, 256, 438, 467, 594, 703
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	581
MroXI	GAANNNNTTC	2 cut(s)	42, 608
MseI	TTAA	3 cut(s)	409, 573, 661
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	3 cut(s)	35, 582, 616
MspR9I	CCNGG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	689, 729
NaeI	GCCGGC	1 cut(s)	583
NdeII	GATC	4 cut(s)	137, 486, 494, 510
NgoMIV	GCCGGC	1 cut(s)	581
NlaIII	CATG	4 cut(s)	30, 216, 431, 473
NmuCI	GTSAC	1 cut(s)	633
NsbI	TGCGCA	1 cut(s)	468
NspI	RCATGY	1 cut(s)	30
PciI	ACATGT	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	583
PdmI	GAANNNNTTC	2 cut(s)	42, 608
PfeI	GAWTC	2 cut(s)	520, 804
PkrI	GCNGC	2 cut(s)	290, 757
PleI	GAGTC	5 cut(s)	42, 219, 241, 461, 719
PpsI	GAGTC	5 cut(s)	42, 219, 241, 461, 719
PscI	ACATGT	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	56, 170
PsuI	RGATCY	2 cut(s)	486, 494
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	109, 530
RsaNI	GTAC	2 cut(s)	108, 529
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	409, 573, 661
SatI	GCNGC	2 cut(s)	289, 756
Sau3AI	GATC	4 cut(s)	137, 486, 494, 510
Sau96I	GGNCC	2 cut(s)	56, 170
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	5 cut(s)	42, 219, 242, 462, 719
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	10, 597
SexAI	ACCWGGT	1 cut(s)	629
SfaNI	GCATC	2 cut(s)	550, 778
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	56, 170
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	9, 506
SmoI	CTYRAG	2 cut(s)	9, 506
Sse9I	AATT	4 cut(s)	331, 604, 710, 839
SspMI	CTAG	3 cut(s)	490, 526, 856
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	2 cut(s)	649, 834
TaqI	TCGA	2 cut(s)	46, 231
TasI	AATT	4 cut(s)	331, 604, 710, 839
TatI	WGTACW	2 cut(s)	107, 528
TfiI	GAWTC	2 cut(s)	520, 804
Tru1I	TTAA	3 cut(s)	409, 573, 661
Tru9I	TTAA	3 cut(s)	409, 573, 661
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	2 cut(s)	288, 755
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	2 cut(s)	223, 703
TspRI	CASTG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	56, 170
VspI	ATTAAT	1 cut(s)	661
XapI	RAATTY	3 cut(s)	331, 710, 839
XbaI	TCTAGA	1 cut(s)	489
XceI	RCATGY	1 cut(s)	30
XmnI	GAANNNNTTC	2 cut(s)	42, 608
XspI	CTAG	3 cut(s)	490, 526, 856
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.