Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004285

Physical Location & Seq

Genomic Coordinates Reverse (-)

1278980 .. 1282666

Gene Structure 3687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGACTGTGGAGGACCAAAGAGACCGGTTTCCGGAGGGTATGAGAGTCCTAGCCGTCGACGACGACCCAACTTGTCTCAAATTCTTGGAGGGTTTGCTTCGCAAATGCAAGTATCATGTTACTACTACCAATCAGGCAATCAAGGCATTGGAAATGTTGAGGGAAAACAGAGATAAGTATGACCTAGTAATTAGTGATGTTAATATGCCTGACATGGATGGCTTTCAGCTCCTTGAACTCGTGGGACTTGAGATGGACTTACCTGTGATCATGTTGTCAGGATATAGTGATTTCAAACTTGTAATGAAGGGAATCTCCCATGGTGCTTGTAATTATTTGTTGAAACCTGTTAGAATTGAAGAGCTCAAGAATATCTGGCAACATGTAGTCCGGAAAAAATTCGACTCCAAGGACCAAAAAAAGTCTTCCAATCAGGACAAGTGCAATGGAATTGGAGAAGGTGTACAAGGGGCTTCGCCAACAGGTAGTTCAGATCAGAATGGGAAACTGAGCAAGAAAAGAAAGGACCAAAATGGAGACGAGGAAGAAGAAAGTGAAGATGATGAACATGAGACTGAGGACTCATCGAGTCAGAAGAAGCCTCGGGTAGTTTGGTATGGGGAGTTACACAGAAAGTTTGTGGCAGCTGTAAATCAGTTGGGAGTTGAAAGGGCTGTTCCGAAGAAAATTCTTGACCTGATGGATGTTGAAGGATTATCAAGGGAAAATGTGGCGAGCCATCTACAGAAATATCGGCAATACCTTAAAAGAATAAGCAGTGGCATGGTTGGTTCTTTGGGAGGAAAAGAGTCCTCTTATGTGCGCATGGGTGTGTTAGATGGATCTAGAGATCTACAATCCTTGAGATCAGGGAGAATCTCTAGTACTACTTTATCAACATACACATCTGGTGGGATGCTTAGTAGATTAAACTCGCCGGCTGGTTTGAGCACAGGAGGAATTACTTCTTCCGGTCTGGGACAACCTGGTCACTCCCAAAACTTGAGCAACTATATTAATCCTTTTGCAAAGCTCCAGCCAACTGTGCTTCCAAACCAAAGTTCAAATTTATTCCAAGCGACTCCAGCATTATTACAGCTCAATCAGTTGCAGCAGAGCAAGTGCATCACCCACAATGGGAAGTCCTATCCCGACAATGATTCAACAAACTATACAATATCATCTACGTTTCGGAATTCAGGAGTGTCTTCTAGTCCACTCCCTTCTGATTCCAATTTTTCGAGCAATCATTTGATGTTACATGGCATACCACAACAAACACATAGTACGGAAGTGTTTGGAAATCCGACTTCTGTTAAAGTATCATTTGACATCGGCATCTCTGGCTCCCCTAATTTTCTGGATTACAATCGGTGTAGTGAAAACTTTCAGGGTGGTGCACGGTTATCCAGCTTTCCATCAAATGCTTTGCCAATGAGTGAGCCTTTTAATCATGGTCAAATGCATGCTAATAACTTGGGTGTTTTTTCTGGTAGGCCTCAAATTGGGAACACCCTGAATGATTTTTCTTCTGTAAGTGCACTTTCAGCTCCTGTTGATGAATTAAGAGGAAATGCACAGAACCAAGAAGGCTTGATTGGTGATGTTGTACCGACATTGAGTTACATGCCAAAGCAAAGGTGGGAAGAACACAAGGAAGGTTACAACCACGAGTTGAATCAAACTTTCAGTGCCATAAATTCCCCGGGTTCTACATTAGGTGTTAATGGCCGTGTAAGCCAGAGTTTGGATCAAAATGTTGCAGTATGCAGTTATGAAAGGAATTCATCTTTATTTGACCGGTTAAATGGGGCCACTGCAATGTTTGAGCAACCAAGTGCGGCTGGTAAGTCTTCCATGGAGACAAAGATGAAGGCGAATGAGGACTACTTCTTGGAGCAAATAAAGTCACCTAGTGGCTTCGTTCAGAATAGTTATGAATCATTGAATGATATAATGAGCACAATAATGAAACGGGAACAAAATGAGAATCTCTTACTGGATGCAGAATTTGGATTCGATGCGTACTCCCTTGGCTCATGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

682

Amino Acids

75.18

Weight (kDa)

5.76

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	16 - 124	3.4e-23	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58080
fragaria_vesca	FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_6g29050
malus_domestica	MD15G1155800.v1.1
prunus_persica	Prupe.7G259300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086131 RchiOBHm_Chr2g0133831
rosa_laevigata	RLG00000015746 RLG00000019368
rosa_multiflora	Rmu_co8376609.1_g000001 Rmu_sc0001782.1_g000042 Rmu_sc0004510.1_g000003
rosa_roxburghii	Rroxscaffold_2G00110780 Rroxscaffold_2G00154780
rosa_rugosa	Rorug01G0465900 Rorug01G0465900 Rorug02G0313900
rosa_samantha	Rh2AG015600 Rh2AG367400 Rh2BG015700 Rh2BG372800 Rh2CG016600 Rh2CG350700 Rh2DG017700 Rh2DG389900
rosa_wichuraiana	Rw2G001360 Rw2G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	987
Acc16I	TGCGCA	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	1747
AccI	GTMKAC	1 cut(s)	57
AccIII	TCCGGA	2 cut(s)	31, 390
AciI	CCGC	1 cut(s)	1841
AclWI	GGATC	2 cut(s)	850, 1758
AcoI	YGGCCR	1 cut(s)	1729
AcsI	RAATTY	8 cut(s)	80, 398, 687, 1066, 1195, 1699, 1783, 2009
AdeI	CACNNNGTG	1 cut(s)	1916
AfaI	GTAC	5 cut(s)	465, 886, 1288, 1611, 2027
AfiI	CCNNNNNNNGG	4 cut(s)	31, 1137, 1505, 1747
AflIII	ACRYGT	1 cut(s)	382
AgeI	ACCGGT	2 cut(s)	24, 1800
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	6 cut(s)	472, 504, 1045, 1077, 1581, 1613
AluBI	AGCT	7 cut(s)	229, 364, 647, 1033, 1099, 1413, 1550
AluI	AGCT	7 cut(s)	229, 364, 647, 1033, 1099, 1413, 1550
Alw21I	GWGCWC	5 cut(s)	366, 953, 1402, 1543, 1964
Alw26I	GTCTC	5 cut(s)	15, 80, 531, 566, 1856
Alw44I	GTGCAC	2 cut(s)	1398, 1539
AlwI	GGATC	2 cut(s)	850, 1758
AlwNI	CAGNNNCTG	1 cut(s)	1553
Ama87I	CYCGRG	2 cut(s)	603, 1705
Aor13HI	TCCGGA	2 cut(s)	31, 390
AoxI	GGCC	3 cut(s)	1496, 1729, 1812
ApaLI	GTGCAC	2 cut(s)	1398, 1539
ApeKI	GCWGC	2 cut(s)	644, 1111
ApoI	RAATTY	8 cut(s)	80, 398, 687, 1066, 1195, 1699, 1783, 2009
AseI	ATTAAT	1 cut(s)	1017
AsiGI	ACCGGT	2 cut(s)	24, 1800
Asp700I	GAANNNNTTC	3 cut(s)	398, 964, 1386
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	4 cut(s)	13, 412, 526, 1812
AsuC2I	CCSGG	2 cut(s)	1706, 1707
AsuHPI	GGTGA	3 cut(s)	1120, 1613, 1902
AvaI	CYCGRG	2 cut(s)	603, 1705
AvaII	GGWCC	3 cut(s)	13, 412, 526
BaeGI	GKGCMC	2 cut(s)	1402, 1543
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	2 cut(s)	239, 1670
BbsI	GAAGAC	3 cut(s)	417, 1200, 1845
Bbv12I	GWGCWC	5 cut(s)	366, 953, 1402, 1543, 1964
BbvI	GCAGC	2 cut(s)	656, 1123
BccI	CCATC	6 cut(s)	212, 247, 694, 747, 833, 1426
BceAI	ACGGC	2 cut(s)	38, 1716
BciT130I	CCWGG	1 cut(s)	987
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	2 cut(s)	1706, 1707
BcoDI	GTCTC	5 cut(s)	15, 80, 531, 566, 1856
BfaI	CTAG	6 cut(s)	50, 185, 846, 882, 1212, 1914
BfmI	CTRYAG	1 cut(s)	743
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	3 cut(s)	645, 1112, 1842
BlsI	GCNGC	3 cut(s)	646, 1113, 1843
BmcAI	AGTACT	1 cut(s)	886
Bme1390I	CCNGG	3 cut(s)	987, 1706, 1707
Bme18I	GGWCC	3 cut(s)	13, 412, 526
BmeT110I	CYCGRG	2 cut(s)	603, 1705
BmgT120I	GGNCC	4 cut(s)	13, 412, 526, 1812
BmiI	GGNNCC	2 cut(s)	1348, 1813
BmrFI	CCNGG	3 cut(s)	987, 1706, 1707
BmsI	GCATC	5 cut(s)	906, 1134, 1347, 1993, 2011
BpiI	GAAGAC	3 cut(s)	417, 1200, 1845
BpmI	CTGGAG	2 cut(s)	1019, 1068
BpuEI	CTTGAG	4 cut(s)	269, 350, 883, 1024
BpuMI	CCSGG	2 cut(s)	1706, 1707
BsaBI	GATNNNNATC	1 cut(s)	1368
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	7 cut(s)	319, 408, 602, 1704, 1705, 1857, 2032
BsaWI	WCCGGW	5 cut(s)	24, 31, 390, 971, 1800
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 1137, 1505, 1747
Bse118I	RCCGGY	3 cut(s)	24, 937, 1800
Bse1I	ACTGG	1 cut(s)	2004
Bse3DI	GCAATG	2 cut(s)	451, 1827
Bse8I	GATNNNNATC	1 cut(s)	1368
BseAI	TCCGGA	2 cut(s)	31, 390
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	7 cut(s)	319, 408, 602, 1704, 1705, 1857, 2032
BseGI	GGATG	4 cut(s)	223, 709, 921, 2008
BseJI	GATNNNNATC	1 cut(s)	1368
BseLI	CCNNNNNNNGG	4 cut(s)	31, 1137, 1505, 1747
BseMI	GCAATG	2 cut(s)	451, 1827
BseMII	CTCAG	2 cut(s)	500, 567
BseNI	ACTGG	1 cut(s)	2004
BseSI	GKGCMC	2 cut(s)	1402, 1543
BseXI	GCAGC	2 cut(s)	656, 1123
BshFI	GGCC	3 cut(s)	1498, 1731, 1814
BshTI	ACCGGT	2 cut(s)	24, 1800
BsiHKAI	GWGCWC	5 cut(s)	366, 953, 1402, 1543, 1964
BsiHKCI	CYCGRG	2 cut(s)	603, 1705
BsiSI	CCGG	7 cut(s)	25, 32, 391, 938, 972, 1706, 1801
BslFI	GGGAC	2 cut(s)	258, 993
BslI	CCNNNNNNNGG	4 cut(s)	31, 1137, 1505, 1747
BsmAI	GTCTC	5 cut(s)	15, 80, 531, 566, 1856
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	258, 993
BsnI	GGCC	3 cut(s)	1498, 1731, 1814
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	2 cut(s)	603, 1705
Bsp1286I	GDGCHC	5 cut(s)	366, 953, 1402, 1543, 1964
Bsp13I	TCCGGA	2 cut(s)	31, 390
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
Bsp19I	CCATGG	2 cut(s)	319, 1857
BspACI	CCGC	1 cut(s)	1841
BspANI	GGCC	3 cut(s)	1498, 1731, 1814
BspCNI	CTCAG	2 cut(s)	501, 568
BspEI	TCCGGA	2 cut(s)	31, 390
BspLI	GGNNCC	2 cut(s)	1348, 1813
BspPI	GGATC	2 cut(s)	850, 1758
BspQI	GCTCTTC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	2 cut(s)	451, 1827
BsrFI	RCCGGY	3 cut(s)	24, 937, 1800
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	2004
BssAI	RCCGGY	3 cut(s)	24, 937, 1800
BssECI	CCNNGG	7 cut(s)	319, 408, 602, 1704, 1705, 1857, 2032
BssMI	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
BssSI	CACGAG	2 cut(s)	239, 1670
BssT1I	CCWWGG	4 cut(s)	319, 408, 1857, 2032
Bst2BI	CACGAG	2 cut(s)	239, 1670
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	3 cut(s)	7, 1045, 1404
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	736, 939, 1467
BstDEI	CTNAG	3 cut(s)	509, 576, 920
BstDSI	CCRYGG	2 cut(s)	319, 1857
BstF5I	GGATG	4 cut(s)	223, 709, 921, 2008
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	6 cut(s)	270, 496, 845, 853, 869, 1753
BstMAI	GTCTC	5 cut(s)	15, 80, 531, 566, 1856
BstMBI	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 1045, 1085, 1344, 1547, 1737
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	3 cut(s)	386, 1469, 1630
BstSCI	CCNGG	3 cut(s)	985, 1704, 1705
BstSFI	CTRYAG	1 cut(s)	743
BstSLI	GKGCMC	2 cut(s)	1402, 1543
BstV1I	GCAGC	2 cut(s)	656, 1123
BstV2I	GAAGAC	3 cut(s)	417, 1200, 1845
BstX2I	RGATCY	2 cut(s)	842, 850
BstYI	RGATCY	2 cut(s)	842, 850
BsuRI	GGCC	3 cut(s)	1498, 1731, 1814
BtgI	CCRYGG	2 cut(s)	319, 1857
BtsCI	GGATG	4 cut(s)	223, 709, 921, 2008
BtsI	GCAGTG	2 cut(s)	784, 1815
BtsIMutI	CAGTG	3 cut(s)	784, 1696, 1815
Cac8I	GCNNGC	3 cut(s)	736, 939, 1467
CaiI	CAGNNNCTG	1 cut(s)	1553
CfoI	GCGC	1 cut(s)	825
Cfr10I	RCCGGY	3 cut(s)	24, 937, 1800
Cfr13I	GGNCC	4 cut(s)	13, 412, 526, 1812
Cfr9I	CCCGGG	1 cut(s)	1705
CsiI	ACCWGGT	1 cut(s)	985
Csp6I	GTAC	5 cut(s)	464, 885, 1287, 1610, 2026
CspAI	ACCGGT	2 cut(s)	24, 1800
CviQI	GTAC	5 cut(s)	464, 885, 1287, 1610, 2026
DdeI	CTNAG	3 cut(s)	509, 576, 920
DpnI	GATC	6 cut(s)	269, 495, 844, 852, 868, 1752
DpnII	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
DraIII	CACNNNGTG	1 cut(s)	1916
DrdI	GACNNNNNNGTC	1 cut(s)	987
DseDI	GACNNNNNNGTC	1 cut(s)	987
EaeI	YGGCCR	1 cut(s)	1729
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	4 cut(s)	319, 408, 1857, 2032
Eco147I	AGGCCT	1 cut(s)	1498
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	3 cut(s)	13, 412, 526
Eco53kI	GAGCTC	1 cut(s)	364
Eco88I	CYCGRG	2 cut(s)	603, 1705
EcoICRI	GAGCTC	1 cut(s)	364
EcoRI	GAATTC	2 cut(s)	1195, 1783
EcoRII	CCWGG	1 cut(s)	985
EcoT14I	CCWWGG	4 cut(s)	319, 408, 1857, 2032
EcoT22I	ATGCAT	1 cut(s)	1467
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	4 cut(s)	319, 408, 1857, 2032
Esp3I	CGTCTC	1 cut(s)	531
FaqI	GGGAC	2 cut(s)	258, 993
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	645, 1112, 1842
FokI	GGATG	4 cut(s)	230, 716, 928, 2015
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	645, 1112, 1842
FspAI	RTGCGCAY	1 cut(s)	824
FspBI	CTAG	6 cut(s)	50, 185, 846, 882, 1212, 1914
FspI	TGCGCA	1 cut(s)	824
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	3 cut(s)	645, 1112, 1842
GsuI	CTGGAG	2 cut(s)	1019, 1068
HaeIII	GGCC	3 cut(s)	1498, 1731, 1814
HapII	CCGG	7 cut(s)	25, 32, 391, 938, 972, 1706, 1801
HhaI	GCGC	1 cut(s)	825
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HpaII	CCGG	7 cut(s)	25, 32, 391, 938, 972, 1706, 1801
HphI	GGTGA	3 cut(s)	1120, 1613, 1902
Hpy166II	GTNNAC	5 cut(s)	58, 464, 1217, 1400, 1541
Hpy188I	TCNGA	8 cut(s)	493, 498, 594, 681, 1194, 1228, 1308, 1929
Hpy8I	GTNNAC	5 cut(s)	58, 464, 1217, 1400, 1541
Hpy99I	CGWCG	3 cut(s)	59, 62, 65
HpyAV	CCTTC	7 cut(s)	301, 452, 704, 1233, 1583, 1652, 1867
HpyCH4III	ACNGT	3 cut(s)	7, 1045, 1404
HpyCH4IV	ACGT	1 cut(s)	1187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 1045, 1085, 1344, 1547, 1737
HpyF3I	CTNAG	3 cut(s)	509, 576, 920
HpySE526I	ACGT	1 cut(s)	1187
HspAI	GCGC	1 cut(s)	823
Kpn2I	TCCGGA	2 cut(s)	31, 390
KroI	GCCGGC	1 cut(s)	937
KroNI	GCCGGC	1 cut(s)	939
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	5 cut(s)	234, 1038, 1352, 1555, 1897
Lsp1109I	GCAGC	2 cut(s)	656, 1123
LweI	GCATC	5 cut(s)	906, 1134, 1347, 1993, 2011
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	6 cut(s)	50, 185, 846, 882, 1212, 1914
MaeII	ACGT	1 cut(s)	1187
MaeIII	GTNAC	7 cut(s)	118, 624, 989, 1257, 1622, 1661, 1908
MalI	GATC	6 cut(s)	269, 495, 844, 852, 868, 1752
MboI	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
MflI	RGATCY	2 cut(s)	842, 850
MhlI	GDGCHC	5 cut(s)	366, 953, 1402, 1543, 1964
MlyI	GAGTC	6 cut(s)	54, 398, 575, 598, 818, 1075
MmeI	TCCRAC	1 cut(s)	1331
Mph1103I	ATGCAT	1 cut(s)	1467
MroI	TCCGGA	2 cut(s)	31, 390
MroNI	GCCGGC	1 cut(s)	937
MroXI	GAANNNNTTC	3 cut(s)	398, 964, 1386
MseI	TTAA	9 cut(s)	201, 765, 929, 1017, 1317, 1449, 1565, 1725, 1805
MslI	CAYNNNNRTG	4 cut(s)	830, 1820, 1967, 2044
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	7 cut(s)	25, 32, 391, 938, 972, 1706, 1801
MspR9I	CCNGG	3 cut(s)	987, 1706, 1707
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	6 cut(s)	143, 1045, 1085, 1344, 1547, 1737
NaeI	GCCGGC	1 cut(s)	939
NciI	CCSGG	2 cut(s)	1706, 1707
NcoI	CCATGG	2 cut(s)	319, 1857
NdeII	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
NgoMIV	GCCGGC	1 cut(s)	937
NlaIV	GGNNCC	2 cut(s)	1348, 1813
NmuCI	GTSAC	2 cut(s)	989, 1908
NsbI	TGCGCA	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	1467
NspI	RCATGY	3 cut(s)	386, 1469, 1630
PaeI	GCATGC	1 cut(s)	1469
PceI	AGGCCT	1 cut(s)	1498
PciI	ACATGT	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	939
PdmI	GAANNNNTTC	3 cut(s)	398, 964, 1386
PfeI	GAWTC	8 cut(s)	312, 876, 1160, 1229, 1678, 1940, 1990, 2016
PflMI	CCANNNNNTGG	1 cut(s)	1747
PinAI	ACCGGT	2 cut(s)	24, 1800
PkrI	GCNGC	3 cut(s)	646, 1113, 1843
PleI	GAGTC	6 cut(s)	53, 398, 575, 597, 817, 1075
PpsI	GAGTC	6 cut(s)	53, 398, 575, 597, 817, 1075
PscI	ACATGT	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	1017
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	985
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	2 cut(s)	1348, 1813
PspPI	GGNCC	4 cut(s)	13, 412, 526, 1812
PstNI	CAGNNNCTG	1 cut(s)	1553
PsuI	RGATCY	2 cut(s)	842, 850
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	5 cut(s)	465, 886, 1288, 1611, 2027
RsaNI	GTAC	5 cut(s)	464, 885, 1287, 1610, 2026
RseI	CAYNNNNRTG	4 cut(s)	830, 1820, 1967, 2044
SacI	GAGCTC	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	9 cut(s)	201, 765, 929, 1017, 1317, 1449, 1565, 1725, 1805
SatI	GCNGC	3 cut(s)	645, 1112, 1842
Sau3AI	GATC	6 cut(s)	267, 493, 842, 850, 866, 1750
Sau96I	GGNCC	4 cut(s)	13, 412, 526, 1812
ScaI	AGTACT	1 cut(s)	886
SchI	GAGTC	6 cut(s)	54, 398, 575, 598, 818, 1075
ScrFI	CCNGG	3 cut(s)	987, 1706, 1707
SduI	GDGCHC	5 cut(s)	366, 953, 1402, 1543, 1964
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	5 cut(s)	906, 1134, 1347, 1993, 2011
SfcI	CTRYAG	1 cut(s)	743
SgrDI	CGTCGACG	1 cut(s)	56
SinI	GGWCC	3 cut(s)	13, 412, 526
SmaI	CCCGGG	1 cut(s)	1707
SmiMI	CAYNNNNRTG	4 cut(s)	830, 1820, 1967, 2044
SmlI	CTYRAG	4 cut(s)	248, 365, 862, 1003
SmoI	CTYRAG	4 cut(s)	248, 365, 862, 1003
SphI	GCATGC	1 cut(s)	1469
SseBI	AGGCCT	1 cut(s)	1498
SsiI	CCGC	1 cut(s)	1841
SspMI	CTAG	6 cut(s)	50, 185, 846, 882, 1212, 1914
SstI	GAGCTC	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	1498
StyD4I	CCNGG	3 cut(s)	985, 1704, 1705
StyI	CCWWGG	4 cut(s)	319, 408, 1857, 2032
TaaI	ACNGT	3 cut(s)	7, 1045, 1404
TaiI	ACGT	1 cut(s)	1190
TaqI	TCGA	5 cut(s)	57, 402, 587, 1241, 2019
TatI	WGTACW	2 cut(s)	463, 884
TauI	GCSGC	1 cut(s)	1844
TfiI	GAWTC	8 cut(s)	312, 876, 1160, 1229, 1678, 1940, 1990, 2016
Tru1I	TTAA	9 cut(s)	201, 765, 929, 1017, 1317, 1449, 1565, 1725, 1805
Tru9I	TTAA	9 cut(s)	201, 765, 929, 1017, 1317, 1449, 1565, 1725, 1805
TscAI	CASTG	3 cut(s)	784, 1696, 1822
TseFI	GTSAC	2 cut(s)	989, 1908
TseI	GCWGC	2 cut(s)	644, 1111
Tsp45I	GTSAC	2 cut(s)	989, 1908
TspDTI	ATGAA	8 cut(s)	320, 579, 1575, 1776, 1791, 1886, 1953, 1985
TspGWI	ACGGA	1 cut(s)	1304
TspMI	CCCGGG	1 cut(s)	1705
TspRI	CASTG	3 cut(s)	784, 1696, 1822
Van91I	CCANNNNNTGG	1 cut(s)	1747
VneI	GTGCAC	2 cut(s)	1398, 1539
VpaK11BI	GGWCC	3 cut(s)	13, 412, 526
VspI	ATTAAT	1 cut(s)	1017
XapI	RAATTY	8 cut(s)	80, 398, 687, 1066, 1195, 1699, 1783, 2009
XbaI	TCTAGA	1 cut(s)	845
XceI	RCATGY	3 cut(s)	386, 1469, 1630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1638
XmaI	CCCGGG	1 cut(s)	1705
XmiI	GTMKAC	1 cut(s)	57
XmnI	GAANNNNTTC	3 cut(s)	398, 964, 1386
XspI	CTAG	6 cut(s)	50, 185, 846, 882, 1212, 1914
ZrmI	AGTACT	1 cut(s)	886
Zsp2I	ATGCAT	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.