Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004285

Physical Location & Seq

Genomic Coordinates Reverse (-)

11580215 .. 11583638

Gene Structure 3424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1155800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGACGGTGGAGGACCGTTTTCCGGTGGGCATGCGAGTGTTGGCCGTCGACGACAACTCGACTTGTCTCAGACTTTTGGAGGAGCTGCTTGTCAAATGCCAGTATCAAGTTACTACGACGAATCAGGCAGTCAAGGCACTGCAGATGTTGAGGGAAAACAGAAATAATTTTGACTTGGTGATCAGTGATGTTAATATGCCAGACATGGATGGCTTTAAGCTGCTTGAACTATTGGGACTCGAAATGGACCTGCCTGTAATCATGTTGTCGGGATATAGTGATAAAGATCTTGTGATGAAGGGAATCTCCCACGGTGCTTGTGACTATTTGTTGAAACCTGTTCGAATTGAAGAGCTCAAGAACATCTGGCAACATGTAGTCCGGAGAAAGAAGTTTTACCCTGAGGACCAAAATAAGTCTTCCAGTCAAGACAAAGGTTGCCTTGAAGCTGGAGAAGGTGGACACGCGGTTTCACCATCAGGTAGTTCAGATTGGAGTGGCAGATTCAACAGGAAAAGAAAGGAGCAAAATGAAGATGAGGAAGAAGAAGATGAAGAGGAGGAACACGAGAATGAGGAATTGTCATACCAAAAGAAGCCTCGGGTAGTTTGGTCCAGGGAGCTGCACCAGAAGTTTGTTGCAGCTGTAGATCAGTTGGGATATGATAAGGCTGTTCCGAAGAAAATTCTTGACCTAATGAATGTTGAAGGACTCACAAGGGAAAATAAGTTTAGGCAATACCTCAAAAAACTCCGCAATCCTGCTTTTGGGGTGAGAGATTCTTCTTACACGCGCATGGCTGCACTAGATGGATTTGGAGATGCACAGTCCTTAGTTGGATCACAAAGGTTCTCAAATGCTGGTTTGTCACCATACATACCCAGTATGATGCTTGGTAGATTAAACTCCACTGCTGGTTTGAGCATAAGAGGAACTACTTCCGGACTGGTCCAACCTGGTCACTCCCAGAACTTAAGCAACTATTTTAATATTCCCACGAAGCTCCAGCCGGTTCTGCCTGGAAACCAAAGTCCAAATGTGTATCAAACAATTCCAGCATCGTTAGAGTTCAAACAATCGCAACAGAGCAAGTATATCACTCACATTGGCGAGTCGTCTCCCAGTAGTGATTCAACAAGTTATGCCATCTCCTCTAGCTTTCCAGGCGCAAGAGTGTCTGCAAGCTCAATCTTTTCTGATTCCAATGCTTCAAGCAATCCTTTGATACTACACGGGACCCCACAACAAACACATGGCACGGGAGTTGTTGGAGATCAGTCTTCTCTCGGAGTGGCATCATTGAATCCAGAATCATTTGACATTGGCACCTCCTCGAAGTTTCTAGATCACAATCGATGTAGTGATAGCTGGCAGGTTGCAGTTCAGTTATCTGATTTTCCGATGAATTCATTGCCAATGAGCGAGCCTGTCCATTATGGTCAGCTATATGCTAATAACTTGGGTTTTGCTTCTAGTGGGCCTCAAGTTGCAACTGTTCCAAGTGATTTTTCATCTAGTGTACTTTCAGCCCCTGCTGTGGAACTAAGAGGAAGTATACTGAATCAGGAAGGCTTGATTGGAGATGTTGTGCCGACCTTGACTTGCTCACCAAGGCAAATGTGGGAAGAACATAAGCACGATTTCAACCACAATTTCGATCTATCTTTCAATGCCGATAATTCCATGGTTTCTGCCAATGTTCTTCTCGGACCTGTAAGCCCGAGTTTGGACCAAAACGATGCAGTCTGCAGTGAAAAGATGACTTCATCTTTATTTGACATATTAGATGGTGTCACTTCACCTGTCATGCAGCCCAGTGAGTTCCAGAAATCCGCCACAACAATGAATCCCACTGAGATCTACTCCTGGGAGCAAACAAAGTCACCCGATGATGTCGCTCAAAATACTTACGGACCTTGGAATGATGTTATGACTGCAATTCTGAAACGGGGACAGAATGAGAATGTGTTGTCGACGGATGGAGATTTTGGATTCGATGCTTACTCTCCCGGATCACAGCAGTTTATTCCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

679

Amino Acids

74.79

Weight (kDa)

4.96

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	13 - 121	1.4e-24	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58080
fragaria_vesca	FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_1g01300 FvH4_6g29050
malus_domestica	MD15G1155800.v1.1
prunus_persica	Prupe.7G259300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086131 RchiOBHm_Chr2g0133831
rosa_laevigata	RLG00000015746 RLG00000019368
rosa_multiflora	Rmu_co8376609.1_g000001 Rmu_sc0001782.1_g000042 Rmu_sc0004510.1_g000003
rosa_roxburghii	Rroxscaffold_2G00110780 Rroxscaffold_2G00154780
rosa_rugosa	Rorug01G0465900 Rorug01G0465900 Rorug02G0313900
rosa_samantha	Rh2AG015600 Rh2AG367400 Rh2BG015700 Rh2BG372800 Rh2CG016600 Rh2CG350700 Rh2DG017700 Rh2DG389900
rosa_wichuraiana	Rw2G001360 Rw2G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	258, 1363
AccB1I	GGYRCC	1 cut(s)	1325
AccI	GTMKAC	3 cut(s)	48, 1555, 1973
AccII	CGCG	2 cut(s)	467, 793
AccIII	TCCGGA	2 cut(s)	381, 941
AciI	CCGC	3 cut(s)	467, 754, 1833
AclWI	GGATC	2 cut(s)	847, 2020
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	684, 1405
AfaI	GTAC	1 cut(s)	1521
AfiI	CCNNNNNNNGG	4 cut(s)	22, 767, 1537, 1726
AflII	CTTAAG	1 cut(s)	973
AflIII	ACRYGT	1 cut(s)	373
AjnI	CCWGG	5 cut(s)	614, 955, 1018, 1162, 1865
AjuI	GAANNNNNNNTTGG	4 cut(s)	1492, 1524, 1560, 1592
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	71, 1122
AlwI	GGATC	2 cut(s)	847, 2020
AlwNI	CAGNNNCTG	1 cut(s)	1532
Ama87I	CYCGRG	2 cut(s)	600, 1720
Aor13HI	TCCGGA	2 cut(s)	381, 941
AoxI	GGCC	2 cut(s)	42, 1478
ApeKI	GCWGC	6 cut(s)	85, 220, 622, 641, 800, 1810
ApoI	RAATTY	2 cut(s)	684, 1405
Asp700I	GAANNNNTTC	1 cut(s)	937
AspLEI	GCGC	2 cut(s)	795, 1169
AsuC2I	CCSGG	1 cut(s)	2010
AsuHPI	GGTGA	7 cut(s)	190, 465, 784, 861, 1599, 1791, 1875
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	600, 1720
AvaII	GGWCC	9 cut(s)	13, 247, 406, 612, 949, 1236, 1709, 1729, 1913
AxyI	CCTNAGG	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	1325
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	566
BbsI	GAAGAC	2 cut(s)	411, 1272
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	6 cut(s)	72, 207, 609, 653, 787, 1822
BccI	CCATC	6 cut(s)	203, 484, 803, 1154, 1781, 1973
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	5 cut(s)	616, 957, 1020, 1164, 1867
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	2010
BcoDI	GTCTC	2 cut(s)	71, 1122
BfaI	CTAG	5 cut(s)	806, 1155, 1343, 1473, 1515
BfmI	CTRYAG	3 cut(s)	140, 645, 1747
BfrI	CTTAAG	1 cut(s)	973
BfuAI	ACCTGC	2 cut(s)	258, 1363
BglII	AGATCT	2 cut(s)	286, 1857
BisI	GCNGC	6 cut(s)	86, 221, 623, 642, 801, 1811
BlsI	GCNGC	6 cut(s)	87, 222, 624, 643, 802, 1812
Bme1390I	CCNGG	6 cut(s)	616, 957, 1020, 1164, 1867, 2010
Bme18I	GGWCC	9 cut(s)	13, 247, 406, 612, 949, 1236, 1709, 1729, 1913
BmeT110I	CYCGRG	2 cut(s)	600, 1720
BmiI	GGNNCC	3 cut(s)	1237, 1238, 1327
BmrFI	CCNGG	6 cut(s)	616, 957, 1020, 1164, 1867, 2010
BmrI	ACTGGG	3 cut(s)	876, 1116, 1809
BmsI	GCATC	6 cut(s)	811, 879, 1067, 1304, 1729, 1987
BmuI	ACTGGG	3 cut(s)	876, 1116, 1809
BpiI	GAAGAC	2 cut(s)	411, 1272
BplI	GAGNNNNNCTC	2 cut(s)	1847, 1879
BpmI	CTGGAG	2 cut(s)	471, 989
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	2 cut(s)	341, 1467
BpuMI	CCSGG	1 cut(s)	2010
Bsa29I	ATCGAT	1 cut(s)	1354
BsaBI	GATNNNNATC	2 cut(s)	285, 1350
BsaJI	CCNNGG	7 cut(s)	310, 599, 615, 1610, 1683, 1866, 1916
BsaWI	WCCGGW	3 cut(s)	22, 381, 941
BsaXI	ACNNNNNCTCC	2 cut(s)	1572, 1602
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 767, 1537, 1726
Bse118I	RCCGGY	1 cut(s)	1009
Bse1I	ACTGG	6 cut(s)	100, 423, 882, 951, 1122, 1815
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	1409
Bse8I	GATNNNNATC	2 cut(s)	285, 1350
BseAI	TCCGGA	2 cut(s)	381, 941
BseBI	CCWGG	5 cut(s)	616, 957, 1020, 1164, 1867
BseCI	ATCGAT	1 cut(s)	1354
BseDI	CCNNGG	7 cut(s)	310, 599, 615, 1610, 1683, 1866, 1916
BseGI	GGATG	2 cut(s)	214, 1984
BseJI	GATNNNNATC	2 cut(s)	285, 1350
BseLI	CCNNNNNNNGG	4 cut(s)	22, 767, 1537, 1726
BseMI	GCAATG	1 cut(s)	1409
BseMII	CTCAG	3 cut(s)	82, 393, 1845
BseNI	ACTGG	6 cut(s)	100, 423, 882, 951, 1122, 1815
BseRI	GAGGAG	4 cut(s)	95, 572, 1141, 1321
BseXI	GCAGC	6 cut(s)	72, 207, 609, 653, 787, 1822
BsgI	GTGCAG	2 cut(s)	608, 786
Bsh1236I	CGCG	2 cut(s)	467, 793
BshFI	GGCC	2 cut(s)	44, 1480
BshNI	GGYRCC	1 cut(s)	1325
BshVI	ATCGAT	1 cut(s)	1354
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	600, 1720
BsiSI	CCGG	5 cut(s)	23, 382, 942, 1010, 2010
BslFI	GGGAC	3 cut(s)	249, 1249, 1965
BslI	CCNNNNNNNGG	4 cut(s)	22, 767, 1537, 1726
BsmAI	GTCTC	2 cut(s)	71, 1122
BsmBI	CGTCTC	1 cut(s)	1122
BsmFI	GGGAC	3 cut(s)	249, 1249, 1965
BsnI	GGCC	2 cut(s)	44, 1480
BsoBI	CYCGRG	2 cut(s)	600, 1720
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	2 cut(s)	381, 941
Bsp143I	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
Bsp19I	CCATGG	1 cut(s)	1683
BspACI	CCGC	3 cut(s)	467, 754, 1833
BspANI	GGCC	2 cut(s)	44, 1480
BspCNI	CTCAG	3 cut(s)	81, 394, 1846
BspDI	ATCGAT	1 cut(s)	1354
BspEI	TCCGGA	2 cut(s)	381, 941
BspFNI	CGCG	2 cut(s)	467, 793
BspLI	GGNNCC	3 cut(s)	1237, 1238, 1327
BspMAI	CTGCAG	2 cut(s)	144, 1751
BspMI	ACCTGC	2 cut(s)	258, 1363
BspPI	GGATC	2 cut(s)	847, 2020
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	1325
BspTI	CTTAAG	1 cut(s)	973
BsrDI	GCAATG	1 cut(s)	1409
BsrFI	RCCGGY	1 cut(s)	1009
BsrI	ACTGG	6 cut(s)	100, 423, 882, 951, 1122, 1815
BssAI	RCCGGY	1 cut(s)	1009
BssECI	CCNNGG	7 cut(s)	310, 599, 615, 1610, 1683, 1866, 1916
BssMI	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
BssNAI	GTATAC	1 cut(s)	1556
BssSI	CACGAG	1 cut(s)	566
BssT1I	CCWWGG	3 cut(s)	1610, 1683, 1916
Bst1107I	GTATAC	1 cut(s)	1556
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	5 cut(s)	616, 957, 1020, 1164, 1867
Bst4CI	ACNGT	5 cut(s)	7, 17, 314, 828, 1495
Bst6I	CTCTTC	2 cut(s)	345, 549
BstAFI	CTTAAG	1 cut(s)	973
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	4 cut(s)	32, 1183, 1370, 1424
BstDEI	CTNAG	5 cut(s)	68, 402, 832, 1544, 1854
BstDSI	CCRYGG	2 cut(s)	310, 1683
BstF5I	GGATG	2 cut(s)	214, 1984
BstFNI	CGCG	2 cut(s)	467, 793
BstHHI	GCGC	2 cut(s)	795, 1169
BstKTI	GATC	9 cut(s)	183, 289, 652, 842, 1276, 1348, 1660, 1860, 2015
BstMAI	GTCTC	2 cut(s)	71, 1122
BstMBI	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 1015, 1164
BstNI	CCWGG	5 cut(s)	616, 957, 1020, 1164, 1867
BstNSI	RCATGY	2 cut(s)	34, 377
BstSCI	CCNGG	6 cut(s)	614, 955, 1018, 1162, 1865, 2008
BstSFI	CTRYAG	3 cut(s)	140, 645, 1747
BstUI	CGCG	2 cut(s)	467, 793
BstV1I	GCAGC	6 cut(s)	72, 207, 609, 653, 787, 1822
BstV2I	GAAGAC	2 cut(s)	411, 1272
BstX2I	RGATCY	2 cut(s)	286, 1857
BstYI	RGATCY	2 cut(s)	286, 1857
BstZ17I	GTATAC	1 cut(s)	1556
Bsu15I	ATCGAT	1 cut(s)	1354
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	44, 1480
BsuTUI	ATCGAT	1 cut(s)	1354
BtgI	CCRYGG	2 cut(s)	310, 1683
BtsCI	GGATG	2 cut(s)	214, 1984
BtsI	GCAGTG	3 cut(s)	137, 909, 1756
BtsIMutI	CAGTG	6 cut(s)	137, 190, 909, 1756, 1822, 1851
BveI	ACCTGC	2 cut(s)	258, 1363
Cac8I	GCNNGC	4 cut(s)	32, 1183, 1370, 1424
CaiI	CAGNNNCTG	1 cut(s)	1532
CfoI	GCGC	2 cut(s)	795, 1169
Cfr10I	RCCGGY	1 cut(s)	1009
ClaI	ATCGAT	1 cut(s)	1354
CsiI	ACCWGGT	1 cut(s)	955
Csp6I	GTAC	1 cut(s)	1520
CspCI	CAANNNNNGTGG	2 cut(s)	299, 334
CviAII	CATG	8 cut(s)	31, 205, 262, 374, 796, 1253, 1684, 1807
CviQI	GTAC	1 cut(s)	1520
DdeI	CTNAG	5 cut(s)	68, 402, 832, 1544, 1854
DpnI	GATC	9 cut(s)	182, 288, 651, 841, 1275, 1347, 1659, 1859, 2014
DpnII	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	345, 549
EarI	CTCTTC	2 cut(s)	345, 549
EciI	GGCGGA	1 cut(s)	1822
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	3 cut(s)	1610, 1683, 1916
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	9 cut(s)	13, 247, 406, 612, 949, 1236, 1709, 1729, 1913
Eco53kI	GAGCTC	1 cut(s)	355
Eco81I	CCTNAGG	1 cut(s)	402
Eco88I	CYCGRG	2 cut(s)	600, 1720
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	1236
EcoRI	GAATTC	1 cut(s)	1405
EcoRII	CCWGG	5 cut(s)	614, 955, 1018, 1162, 1865
EcoT14I	CCWWGG	3 cut(s)	1610, 1683, 1916
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	3 cut(s)	1610, 1683, 1916
Esp3I	CGTCTC	1 cut(s)	1122
FaeI	CATG	8 cut(s)	34, 208, 265, 377, 799, 1256, 1687, 1810
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 1204, 1236
FaqI	GGGAC	3 cut(s)	249, 1249, 1965
FatI	CATG	8 cut(s)	30, 204, 261, 373, 795, 1252, 1683, 1806
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	3 cut(s)	48, 1555, 1973
Fnu4HI	GCNGC	6 cut(s)	86, 221, 623, 642, 801, 1811
FokI	GGATG	2 cut(s)	221, 1991
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	6 cut(s)	86, 221, 623, 642, 801, 1811
FspBI	CTAG	5 cut(s)	806, 1155, 1343, 1473, 1515
GlaI	GCGC	2 cut(s)	794, 1168
GluI	GCNGC	6 cut(s)	86, 221, 623, 642, 801, 1811
GsuI	CTGGAG	2 cut(s)	471, 989
HaeIII	GGCC	2 cut(s)	44, 1480
HapII	CCGG	5 cut(s)	23, 382, 942, 1010, 2010
HhaI	GCGC	2 cut(s)	795, 1169
Hin1II	CATG	8 cut(s)	34, 208, 265, 377, 799, 1256, 1687, 1810
Hin6I	GCGC	2 cut(s)	793, 1167
HinP1I	GCGC	2 cut(s)	793, 1167
HincII	GTYRAC	2 cut(s)	49, 1974
HindII	GTYRAC	2 cut(s)	49, 1974
HpaII	CCGG	5 cut(s)	23, 382, 942, 1010, 2010
HphI	GGTGA	7 cut(s)	190, 465, 784, 861, 1599, 1791, 1875
Hpy166II	GTNNAC	5 cut(s)	49, 461, 1520, 1556, 1974
Hpy188I	TCNGA	9 cut(s)	71, 490, 678, 1198, 1289, 1393, 1401, 1709, 1944
Hpy8I	GTNNAC	5 cut(s)	49, 461, 1520, 1556, 1974
Hpy99I	CGWCG	4 cut(s)	50, 53, 121, 1978
HpyAV	CCTTC	4 cut(s)	292, 449, 701, 1562
HpyCH4III	ACNGT	5 cut(s)	7, 17, 314, 828, 1495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 1015, 1164
HpyF3I	CTNAG	5 cut(s)	68, 402, 832, 1544, 1854
Hsp92II	CATG	8 cut(s)	34, 208, 265, 377, 799, 1256, 1687, 1810
HspAI	GCGC	2 cut(s)	793, 1167
KflI	GGGWCCC	1 cut(s)	1236
Kpn2I	TCCGGA	2 cut(s)	381, 941
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	5 cut(s)	82, 523, 619, 1008, 1870
Lsp1109I	GCAGC	6 cut(s)	72, 207, 609, 653, 787, 1822
LweI	GCATC	6 cut(s)	811, 879, 1067, 1304, 1729, 1987
MabI	ACCWGGT	1 cut(s)	955
MaeI	CTAG	5 cut(s)	806, 1155, 1343, 1473, 1515
MaeIII	GTNAC	6 cut(s)	109, 320, 867, 959, 1792, 1881
MalI	GATC	9 cut(s)	182, 288, 651, 841, 1275, 1347, 1659, 1859, 2014
MboI	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
MflI	RGATCY	2 cut(s)	286, 1857
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	9 cut(s)	166, 345, 578, 684, 1050, 1405, 1651, 1678, 1938
MlyI	GAGTC	3 cut(s)	231, 705, 1121
MmeI	TCCRAC	3 cut(s)	817, 976, 1249
MroI	TCCGGA	2 cut(s)	381, 941
MroXI	GAANNNNTTC	1 cut(s)	937
MseI	TTAA	5 cut(s)	192, 216, 902, 974, 987
MslI	CAYNNNNRTG	4 cut(s)	35, 570, 794, 1841
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	973
MspI	CCGG	5 cut(s)	23, 382, 942, 1010, 2010
MspR9I	CCNGG	6 cut(s)	616, 957, 1020, 1164, 1867, 2010
MvaI	CCWGG	5 cut(s)	616, 957, 1020, 1164, 1867
MvnI	CGCG	2 cut(s)	467, 793
MwoI	GCNNNNNNNGC	3 cut(s)	134, 1015, 1164
NciI	CCSGG	1 cut(s)	2010
NcoI	CCATGG	1 cut(s)	1683
NdeII	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
NlaIII	CATG	8 cut(s)	34, 208, 265, 377, 799, 1256, 1687, 1810
NlaIV	GGNNCC	3 cut(s)	1237, 1238, 1327
NmuCI	GTSAC	5 cut(s)	320, 867, 959, 1792, 1881
NspI	RCATGY	2 cut(s)	34, 377
NspV	TTCGAA	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	34
PciI	ACATGT	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	937
PfoI	TCCNGGA	1 cut(s)	2008
PkrI	GCNGC	6 cut(s)	87, 222, 624, 643, 802, 1812
PleI	GAGTC	3 cut(s)	231, 705, 1120
PpsI	GAGTC	3 cut(s)	231, 705, 1120
PpuMI	RGGWCCY	1 cut(s)	1236
PscI	ACATGT	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	1236
Psp6I	CCWGG	5 cut(s)	614, 955, 1018, 1162, 1865
PspGI	CCWGG	5 cut(s)	614, 955, 1018, 1162, 1865
PspN4I	GGNNCC	3 cut(s)	1237, 1238, 1327
PspPPI	RGGWCCY	1 cut(s)	1236
PstI	CTGCAG	2 cut(s)	144, 1751
PstNI	CAGNNNCTG	1 cut(s)	1532
PsuI	RGATCY	2 cut(s)	286, 1857
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	1521
RsaNI	GTAC	1 cut(s)	1520
RseI	CAYNNNNRTG	4 cut(s)	35, 570, 794, 1841
SacI	GAGCTC	1 cut(s)	357
SalI	GTCGAC	2 cut(s)	47, 1972
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	192, 216, 902, 974, 987
SatI	GCNGC	6 cut(s)	86, 221, 623, 642, 801, 1811
Sau3AI	GATC	9 cut(s)	180, 286, 649, 839, 1273, 1345, 1657, 1857, 2012
SchI	GAGTC	3 cut(s)	231, 705, 1121
ScrFI	CCNGG	6 cut(s)	616, 957, 1020, 1164, 1867, 2010
SduI	GDGCHC	1 cut(s)	357
SexAI	ACCWGGT	1 cut(s)	955
SfaNI	GCATC	6 cut(s)	811, 879, 1067, 1304, 1729, 1987
SfcI	CTRYAG	3 cut(s)	140, 645, 1747
SfuI	TTCGAA	1 cut(s)	343
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	9 cut(s)	13, 247, 406, 612, 949, 1236, 1709, 1729, 1913
SmiMI	CAYNNNNRTG	4 cut(s)	35, 570, 794, 1841
SmlI	CTYRAG	3 cut(s)	356, 973, 1482
SmoI	CTYRAG	3 cut(s)	356, 973, 1482
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	9 cut(s)	166, 345, 578, 684, 1050, 1405, 1651, 1678, 1938
SsiI	CCGC	3 cut(s)	467, 754, 1833
SspI	AATATT	1 cut(s)	991
SspMI	CTAG	5 cut(s)	806, 1155, 1343, 1473, 1515
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	6 cut(s)	614, 955, 1018, 1162, 1865, 2008
StyI	CCWWGG	3 cut(s)	1610, 1683, 1916
TaaI	ACNGT	5 cut(s)	7, 17, 314, 828, 1495
TaqI	TCGA	9 cut(s)	48, 59, 240, 343, 1334, 1354, 1656, 1973, 1995
TasI	AATT	9 cut(s)	166, 345, 578, 684, 1050, 1405, 1651, 1678, 1938
TatI	WGTACW	1 cut(s)	1519
Tru1I	TTAA	5 cut(s)	192, 216, 902, 974, 987
Tru9I	TTAA	5 cut(s)	192, 216, 902, 974, 987
TscAI	CASTG	6 cut(s)	144, 190, 916, 1756, 1822, 1858
TseFI	GTSAC	5 cut(s)	320, 867, 959, 1792, 1881
TseI	GCWGC	6 cut(s)	85, 220, 622, 641, 800, 1810
Tsp45I	GTSAC	5 cut(s)	320, 867, 959, 1792, 1881
TspDTI	ATGAA	9 cut(s)	311, 546, 567, 713, 1398, 1418, 1500, 1755, 1859
TspGWI	ACGGA	2 cut(s)	1926, 1991
TspRI	CASTG	6 cut(s)	144, 190, 916, 1756, 1822, 1858
Vha464I	CTTAAG	1 cut(s)	973
VpaK11BI	GGWCC	9 cut(s)	13, 247, 406, 612, 949, 1236, 1709, 1729, 1913
XapI	RAATTY	2 cut(s)	684, 1405
XbaI	TCTAGA	1 cut(s)	1342
XceI	RCATGY	2 cut(s)	34, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1617
XmiI	GTMKAC	3 cut(s)	48, 1555, 1973
XmnI	GAANNNNTTC	1 cut(s)	937
XspI	CTAG	5 cut(s)	806, 1155, 1343, 1473, 1515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.