Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Reverse (-)

23637415 .. 23640973

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCTGGGATGTACAATCAAGACGGCGGCGGAGGTGCGCCTATTCCGTCGTACGGTGGTGATGGATACGGCGGAGGGGGAGGTTATGGAGGTGGTGATGCTGGATATGGTGGACGCGGTGCCTCTGGCGGAGGTAGTTACGGCGGACGCGGTGGTTACGGTGGAGGCGGTGGTAGAGGAAATCGAGGCGGTGGAGGTGGTGGATATCAAGGAGGTGATCGCGGTGGAAGAGGAAGTGGCGGCGGAGGCAGAGATGGAGATTGGCGTTGTCCCAACCCCAGTTGTGGGAACGTGAACTTTGCAAGGAGAGTTGAATGTAACAAGTGTGGTGCACTTGCTCCTTCTGGTACTAGTTCTGGTGCTAATGATCGTGGAGGTGGTGGATATAGCCGAGGTGGAGGTGACAGTGATCGTGGGGGTGGTCGTGGTGGTAGAAACGATAGTGGTAGGAGCTATGAGAGTAGTAGATATGATGGTGGAAGTAGGAGTGGTGGTAGCTATGGTAGTGGTAGTCAGAGGGAAAATGGTTCGTATGGTCAGGCTCCTCCTCCTGCTGCAGCTATTCCATCCTACGATGGTTCTGGAAGTTATCCTCCACCCACGGGTTATGGAATGGAAGCTGTTCCCCCGCCTACAAGCTATTCTGGTGGCCCGCCGTCATATGGTGGTCCACGAGGGGGTTATGGCAGTGATGCACCGAGCACTGGTGGTCGTGGTGGTAGGAGTGGCGGCTATGATGGTGGTAGTGCTCCTCGACGGCAGGAAGCTAGTTATGAAGATGCAGCTACTGAAAAAGTCAAGCAGTGCGATGCTGATTGTGATGATAATTGTGATAATGCTAGAATATACATCTCTAATTTACCTCCGGATGTGACAACTGATGAACTCAAGGATCTCTTTGGTGGCATTGGCCAAGTTGGAAGAATTAAGCAGAAGCGTGGTTACAAAGATCAGTGGCCCTATAATATTAAGATTTACACTGATGAGAAGGGTAACTATAAAGGTGACGCCTGTCTGGCTTATGAAGATCCCAGCGCTGCACACTCTGCAGGCGGCTTTTTCAACAATTACGAAATGAGGGGGAACAAGATTAGTGTAACGATGGCAGAAAAGTCTGCGCCCCGTGCTCCTACCTTTGACCAGAGAGGTGGGGGTAGAGGAGGAGGAGGTGGTGGCTATGGTGGTGGTGGGGGAGACAGAAGAAGAGACAACTACAGTTCAGGGCCAGACAGAAACCACCATGGGGGAAACCGGTCTCGTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

422

Amino Acids

42.32

Weight (kDa)

8.73

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	84 - 115	3.8e-07	Zn-finger in Ran binding protein and others
RRM_1	PF00076	282 - 312	9.6e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	3 cut(s)	117, 150, 222
AccIII	TCCGGA	1 cut(s)	865
AclWI	GGATC	2 cut(s)	900, 1022
AcoI	YGGCCR	1 cut(s)	910
AcyI	GRCGYC	1 cut(s)	1008
AfaI	GTAC	3 cut(s)	14, 53, 349
AfeI	AGCGCT	1 cut(s)	1036
AfiI	CCNNNNNNNGG	8 cut(s)	53, 284, 285, 602, 662, 677, 704, 1243
AgeI	ACCGGT	1 cut(s)	1251
AgsI	TTSAA	2 cut(s)	314, 1063
AhlI	ACTAGT	1 cut(s)	350
AluBI	AGCT	7 cut(s)	453, 498, 560, 620, 639, 767, 785
AluI	AGCT	7 cut(s)	453, 498, 560, 620, 639, 767, 785
Alw21I	GWGCWC	4 cut(s)	334, 704, 751, 1129
Alw26I	GTCTC	3 cut(s)	1188, 1200, 1260
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	900, 1022
AlwNI	CAGNNNCTG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	865
Aor51HI	AGCGCT	1 cut(s)	1036
AoxI	GGCC	4 cut(s)	649, 910, 956, 1223
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	4 cut(s)	554, 557, 782, 1037
AsiGI	ACCGGT	1 cut(s)	1251
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	3 cut(s)	40, 1037, 1120
AspS9I	GGNCC	4 cut(s)	650, 668, 957, 1223
AsuHPI	GGTGA	5 cut(s)	71, 107, 227, 413, 1016
AvaII	GGWCC	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	926, 958
BauI	CACGAG	1 cut(s)	672
Bbv12I	GWGCWC	4 cut(s)	334, 704, 751, 1129
BbvI	GCAGC	4 cut(s)	541, 569, 794, 1024
BccI	CCATC	7 cut(s)	56, 248, 467, 569, 574, 731, 1096
BceAI	ACGGC	5 cut(s)	40, 85, 157, 640, 773
BciVI	GTATCC	1 cut(s)	59
BcoDI	GTCTC	3 cut(s)	1188, 1200, 1260
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	3 cut(s)	351, 768, 840
BfmI	CTRYAG	3 cut(s)	555, 1047, 1213
BfoI	RGCGCY	1 cut(s)	1038
BfuI	GTATCC	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	1016
BisI	GCNGC	8 cut(s)	28, 241, 555, 558, 730, 783, 1038, 1054
BlsI	GCNGC	8 cut(s)	29, 242, 556, 559, 731, 784, 1039, 1055
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	4 cut(s)	650, 668, 957, 1223
BmiI	GGNNCC	2 cut(s)	121, 543
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	4 cut(s)	88, 682, 769, 799
BmuI	ACTGGG	1 cut(s)	273
BoxI	GACNNNNGTC	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	1008
BsaI	GGTCTC	1 cut(s)	1260
BsaJI	CCNNGG	3 cut(s)	391, 600, 1240
BsaWI	WCCGGW	2 cut(s)	865, 1251
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	8 cut(s)	53, 284, 285, 602, 662, 677, 704, 1243
Bse118I	RCCGGY	1 cut(s)	1251
Bse1I	ACTGG	2 cut(s)	279, 709
BseAI	TCCGGA	1 cut(s)	865
BseDI	CCNNGG	3 cut(s)	391, 600, 1240
BseGI	GGATG	3 cut(s)	15, 566, 874
BseLI	CCNNNNNNNGG	8 cut(s)	53, 284, 285, 602, 662, 677, 704, 1243
BseNI	ACTGG	2 cut(s)	279, 709
BseRI	GAGGAG	6 cut(s)	534, 537, 741, 1173, 1176, 1179
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	541, 569, 794, 1024
BseYI	CCCAGC	2 cut(s)	5, 1031
BsgI	GTGCAG	1 cut(s)	1023
Bsh1236I	CGCG	3 cut(s)	117, 150, 222
BshFI	GGCC	4 cut(s)	651, 912, 958, 1225
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	1251
BsiHKAI	GWGCWC	4 cut(s)	334, 704, 751, 1129
BsiSI	CCGG	2 cut(s)	866, 1252
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	8 cut(s)	53, 284, 285, 602, 662, 677, 704, 1243
BsmAI	GTCTC	3 cut(s)	1188, 1200, 1260
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	4 cut(s)	651, 912, 958, 1225
Bso31I	GGTCTC	1 cut(s)	1260
Bsp1286I	GDGCHC	4 cut(s)	334, 704, 751, 1129
Bsp13I	TCCGGA	1 cut(s)	865
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
Bsp19I	CCATGG	1 cut(s)	1240
BspANI	GGCC	4 cut(s)	651, 912, 958, 1225
BspEI	TCCGGA	1 cut(s)	865
BspFNI	CGCG	3 cut(s)	117, 150, 222
BspLI	GGNNCC	2 cut(s)	121, 543
BspMAI	CTGCAG	2 cut(s)	559, 1051
BspPI	GGATC	2 cut(s)	900, 1022
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	1260
BsrFI	RCCGGY	1 cut(s)	1251
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	279, 709
BssAI	RCCGGY	1 cut(s)	1251
BssECI	CCNNGG	3 cut(s)	391, 600, 1240
BssMI	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
BssNI	GRCGYC	1 cut(s)	1008
BssSI	CACGAG	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	1240
Bst2BI	CACGAG	1 cut(s)	672
Bst4CI	ACNGT	4 cut(s)	56, 161, 407, 1217
Bst6I	CTCTTC	2 cut(s)	223, 1198
BstACI	GRCGYC	1 cut(s)	1008
BstAPI	GCANNNNNTGC	1 cut(s)	1046
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	653, 1051
BstDSI	CCRYGG	2 cut(s)	600, 1240
BstF5I	GGATG	3 cut(s)	15, 566, 874
BstFNI	CGCG	3 cut(s)	117, 150, 222
BstH2I	RGCGCY	1 cut(s)	1038
BstHHI	GCGC	3 cut(s)	40, 1037, 1120
BstKTI	GATC	6 cut(s)	220, 370, 412, 895, 952, 1030
BstMAI	GTCTC	3 cut(s)	1188, 1200, 1260
BstMBI	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 1016, 1046, 1124
BstPAI	GACNNNNGTC	1 cut(s)	1011
BstSFI	CTRYAG	3 cut(s)	555, 1047, 1213
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	3 cut(s)	117, 150, 222
BstV1I	GCAGC	4 cut(s)	541, 569, 794, 1024
BstX2I	RGATCY	2 cut(s)	892, 1027
BstXI	CCANNNNNNTGG	1 cut(s)	1148
BstYI	RGATCY	2 cut(s)	892, 1027
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	651, 912, 958, 1225
BtgI	CCRYGG	2 cut(s)	600, 1240
BtgZI	GCGATG	1 cut(s)	822
BtsCI	GGATG	3 cut(s)	15, 566, 874
BtsI	GCAGTG	2 cut(s)	694, 809
BtsIMutI	CAGTG	6 cut(s)	412, 694, 702, 809, 959, 978
Cac8I	GCNNGC	2 cut(s)	653, 1051
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	3 cut(s)	40, 1037, 1120
Cfr10I	RCCGGY	1 cut(s)	1251
Cfr13I	GGNCC	4 cut(s)	650, 668, 957, 1223
CseI	GACGC	3 cut(s)	123, 156, 1016
Csp6I	GTAC	3 cut(s)	13, 52, 348
CspAI	ACCGGT	1 cut(s)	1251
CviAII	CATG	1 cut(s)	1241
CviQI	GTAC	3 cut(s)	13, 52, 348
DpnI	GATC	6 cut(s)	219, 369, 411, 894, 951, 1029
DpnII	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	223, 1198
EarI	CTCTTC	2 cut(s)	223, 1198
EciI	GGCGGA	5 cut(s)	45, 87, 144, 159, 258
Eco130I	CCWWGG	1 cut(s)	1240
Eco31I	GGTCTC	1 cut(s)	1260
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	668
Eco47III	AGCGCT	1 cut(s)	1036
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	1240
ErhI	CCWWGG	1 cut(s)	1240
FaeI	CATG	1 cut(s)	1244
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	1240
FauI	CCCGC	2 cut(s)	636, 660
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	8 cut(s)	28, 241, 555, 558, 730, 783, 1038, 1054
FokI	GGATG	3 cut(s)	22, 553, 881
Fsp4HI	GCNGC	8 cut(s)	28, 241, 555, 558, 730, 783, 1038, 1054
FspBI	CTAG	3 cut(s)	351, 768, 840
GlaI	GCGC	3 cut(s)	39, 1036, 1119
GluI	GCNGC	8 cut(s)	28, 241, 555, 558, 730, 783, 1038, 1054
GsaI	CCCAGC	2 cut(s)	9, 1035
HaeII	RGCGCY	1 cut(s)	1038
HaeIII	GGCC	4 cut(s)	651, 912, 958, 1225
HapII	CCGG	2 cut(s)	866, 1252
HgaI	GACGC	3 cut(s)	123, 156, 1016
HhaI	GCGC	3 cut(s)	40, 1037, 1120
Hin1I	GRCGYC	1 cut(s)	1008
Hin1II	CATG	1 cut(s)	1244
Hin6I	GCGC	3 cut(s)	38, 1035, 1118
HinP1I	GCGC	3 cut(s)	38, 1035, 1118
HpaII	CCGG	2 cut(s)	866, 1252
HphI	GGTGA	5 cut(s)	71, 107, 227, 413, 1016
Hpy166II	GTNNAC	4 cut(s)	113, 295, 332, 671
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	3 cut(s)	20, 582, 866
Hpy8I	GTNNAC	4 cut(s)	113, 295, 332, 671
Hpy99I	CGWCG	2 cut(s)	52, 759
HpyAV	CCTTC	2 cut(s)	351, 982
HpyCH4III	ACNGT	4 cut(s)	56, 161, 407, 1217
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	302, 332, 557, 695, 782, 1040, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 1016, 1046, 1124
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	1008
Hsp92II	CATG	1 cut(s)	1244
HspAI	GCGC	3 cut(s)	38, 1035, 1118
Kpn2I	TCCGGA	1 cut(s)	865
Kzo9I	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
LmnI	GCTCC	5 cut(s)	343, 450, 547, 754, 1132
Lsp1109I	GCAGC	4 cut(s)	541, 569, 794, 1024
LweI	GCATC	4 cut(s)	88, 682, 769, 799
MaeI	CTAG	3 cut(s)	351, 768, 840
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	9 cut(s)	137, 155, 317, 401, 871, 941, 992, 1004, 1096
MalI	GATC	6 cut(s)	219, 369, 411, 894, 951, 1029
MboI	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
MboII	GAAGA	6 cut(s)	240, 788, 933, 1037, 1212, 1215
MflI	RGATCY	2 cut(s)	892, 1027
MhlI	GDGCHC	4 cut(s)	334, 704, 751, 1129
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	4 cut(s)	826, 856, 924, 1066
MluNI	TGGCCA	1 cut(s)	912
MmeI	TCCRAC	1 cut(s)	898
Mox20I	TGGCCA	1 cut(s)	912
MroI	TCCGGA	1 cut(s)	865
MroXI	GAANNNNTTC	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	2 cut(s)	927, 969
Msp20I	TGGCCA	1 cut(s)	912
MspI	CCGG	2 cut(s)	866, 1252
MvnI	CGCG	3 cut(s)	117, 150, 222
MwoI	GCNNNNNNNGC	4 cut(s)	246, 1016, 1046, 1124
NcoI	CCATGG	1 cut(s)	1240
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
NlaIII	CATG	1 cut(s)	1244
NlaIV	GGNNCC	2 cut(s)	121, 543
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	3 cut(s)	401, 871, 1004
PdmI	GAANNNNTTC	1 cut(s)	621
Pfl23II	CGTACG	1 cut(s)	51
PinAI	ACCGGT	1 cut(s)	1251
PkrI	GCNGC	8 cut(s)	29, 242, 556, 559, 731, 784, 1039, 1055
PshAI	GACNNNNGTC	1 cut(s)	1011
PspFI	CCCAGC	2 cut(s)	5, 1031
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	121, 543
PspPI	GGNCC	4 cut(s)	650, 668, 957, 1223
PstI	CTGCAG	2 cut(s)	559, 1051
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	892, 1027
RsaI	GTAC	3 cut(s)	14, 53, 349
RsaNI	GTAC	3 cut(s)	13, 52, 348
SaqAI	TTAA	2 cut(s)	927, 969
SatI	GCNGC	8 cut(s)	28, 241, 555, 558, 730, 783, 1038, 1054
Sau3AI	GATC	6 cut(s)	217, 367, 409, 892, 949, 1027
Sau96I	GGNCC	4 cut(s)	650, 668, 957, 1223
SduI	GDGCHC	4 cut(s)	334, 704, 751, 1129
SfaNI	GCATC	4 cut(s)	88, 682, 769, 799
SfcI	CTRYAG	3 cut(s)	555, 1047, 1213
SinI	GGWCC	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	4 cut(s)	826, 856, 924, 1066
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	3 cut(s)	351, 768, 840
StyI	CCWWGG	1 cut(s)	1240
TaaI	ACNGT	4 cut(s)	56, 161, 407, 1217
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	184, 754
TasI	AATT	4 cut(s)	826, 856, 924, 1066
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	4 cut(s)	30, 243, 732, 1056
Tru1I	TTAA	2 cut(s)	927, 969
Tru9I	TTAA	2 cut(s)	927, 969
TscAI	CASTG	6 cut(s)	412, 694, 709, 809, 959, 985
TseFI	GTSAC	3 cut(s)	401, 871, 1004
TseI	GCWGC	4 cut(s)	554, 557, 782, 1037
Tsp45I	GTSAC	3 cut(s)	401, 871, 1004
TspDTI	ATGAA	3 cut(s)	789, 897, 1038
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	6 cut(s)	412, 694, 709, 809, 959, 985
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	3 cut(s)	351, 768, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.