RLG00000036198

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
77369523 .. 77372382
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036198

Sequence Viewer

Length: 1479 bp
ATGGCTGGCATGTATGGTCACGAGGGCGGCGGTGGTACCGCTCCGCCGTATGGATCTAGCGGCGGCGGTGGCTACGGTGGCTCCGGAGGGTATGGAGGCGGTTCCGGAGGTTATGGAGGCGGCGGTGGCGGTGGAGGCTACGGAGGAGGCGGTGGTGGATATGGAGGTAAAGGCGGCGATAGCGGTGGTTACGGTGGTGGAGGCCGTGGTGGTCGAGGTGGGGGAGGTTATGGTGGCGGTGGCGGTGGCGGTCGAGGTGGAGGATATCAAGGCGATCGCGGAGGTGGCCGCGGAGGCGGCGGCAGAGGTGGCCGCGGTGGCAGTGGAAGGGATGGTGATTGGCCTTGCCCTAATCCAGGCTGTGGGAATGTGAACTTTGCGAGAAGAACTGAGTGTAACAAGTGTGGTACGCCCTCTCCTGCGGGTGCTGGTGGCGGTGGTGGAGACCGTGGTGGTGGAGGTGGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAGCCGTGGTGGCAGAGGTGGTAATTATGATGGGGGTCGAGGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTACGATGGAGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCTTATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGCAGTTGCTCCTCCATCTTATGGTGCAGGTGGTAGTTACCCACCATCGTACAATGCTAATTATGGAACAGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGTAGGTGGTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCTTCCTGCTAAATATGATGGCGGATATGGTGGTGGTGGTCGAGGTGGTTATGGAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGCGACGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATATCAAATCTGCCACCAGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGGAGAATCAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAAATTTACACAGATGAGTCGGGAAAGAACAAAGGTGATGCATGTTTAGCCTATGAAGATCCAAATGCTGCACATTCAGCTGGCAGTTTTTACAACGGTCATGACATAAGGGGCTATAAGATCAGTGTTGCAATGGCAGAGAGGTCGGCACCTAGGGCTTACGACAATGGTGGTGGTAGAGGTGGTTATGGGGGCGGTGGGCGCAGGGACAATTATAGAGATGGTGGACCTGACAGACATCAGCATGGATTTTTGTATTCGTTTTGGAGGGATCTTAAACTGGAGACTAAGAGAGACAAGTGGATAATCTCCAAATTGCTTGCTGCTAAGATGCACACATGA
Functional Annotation

Protein Analysis

493

Amino Acids

48.02

Weight (kDa)

9.05

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 110 - 140 1.6e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AarI CACCTGC 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 704
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 2 cut(s) 35, 1285
AccB7I CCANNNNNTGG 3 cut(s) 362, 707, 815
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 3 cut(s) 279, 291, 315
AccIII TCCGGA 2 cut(s) 83, 104
AclWI GGATC 4 cut(s) 61, 1125, 1190, 1416
AcoI YGGCCR 4 cut(s) 286, 310, 871, 1124
AcsI RAATTY 1 cut(s) 1140
AfaI GTAC 5 cut(s) 37, 409, 674, 737, 1112
AfiI CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 3 cut(s) 780, 1061, 1217
AluI AGCT 3 cut(s) 780, 1061, 1217
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 3 cut(s) 438, 1415, 1425
AlwI GGATC 4 cut(s) 61, 1125, 1190, 1416
Aor13HI TCCGGA 2 cut(s) 83, 104
AoxI GGCC 9 cut(s) 202, 286, 310, 341, 791, 871, 880, 951, 1124
ApeKI GCWGC 2 cut(s) 1205, 1460
ApoI RAATTY 1 cut(s) 1140
AsiSI GCGATCGC 1 cut(s) 277
Asp718I GGTACC 1 cut(s) 35
AspA2I CCTAGG 1 cut(s) 1289
AspLEI GCGC 1 cut(s) 1341
AspS9I GGNCC 5 cut(s) 791, 821, 848, 952, 1364
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 6 cut(s) 347, 509, 854, 866, 976, 1184
AvaII GGWCC 3 cut(s) 821, 848, 1364
AvrII CCTAGG 1 cut(s) 1289
BalI TGGCCA 1 cut(s) 1126
BanI GGYRCC 2 cut(s) 35, 1285
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 2 cut(s) 1192, 1447
BceAI ACGGC 3 cut(s) 31, 189, 489
BcgI CGANNNNNNTGC 2 cut(s) 1263, 1297
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 3 cut(s) 438, 1415, 1425
BfaI CTAG 3 cut(s) 57, 1008, 1290
BfmI CTRYAG 3 cut(s) 687, 825, 945
BfuAI ACCTGC 1 cut(s) 704
BglI GCCNNNNNGGC 4 cut(s) 294, 318, 510, 879
BlnI CCTAGG 1 cut(s) 1289
Bme1390I CCNGG 2 cut(s) 357, 852
Bme18I GGWCC 3 cut(s) 821, 848, 1364
BmgT120I GGNCC 5 cut(s) 791, 821, 848, 952, 1364
BmiI GGNNCC 6 cut(s) 37, 82, 103, 684, 954, 1287
BmrFI CCNGG 2 cut(s) 357, 852
BmsI GCATC 4 cut(s) 748, 847, 1165, 1458
BpmI CTGGAG 1 cut(s) 1439
Bpu10I CCTNAGC 1 cut(s) 960
BpuMI CCSGG 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 8 cut(s) 205, 289, 313, 448, 505, 652, 874, 1289
BsaWI WCCGGW 2 cut(s) 83, 104
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 400, 430, 616, 646
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
Bse1I ACTGG 2 cut(s) 790, 1422
Bse3DI GCAATG 2 cut(s) 977, 1275
BseAI TCCGGA 2 cut(s) 83, 104
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 8 cut(s) 205, 289, 313, 448, 505, 652, 874, 1289
BseGI GGATG 2 cut(s) 337, 809
BseLI CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
BseMI GCAATG 2 cut(s) 977, 1275
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 790, 1422
BseRI GAGGAG 4 cut(s) 159, 630, 687, 759
BseX3I CGGCCG 1 cut(s) 871
BseXI GCAGC 2 cut(s) 1192, 1447
BsgI GTGCAG 2 cut(s) 732, 1191
Bsh1236I CGCG 3 cut(s) 279, 291, 315
Bsh1285I CGRYCG 4 cut(s) 253, 277, 874, 1047
BshFI GGCC 9 cut(s) 204, 288, 312, 343, 793, 873, 882, 953, 1126
BshNI GGYRCC 2 cut(s) 35, 1285
BsiEI CGRYCG 4 cut(s) 253, 277, 874, 1047
BsiHKAI GWGCWC 1 cut(s) 943
BsiSI CCGG 3 cut(s) 84, 105, 851
BslFI GGGAC 2 cut(s) 749, 1358
BslI CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
BsmAI GTCTC 3 cut(s) 438, 1415, 1425
BsmFI GGGAC 2 cut(s) 749, 1358
BsnI GGCC 9 cut(s) 204, 288, 312, 343, 793, 873, 882, 953, 1126
Bso31I GGTCTC 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 943
Bsp13I TCCGGA 2 cut(s) 83, 104
Bsp143I GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
BspANI GGCC 9 cut(s) 204, 288, 312, 343, 793, 873, 882, 953, 1126
BspCNI CTCAG 1 cut(s) 382
BspEI TCCGGA 2 cut(s) 83, 104
BspFNI CGCG 3 cut(s) 279, 291, 315
BspHI TCATGA 1 cut(s) 1237
BspLI GGNNCC 6 cut(s) 37, 82, 103, 684, 954, 1287
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 4 cut(s) 61, 1125, 1190, 1416
BspT107I GGYRCC 2 cut(s) 35, 1285
BspTNI GGTCTC 1 cut(s) 438
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 977, 1275
BsrI ACTGG 2 cut(s) 790, 1422
BssECI CCNNGG 8 cut(s) 205, 289, 313, 448, 505, 652, 874, 1289
BssMI GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 2 cut(s) 652, 1289
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 7 cut(s) 77, 194, 449, 677, 986, 1045, 1235
Bst6I CTCTTC 1 cut(s) 652
BstC8I GCNNGC 5 cut(s) 7, 795, 1059, 1219, 1458
BstDEI CTNAG 4 cut(s) 390, 960, 1425, 1464
BstDSI CCRYGG 5 cut(s) 205, 289, 313, 448, 505
BstEII GGTNACC 1 cut(s) 647
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 337, 809
BstFNI CGCG 3 cut(s) 279, 291, 315
BstHHI GCGC 1 cut(s) 1341
BstKTI GATC 6 cut(s) 56, 277, 1120, 1198, 1260, 1411
BstMAI GTCTC 3 cut(s) 438, 1415, 1425
BstMBI GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
BstMCI CGRYCG 4 cut(s) 253, 277, 874, 1047
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 2 cut(s) 13, 1182
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 355, 850
BstSFI CTRYAG 3 cut(s) 687, 825, 945
BstUI CGCG 3 cut(s) 279, 291, 315
BstV1I GCAGC 2 cut(s) 1192, 1447
BstX2I RGATCY 3 cut(s) 53, 1195, 1408
BstYI RGATCY 3 cut(s) 53, 1195, 1408
BstZI CGGCCG 1 cut(s) 871
BsuRI GGCC 9 cut(s) 204, 288, 312, 343, 793, 873, 882, 953, 1126
BtgI CCRYGG 5 cut(s) 205, 289, 313, 448, 505
BtsCI GGATG 2 cut(s) 337, 809
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 1127, 1267
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 5 cut(s) 7, 795, 1059, 1219, 1458
CciI TCATGA 1 cut(s) 1237
CfoI GCGC 1 cut(s) 1341
Cfr13I GGNCC 5 cut(s) 791, 821, 848, 952, 1364
Cfr42I CCGCGG 2 cut(s) 292, 316
Csp6I GTAC 5 cut(s) 36, 408, 673, 736, 1111
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 5 cut(s) 10, 1179, 1238, 1382, 1476
CviQI GTAC 5 cut(s) 36, 408, 673, 736, 1111
DdeI CTNAG 4 cut(s) 390, 960, 1425, 1464
DpnI GATC 6 cut(s) 55, 276, 1119, 1197, 1259, 1410
DpnII GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
EaeI YGGCCR 4 cut(s) 286, 310, 871, 1124
EagI CGGCCG 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 652
EciI GGCGGA 2 cut(s) 33, 918
EclXI CGGCCG 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 652, 1289
Eco31I GGTCTC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 266
Eco47I GGWCC 3 cut(s) 821, 848, 1364
Eco52I CGGCCG 1 cut(s) 871
Eco91I GGTNACC 1 cut(s) 647
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 355
EcoRV GATATC 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 652, 1289
EcoT22I ATGCAT 1 cut(s) 1180
ErhI CCWWGG 2 cut(s) 652, 1289
FaeI CATG 5 cut(s) 13, 1182, 1241, 1385, 1479
FaqI GGGAC 2 cut(s) 749, 1358
FatI CATG 5 cut(s) 9, 1178, 1237, 1381, 1475
FauI CCCGC 1 cut(s) 415
FokI GGATG 2 cut(s) 344, 796
FspBI CTAG 3 cut(s) 57, 1008, 1290
GlaI GCGC 1 cut(s) 1340
GsuI CTGGAG 1 cut(s) 1439
HaeIII GGCC 9 cut(s) 204, 288, 312, 343, 793, 873, 882, 953, 1126
HapII CCGG 3 cut(s) 84, 105, 851
HhaI GCGC 1 cut(s) 1341
Hin1II CATG 5 cut(s) 13, 1182, 1241, 1385, 1479
Hin6I GCGC 1 cut(s) 1339
HinP1I GCGC 1 cut(s) 1339
HinfI GANTC 3 cut(s) 1011, 1092, 1154
HpaII CCGG 3 cut(s) 84, 105, 851
HphI GGTGA 6 cut(s) 347, 509, 854, 866, 976, 1184
Hpy166II GTNNAC 2 cut(s) 373, 1364
Hpy188III TCNNGA 5 cut(s) 20, 84, 105, 1158, 1238
Hpy8I GTNNAC 2 cut(s) 373, 1364
Hpy99I CGWCG 1 cut(s) 980
HpyAV CCTTC 3 cut(s) 321, 548, 893
HpyCH4III ACNGT 7 cut(s) 77, 194, 449, 677, 986, 1045, 1235
HpyCH4IV ACGT 1 cut(s) 1105
HpyCH4V TGCA 9 cut(s) 689, 713, 761, 860, 1057, 1178, 1208, 1268, 1471
HpyF3I CTNAG 4 cut(s) 390, 960, 1425, 1464
HpySE526I ACGT 1 cut(s) 1105
Hsp92II CATG 5 cut(s) 13, 1182, 1241, 1385, 1479
HspAI GCGC 1 cut(s) 1339
Kpn2I TCCGGA 2 cut(s) 83, 104
KpnI GGTACC 1 cut(s) 39
KspI CCGCGG 2 cut(s) 292, 316
Kzo9I GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
LmnI GCTCC 5 cut(s) 46, 86, 688, 700, 946
Lsp1109I GCAGC 2 cut(s) 1192, 1447
LweI GCATC 4 cut(s) 748, 847, 1165, 1458
MaeI CTAG 3 cut(s) 57, 1008, 1290
MaeII ACGT 1 cut(s) 1105
MaeIII GTNAC 7 cut(s) 17, 188, 395, 647, 722, 998, 1039
MalI GATC 6 cut(s) 55, 276, 1119, 1197, 1259, 1410
MbiI CCGCTC 1 cut(s) 41
MboI GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
MboII GAAGA 3 cut(s) 396, 669, 1205
MflI RGATCY 3 cut(s) 53, 1195, 1408
MhlI GDGCHC 1 cut(s) 943
MlsI TGGCCA 1 cut(s) 1126
MluCI AATT 6 cut(s) 523, 571, 745, 1140, 1348, 1451
MluNI TGGCCA 1 cut(s) 1126
MlyI GAGTC 1 cut(s) 1163
Mox20I TGGCCA 1 cut(s) 1126
Mph1103I ATGCAT 1 cut(s) 1180
MroI TCCGGA 2 cut(s) 83, 104
MscI TGGCCA 1 cut(s) 1126
MseI TTAA 1 cut(s) 1413
MslI CAYNNNNRTG 1 cut(s) 1380
Msp20I TGGCCA 1 cut(s) 1126
MspA1I CMGCKG 3 cut(s) 291, 315, 1217
MspI CCGG 3 cut(s) 84, 105, 851
MspR9I CCNGG 2 cut(s) 357, 852
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 3 cut(s) 279, 291, 315
NciI CCSGG 1 cut(s) 852
NdeII GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
NlaIII CATG 5 cut(s) 13, 1182, 1241, 1385, 1479
NlaIV GGNNCC 6 cut(s) 37, 82, 103, 684, 954, 1287
NmeAIII GCCGAG 1 cut(s) 899
NmuCI GTSAC 3 cut(s) 17, 998, 1039
NsiI ATGCAT 1 cut(s) 1180
NspI RCATGY 2 cut(s) 13, 1182
PagI TCATGA 1 cut(s) 1237
PaqCI CACCTGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 1011, 1092
PflMI CCANNNNNTGG 3 cut(s) 362, 707, 815
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 1162
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 6 cut(s) 37, 82, 103, 684, 954, 1287
PspPI GGNCC 5 cut(s) 791, 821, 848, 952, 1364
PsrI GAACNNNNNNTAC 2 cut(s) 619, 651
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 3 cut(s) 53, 1195, 1408
PvuI CGATCG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 1217
RgaI GCGATCGC 1 cut(s) 277
RsaI GTAC 5 cut(s) 37, 409, 674, 737, 1112
RsaNI GTAC 5 cut(s) 36, 408, 673, 736, 1111
RseI CAYNNNNRTG 1 cut(s) 1380
SacII CCGCGG 2 cut(s) 292, 316
SaqAI TTAA 1 cut(s) 1413
Sau3AI GATC 6 cut(s) 53, 274, 1117, 1195, 1257, 1408
Sau96I GGNCC 5 cut(s) 791, 821, 848, 952, 1364
SchI GAGTC 1 cut(s) 1163
ScrFI CCNGG 2 cut(s) 357, 852
SduI GDGCHC 1 cut(s) 943
SfaAI GCGATCGC 1 cut(s) 277
SfaNI GCATC 4 cut(s) 748, 847, 1165, 1458
SfcI CTRYAG 3 cut(s) 687, 825, 945
SfiI GGCCNNNNNGGCC 1 cut(s) 879
Sfr303I CCGCGG 2 cut(s) 292, 316
SgfI GCGATCGC 1 cut(s) 277
SgrBI CCGCGG 2 cut(s) 292, 316
SinI GGWCC 3 cut(s) 821, 848, 1364
SmiMI CAYNNNNRTG 1 cut(s) 1380
Sse9I AATT 6 cut(s) 523, 571, 745, 1140, 1348, 1451
SspMI CTAG 3 cut(s) 57, 1008, 1290
StyD4I CCNGG 2 cut(s) 355, 850
StyI CCWWGG 2 cut(s) 652, 1289
TaaI ACNGT 7 cut(s) 77, 194, 449, 677, 986, 1045, 1235
TaiI ACGT 1 cut(s) 1108
TaqI TCGA 5 cut(s) 214, 253, 538, 922, 1047
TasI AATT 6 cut(s) 523, 571, 745, 1140, 1348, 1451
TfiI GAWTC 2 cut(s) 1011, 1092
Tru1I TTAA 1 cut(s) 1413
Tru9I TTAA 1 cut(s) 1413
TscAI CASTG 3 cut(s) 328, 1127, 1267
TseFI GTSAC 3 cut(s) 17, 998, 1039
TseI GCWGC 2 cut(s) 1205, 1460
Tsp45I GTSAC 3 cut(s) 17, 998, 1039
TspDTI ATGAA 4 cut(s) 567, 789, 1065, 1206
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 328, 1127, 1267
Van91I CCANNNNNTGG 3 cut(s) 362, 707, 815
VpaK11BI GGWCC 3 cut(s) 821, 848, 1364
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 1140
XceI RCATGY 2 cut(s) 13, 1182
XmaJI CCTAGG 1 cut(s) 1289
XspI CTAG 3 cut(s) 57, 1008, 1290
Zsp2I ATGCAT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.